CX291018

Overview
NameCX291018
Unique NameCX291018
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length433
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_GEOUR (Elongation factor Tu OS=Geobacter uraniireducens (strain Rf4) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.480e-15
Identity = 46/113 (40.71%), Postives = 62/113 (54.87%), Query Frame = 2
Query:   47 KEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            K  A   +  FK    +D    ERERGITI  A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D
Sbjct:   34 KVLAGKGQAEFKAFDQIDNAPEERERGITIATAHVEYETDKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKAD 139          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_GEOSL (Elongation factor Tu OS=Geobacter sulfurreducens GN=tuf1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.480e-15
Identity = 45/113 (39.82%), Postives = 63/113 (55.75%), Query Frame = 2
Query:   47 KEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            K  AE  +  F+    +D    ERERGITI  +  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D
Sbjct:   34 KVLAERGQAEFRGFDQIDNAPEERERGITIATSHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKAD 139          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_DESDG (Elongation factor Tu OS=Desulfovibrio desulfuricans (strain G20) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.480e-15
Identity = 43/97 (44.33%), Postives = 59/97 (60.82%), Query Frame = 2
Query:   95 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            +DK   E+ERGITI  A  ++ETT  +   +D PGH D+IKNMITG +Q D A++++ +T G          QTREH LLA  +GV  ++   NK D
Sbjct:   50 IDKAPEEKERGITIATAHVEYETTLRHYAHVDCPGHADYIKNMITGAAQMDGAIIVVAATDGPMP-------QTREHILLARQVGVPSIVVFLNKCD 139          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_BIFLO (Elongation factor Tu OS=Bifidobacterium longum GN=tuf PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.480e-15
Identity = 42/97 (43.30%), Postives = 59/97 (60.82%), Query Frame = 2
Query:   95 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            +D    E  RGITI+IA  +++T K +   +D PGH DF+KNMITG +Q D A+L++ +T G          QTREH LLA  +GV +++   NK D
Sbjct:   52 IDSAPEEAARGITINIAHIEYQTEKRHYAHVDCPGHADFVKNMITGAAQMDGAILVVAATDGPM-------AQTREHVLLARQVGVPKILVALNKCD 141          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_BIFLI (Elongation factor Tu OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.480e-15
Identity = 42/97 (43.30%), Postives = 59/97 (60.82%), Query Frame = 2
Query:   95 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            +D    E  RGITI+IA  +++T K +   +D PGH DF+KNMITG +Q D A+L++ +T G          QTREH LLA  +GV +++   NK D
Sbjct:   52 IDSAPEEAARGITINIAHIEYQTEKRHYAHVDCPGHADFVKNMITGAAQMDGAILVVAATDGPM-------AQTREHVLLARQVGVPKILVALNKCD 141          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_BIFLD (Elongation factor Tu OS=Bifidobacterium longum (strain DJO10A) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.480e-15
Identity = 42/97 (43.30%), Postives = 59/97 (60.82%), Query Frame = 2
Query:   95 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            +D    E  RGITI+IA  +++T K +   +D PGH DF+KNMITG +Q D A+L++ +T G          QTREH LLA  +GV +++   NK D
Sbjct:   52 IDSAPEEAARGITINIAHIEYQTEKRHYAHVDCPGHADFVKNMITGAAQMDGAILVVAATDGPM-------AQTREHVLLARQVGVPKILVALNKCD 141          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_BIFAA (Elongation factor Tu OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.480e-15
Identity = 42/97 (43.30%), Postives = 59/97 (60.82%), Query Frame = 2
Query:   95 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            +D    E  RGITI+IA  +++T K +   +D PGH DF+KNMITG +Q D A+L++ +T G          QTREH LLA  +GV +++   NK D
Sbjct:   52 IDSAPEEAARGITINIAHIEYQTEKRHYAHVDCPGHADFVKNMITGAAQMDGAILVVAATDGPM-------AQTREHVLLARQVGVPKILVALNKCD 141          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_ACIC1 (Elongation factor Tu OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.480e-15
Identity = 42/97 (43.30%), Postives = 58/97 (59.79%), Query Frame = 2
Query:   95 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            +DK   ER RGITI IA  +++T K +   +D PGH D+IKNMITG +Q D A+L++ +  G          QT+EH LLA  +GV  ++   NK D
Sbjct:   52 IDKAPEERARGITISIAHVEYQTEKRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-------QTKEHVLLARQVGVPYIVVALNKAD 141          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU2_STRRA (Elongation factor Tu-2 OS=Streptomyces ramocissimus GN=tuf2 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.480e-15
Identity = 42/97 (43.30%), Postives = 59/97 (60.82%), Query Frame = 2
Query:   95 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            +DK   ER+RGITI IA  +++T   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK D
Sbjct:   52 IDKAPEERQRGITISIAHVEYQTEARHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTKEHVLLARQVGVPYIVVALNKTD 141          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU1_STRRA (Elongation factor Tu-1 OS=Streptomyces ramocissimus GN=tuf1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.480e-15
Identity = 42/97 (43.30%), Postives = 59/97 (60.82%), Query Frame = 2
Query:   95 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            +DK   ER+RGITI IA  +++T   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK D
Sbjct:   52 IDKAPEERQRGITISIAHVEYQTEARHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTKEHVLLARQVGVPYIVVALNKAD 141          
The following BLAST results are available for this feature:
BLAST of CX291018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_GEOUR2.480e-1540.71Elongation factor Tu OS=Geobacter uraniireducens (... [more]
EFTU_GEOSL2.480e-1539.82Elongation factor Tu OS=Geobacter sulfurreducens G... [more]
EFTU_DESDG2.480e-1544.33Elongation factor Tu OS=Desulfovibrio desulfurican... [more]
EFTU_BIFLO2.480e-1543.30Elongation factor Tu OS=Bifidobacterium longum GN=... [more]
EFTU_BIFLI2.480e-1543.30Elongation factor Tu OS=Bifidobacterium longum sub... [more]
EFTU_BIFLD2.480e-1543.30Elongation factor Tu OS=Bifidobacterium longum (st... [more]
EFTU_BIFAA2.480e-1543.30Elongation factor Tu OS=Bifidobacterium adolescent... [more]
EFTU_ACIC12.480e-1543.30Elongation factor Tu OS=Acidothermus cellulolyticu... [more]
EFTU2_STRRA2.480e-1543.30Elongation factor Tu-2 OS=Streptomyces ramocissimu... [more]
EFTU1_STRRA2.480e-1543.30Elongation factor Tu-1 OS=Streptomyces ramocissimu... [more]

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Properties
Property NameValue
Genbank descriptionC03003A04SK OF2 Citrus clementina cDNA clone C03003A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291018 ID=CX291018; Name=CX291018; organism=Citrus clementina; type=EST; length=433bp
CTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTTCGAGAAGG
AAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCCTGGGTGCTCGAC
AAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATATTGCCTTGTG
GAAGTTCGAGACCACCAAGTACTACTGCACCGTCATTGATGCTCCCGGAC
ATCGTGACTTTATCAAGAACATGATTACCGGTACCTCACAGGCTGACTGT
GCCGTCCTCATCATTGACTCCACCACCGGTGGTTTTGAAGCTGGTATCTC
CAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTGCTTTCACCCTTGGTG
TGAAGCAGATGATTTGCTGCTGTAACAAGATGGACGCCACCACCCCCAAG
TATTCAAAGGCTAGGTACGATGAAATTGTGAAG
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