CX291018

Overview
NameCX291018
Unique NameCX291018
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length433
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU1_STRCU (Elongation factor Tu-1 OS=Streptomyces collinus GN=tuf1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.480e-15
Identity = 42/97 (43.30%), Postives = 59/97 (60.82%), Query Frame = 2
Query:   95 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            +DK   ER+RGITI IA  +++T   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK D
Sbjct:   52 IDKAPEERQRGITISIAHVEYQTETRHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTKEHVLLARQVGVPYIVVALNKAD 141          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU1_STRCO (Elongation factor Tu-1 OS=Streptomyces coelicolor GN=tuf1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.480e-15
Identity = 42/97 (43.30%), Postives = 59/97 (60.82%), Query Frame = 2
Query:   95 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            +DK   ER+RGITI IA  +++T   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK D
Sbjct:   52 IDKAPEERQRGITISIAHVEYQTEARHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTKEHVLLARQVGVPYIVVALNKAD 141          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU1_STRAW (Elongation factor Tu 1 OS=Streptomyces avermitilis GN=tuf1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.480e-15
Identity = 42/97 (43.30%), Postives = 59/97 (60.82%), Query Frame = 2
Query:   95 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            +DK   ER+RGITI IA  +++T   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK D
Sbjct:   52 IDKAPEERQRGITISIAHVEYQTETRHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTKEHVLLARQVGVPYIVVALNKAD 141          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTM_ARATH (Elongation factor Tu, mitochondrial OS=Arabidopsis thaliana GN=TUFA PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.480e-15
Identity = 40/97 (41.24%), Postives = 58/97 (59.79%), Query Frame = 2
Query:   95 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            +DK   E++RGITI  A  ++ET K +   +D PGH D++KNMITG +Q D  +L++    G          QT+EH LLA  +GV  ++C  NK+D
Sbjct:  105 IDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSGPDGPMP-------QTKEHILLARQVGVPSLVCFLNKVD 194          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_THENN (Elongation factor Tu OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.238e-15
Identity = 45/97 (46.39%), Postives = 58/97 (59.79%), Query Frame = 2
Query:   95 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            +DK   E+ RGITI+I   ++ET K +   ID PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  + V  MI   NK D
Sbjct:   50 IDKAPEEKARGITINITHVEYETEKRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVEVPYMIVFINKTD 139          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_THEMA (Elongation factor Tu OS=Thermotoga maritima GN=tuf PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 3.238e-15
Identity = 45/97 (46.39%), Postives = 58/97 (59.79%), Query Frame = 2
Query:   95 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            +DK   E+ RGITI+I   ++ET K +   ID PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  + V  MI   NK D
Sbjct:   50 IDKAPEEKARGITINITHVEYETEKRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVEVPYMIVFINKTD 139          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_THELT (Elongation factor Tu OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.238e-15
Identity = 43/98 (43.88%), Postives = 60/98 (61.22%), Query Frame = 2
Query:   95 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA 388
            +DK   E+ RGITI+I   ++++ K +   ID PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  + V  M+   NK+DA
Sbjct:   50 IDKAPEEKARGITINITHVEYQSEKRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVNVPAMVVFLNKVDA 140          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_PLARO (Elongation factor Tu OS=Planobispora rosea GN=tuf PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 3.238e-15
Identity = 41/97 (42.27%), Postives = 59/97 (60.82%), Query Frame = 2
Query:   95 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            +DK   E+ RGITI IA  +++T K +   +D PGH D++KNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK D
Sbjct:   52 IDKAPEEKARGITISIAHVEYQTEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTKEHVLLARQVGVPYIVVALNKAD 141          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_PICGU (Elongation factor Tu, mitochondrial OS=Pichia guilliermondii GN=TUF1 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.238e-15
Identity = 41/97 (42.27%), Postives = 60/97 (61.86%), Query Frame = 2
Query:   95 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            +D+   ER RGITI  A  +++T K +   +D PGH D+IKNMITG +Q D A++++ +T G          QTREH LLA  +GV+ ++   NK+D
Sbjct:   74 IDRAPEERARGITISTAHVEYQTDKRHYAHVDCPGHADYIKNMITGAAQMDGAIIVVAATDGQMP-------QTREHLLLARQVGVQHLVVFVNKVD 163          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_MYCMO (Elongation factor Tu OS=Mycoplasma mobile GN=tuf PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.238e-15
Identity = 41/97 (42.27%), Postives = 60/97 (61.86%), Query Frame = 2
Query:   95 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            +D    ERERGITI+ +  ++ T K +   +D PGH D++KNMITG +Q D A+L++ +T G          QTREH LL+  +GV +M+   NK+D
Sbjct:   51 IDNAPEERERGITINTSHIEYNTEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLSKQVGVPKMVVFLNKVD 140          
The following BLAST results are available for this feature:
BLAST of CX291018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU1_STRCU2.480e-1543.30Elongation factor Tu-1 OS=Streptomyces collinus GN... [more]
EFTU1_STRCO2.480e-1543.30Elongation factor Tu-1 OS=Streptomyces coelicolor ... [more]
EFTU1_STRAW2.480e-1543.30Elongation factor Tu 1 OS=Streptomyces avermitilis... [more]
EFTM_ARATH2.480e-1541.24Elongation factor Tu, mitochondrial OS=Arabidopsis... [more]
EFTU_THENN3.238e-1546.39Elongation factor Tu OS=Thermotoga neapolitana (st... [more]
EFTU_THEMA3.238e-1546.39Elongation factor Tu OS=Thermotoga maritima GN=tuf... [more]
EFTU_THELT3.238e-1543.88Elongation factor Tu OS=Thermotoga lettingae (stra... [more]
EFTU_PLARO3.238e-1542.27Elongation factor Tu OS=Planobispora rosea GN=tuf ... [more]
EFTU_PICGU3.238e-1542.27Elongation factor Tu, mitochondrial OS=Pichia guil... [more]
EFTU_MYCMO3.238e-1542.27Elongation factor Tu OS=Mycoplasma mobile GN=tuf P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC03003A04SK OF2 Citrus clementina cDNA clone C03003A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291018 ID=CX291018; Name=CX291018; organism=Citrus clementina; type=EST; length=433bp
CTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTTCGAGAAGG
AAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCCTGGGTGCTCGAC
AAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATATTGCCTTGTG
GAAGTTCGAGACCACCAAGTACTACTGCACCGTCATTGATGCTCCCGGAC
ATCGTGACTTTATCAAGAACATGATTACCGGTACCTCACAGGCTGACTGT
GCCGTCCTCATCATTGACTCCACCACCGGTGGTTTTGAAGCTGGTATCTC
CAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTGCTTTCACCCTTGGTG
TGAAGCAGATGATTTGCTGCTGTAACAAGATGGACGCCACCACCCCCAAG
TATTCAAAGGCTAGGTACGATGAAATTGTGAAG
back to top