CX291018

Overview
NameCX291018
Unique NameCX291018
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length433
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_STRPB (Elongation factor Tu OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=tuf PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.480e-15
Identity = 46/98 (46.94%), Postives = 61/98 (62.24%), Query Frame = 2
Query:   95 LDKLKAERER-GITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            +D    ERER GITI+ A  ++ET   +   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D
Sbjct:   53 IDAAPEERERAGITINTAHVEYETATRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKVD 143          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_STRAU (Elongation factor Tu OS=Streptomyces aureofaciens GN=tuf1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.480e-15
Identity = 42/97 (43.30%), Postives = 59/97 (60.82%), Query Frame = 2
Query:   95 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            +DK   ER+RGITI IA  +++T   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK D
Sbjct:   52 IDKAPEERQRGITISIAHVEYQTEARHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTKEHVLLARQVGVPYIVVALNKAD 141          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_SOLUE (Elongation factor Tu OS=Solibacter usitatus (strain Ellin6076) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.480e-15
Identity = 43/106 (40.57%), Postives = 62/106 (58.49%), Query Frame = 2
Query:   68 KRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            K  F+    +D    E+ RGITI +A  ++ET K +   +D PGH D+IKNMITG +Q D A++++ +T G          QTREH LLA  +GV  ++   NK+D
Sbjct:   42 KNKFRSFDSIDNAPEEKARGITIAVAHVEYETAKRHYAHVDCPGHADYIKNMITGAAQMDGAIVVVAATDGPMP-------QTREHILLARQVGVPYIVVAMNKVD 140          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_PELUB (Elongation factor Tu OS=Pelagibacter ubique GN=tuf PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.480e-15
Identity = 41/102 (40.20%), Postives = 60/102 (58.82%), Query Frame = 2
Query:   95 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK 400
            +DK   E+ERGITI  A  ++ET K +   +D PGH D++KNMITG +Q D A+L++++  G          QTREH LL   +G+  ++   NK+D    K
Sbjct:   50 IDKAPEEKERGITISTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVNAADGPMP-------QTREHILLGRQVGIPAIVVYLNKVDQVDDK 144          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_PELPD (Elongation factor Tu OS=Pelobacter propionicus (strain DSM 2379) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.480e-15
Identity = 46/113 (40.71%), Postives = 62/113 (54.87%), Query Frame = 2
Query:   47 KEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            K  A   +  FK    +D    ERERGITI  A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D
Sbjct:   34 KVLAGKGQAEFKAFDQIDNAPEERERGITIATAHVEYETDKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVYLNKAD 139          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_NEOSM (Elongation factor Tu OS=Neorickettsia sennetsu (strain Miyayama) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.480e-15
Identity = 45/120 (37.50%), Postives = 68/120 (56.67%), Query Frame = 2
Query:   32 IERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAT 391
            I +F  E     +  F+    +DK   ER+RGITI  A  +++T + +   +D PGH D+IKNMITG +Q D A+L++  T G  +       QT+EH LLA  +GV  ++   NK D++
Sbjct:   35 ITKFCSEEGGGYEADFRAYDNIDKAPEERQRGITISTAHVEYKTPERHYAHVDCPGHADYIKNMITGAAQMDGAILVVAGTDGAMQ-------QTKEHILLAKQVGVGSIVVYINKCDSS 147          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_MYCMS (Elongation factor Tu OS=Mycoplasma mycoides subsp. mycoides SC GN=tuf PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.480e-15
Identity = 44/113 (38.94%), Postives = 64/113 (56.64%), Query Frame = 2
Query:   47 KEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            K  +E     FK    +D    ERERGITI+ A  +++T   +   +D PGH D++KNMITG +Q D A+L++ +T G          QTREH LL+  +GV +++   NK D
Sbjct:   34 KVLSEQGNAEFKDYANIDNAPEERERGITINTAHVEYKTANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLSRQVGVPKIVVFLNKCD 139          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_MYCCT (Elongation factor Tu OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.480e-15
Identity = 44/113 (38.94%), Postives = 64/113 (56.64%), Query Frame = 2
Query:   47 KEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            K  +E     FK    +D    ERERGITI+ A  +++T   +   +D PGH D++KNMITG +Q D A+L++ +T G          QTREH LL+  +GV +++   NK D
Sbjct:   34 KVLSEQGNAEFKDYANIDNAPEERERGITINTAHVEYKTANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLSRQVGVPKIVVFLNKCD 139          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_LACJO (Elongation factor Tu OS=Lactobacillus johnsonii GN=tuf PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.480e-15
Identity = 43/97 (44.33%), Postives = 61/97 (62.89%), Query Frame = 2
Query:   95 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            +D    E+ERGITI+ A  ++ET   +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV+ ++   NK+D
Sbjct:   51 IDAAPEEKERGITINTAHVEYETKNRHYAHMDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVQYIVVFLNKVD 140          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_KOSOT (Elongation factor Tu OS=Kosmotoga olearia (strain TBF 19.5.1) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.480e-15
Identity = 43/97 (44.33%), Postives = 59/97 (60.82%), Query Frame = 2
Query:   95 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            +DK   E+ RGITI++   ++ET K +   ID PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  + V  M+   NK+D
Sbjct:   50 IDKAPEEKARGITINVTHVEYETEKRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAATDGVMP-------QTREHVLLARQVNVPAMVVFINKVD 139          
The following BLAST results are available for this feature:
BLAST of CX291018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_STRPB2.480e-1546.94Elongation factor Tu OS=Streptococcus pyogenes ser... [more]
EFTU_STRAU2.480e-1543.30Elongation factor Tu OS=Streptomyces aureofaciens ... [more]
EFTU_SOLUE2.480e-1540.57Elongation factor Tu OS=Solibacter usitatus (strai... [more]
EFTU_PELUB2.480e-1540.20Elongation factor Tu OS=Pelagibacter ubique GN=tuf... [more]
EFTU_PELPD2.480e-1540.71Elongation factor Tu OS=Pelobacter propionicus (st... [more]
EFTU_NEOSM2.480e-1537.50Elongation factor Tu OS=Neorickettsia sennetsu (st... [more]
EFTU_MYCMS2.480e-1538.94Elongation factor Tu OS=Mycoplasma mycoides subsp.... [more]
EFTU_MYCCT2.480e-1538.94Elongation factor Tu OS=Mycoplasma capricolum subs... [more]
EFTU_LACJO2.480e-1544.33Elongation factor Tu OS=Lactobacillus johnsonii GN... [more]
EFTU_KOSOT2.480e-1544.33Elongation factor Tu OS=Kosmotoga olearia (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC03003A04SK OF2 Citrus clementina cDNA clone C03003A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291018 ID=CX291018; Name=CX291018; organism=Citrus clementina; type=EST; length=433bp
CTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTTCGAGAAGG
AAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCCTGGGTGCTCGAC
AAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATATTGCCTTGTG
GAAGTTCGAGACCACCAAGTACTACTGCACCGTCATTGATGCTCCCGGAC
ATCGTGACTTTATCAAGAACATGATTACCGGTACCTCACAGGCTGACTGT
GCCGTCCTCATCATTGACTCCACCACCGGTGGTTTTGAAGCTGGTATCTC
CAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTGCTTTCACCCTTGGTG
TGAAGCAGATGATTTGCTGCTGTAACAAGATGGACGCCACCACCCCCAAG
TATTCAAAGGCTAGGTACGATGAAATTGTGAAG
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