CX291018

Overview
NameCX291018
Unique NameCX291018
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length433
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_MYCA9 (Elongation factor Tu OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.238e-15
Identity = 42/97 (43.30%), Postives = 60/97 (61.86%), Query Frame = 2
Query:   95 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            +D    E+ RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D
Sbjct:   52 IDNAPEEKARGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKSD 141          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_GUITH (Elongation factor Tu, chloroplastic OS=Guillardia theta GN=tufA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.238e-15
Identity = 42/97 (43.30%), Postives = 57/97 (58.76%), Query Frame = 2
Query:   95 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            +D    ER RGITI+ A  ++ET K+Y   +D PGH D++KNMITG +Q D A+L+  +  G          QTREH LLA  +GV  ++   NK D
Sbjct:   49 IDSAPEERARGITINTAHVEYETDKWYYAHVDCPGHADYVKNMITGAAQMDGAILVCSAANGPMP-------QTREHILLAKQVGVPYIVVFLNKAD 138          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_EXISA (Elongation factor Tu OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.238e-15
Identity = 46/114 (40.35%), Postives = 67/114 (58.77%), Query Frame = 2
Query:   53 AAEMNKRSFKYAWVLDKLKA---ERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            +A ++K   K A   D++     ERERGITI  A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +T G          QTREH LL+  +GV  ++   NK+D
Sbjct:   33 SAVLSKAQGKAATKFDQIDGAPEERERGITIATAHIEYETDKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMP-------QTREHILLSRQVGVPYIVVFMNKVD 139          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_CHLT3 (Elongation factor Tu OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.238e-15
Identity = 42/102 (41.18%), Postives = 60/102 (58.82%), Query Frame = 2
Query:   95 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK 400
            +DK   E+ERGITI  +  ++ET   +   ID PGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  + V  ++   NK+D   P+
Sbjct:   50 IDKAPEEKERGITISTSHVEYETPSRHYAHIDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLAKQVNVPSIVVFMNKVDIADPE 144          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_BORHD (Elongation factor Tu OS=Borrelia hermsii (strain DAH) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.238e-15
Identity = 40/102 (39.22%), Postives = 62/102 (60.78%), Query Frame = 2
Query:   95 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK 400
            +D    E+ RGITI+    ++ET   +   +D PGH D+IKNMITG +Q D A+L++ + +G        + QT+EH LLA  +G+K++I   NK+D   P+
Sbjct:   51 IDNAPEEKARGITINARHIEYETAGRHYAHVDCPGHADYIKNMITGAAQMDAAILLVAADSGA-------EPQTKEHLLLAQRMGIKKIIVFLNKLDLADPE 145          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_ACIBL (Elongation factor Tu OS=Acidobacteria bacterium (strain Ellin345) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.238e-15
Identity = 45/107 (42.06%), Postives = 62/107 (57.94%), Query Frame = 2
Query:   68 KRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA 388
            K +F+    +D    ERERGITI  A  ++ET   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK DA
Sbjct:   42 KIAFRSFDSIDNAPEERERGITIATAHVEYETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTKEHVLLARQVGVPYVVVFLNKCDA 141          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU2_CARHZ (Elongation factor Tu 2 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.238e-15
Identity = 42/97 (43.30%), Postives = 58/97 (59.79%), Query Frame = 2
Query:   95 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            +D    ERERGITI+ A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D
Sbjct:   50 IDNAPEERERGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKAD 139          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU1_RHOPS (Elongation factor Tu 1 OS=Rhodopseudomonas palustris (strain BisB5) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.238e-15
Identity = 45/113 (39.82%), Postives = 62/113 (54.87%), Query Frame = 2
Query:   47 KEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            K  AE    +F     +DK   E+ RGITI  A  ++ETT  +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D
Sbjct:   34 KVLAETGGATFTAYDQIDKAPEEKARGITISTAHVEYETTNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPALVVFLNKCD 139          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU1_CARHZ (Elongation factor Tu 1 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.238e-15
Identity = 42/97 (43.30%), Postives = 58/97 (59.79%), Query Frame = 2
Query:   95 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            +D    ERERGITI+ A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D
Sbjct:   50 IDNAPEERERGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKAD 139          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: CYSN_PHOLL (Sulfate adenylyltransferase subunit 1 OS=Photorhabdus luminescens subsp. laumondii GN=cysN PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.238e-15
Identity = 41/100 (41.00%), Postives = 59/100 (59.00%), Query Frame = 2
Query:   86 AWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            A ++D L AERE+GITID+A   F T K    + D PGH  + +NM TG S  D ++L+ID+  G  E       QTR H+ ++  LG++ ++   NKMD
Sbjct:   84 ALLVDGLAAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLSILLIDARKGVQE-------QTRRHSFISTLLGIRHLVVAVNKMD 176          
The following BLAST results are available for this feature:
BLAST of CX291018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_MYCA93.238e-1543.30Elongation factor Tu OS=Mycobacterium abscessus (s... [more]
EFTU_GUITH3.238e-1543.30Elongation factor Tu, chloroplastic OS=Guillardia ... [more]
EFTU_EXISA3.238e-1540.35Elongation factor Tu OS=Exiguobacterium sp. (strai... [more]
EFTU_CHLT33.238e-1541.18Elongation factor Tu OS=Chloroherpeton thalassium ... [more]
EFTU_BORHD3.238e-1539.22Elongation factor Tu OS=Borrelia hermsii (strain D... [more]
EFTU_ACIBL3.238e-1542.06Elongation factor Tu OS=Acidobacteria bacterium (s... [more]
EFTU2_CARHZ3.238e-1543.30Elongation factor Tu 2 OS=Carboxydothermus hydroge... [more]
EFTU1_RHOPS3.238e-1539.82Elongation factor Tu 1 OS=Rhodopseudomonas palustr... [more]
EFTU1_CARHZ3.238e-1543.30Elongation factor Tu 1 OS=Carboxydothermus hydroge... [more]
CYSN_PHOLL3.238e-1541.00Sulfate adenylyltransferase subunit 1 OS=Photorhab... [more]

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Properties
Property NameValue
Genbank descriptionC03003A04SK OF2 Citrus clementina cDNA clone C03003A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291018 ID=CX291018; Name=CX291018; organism=Citrus clementina; type=EST; length=433bp
CTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTTCGAGAAGG
AAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCCTGGGTGCTCGAC
AAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATATTGCCTTGTG
GAAGTTCGAGACCACCAAGTACTACTGCACCGTCATTGATGCTCCCGGAC
ATCGTGACTTTATCAAGAACATGATTACCGGTACCTCACAGGCTGACTGT
GCCGTCCTCATCATTGACTCCACCACCGGTGGTTTTGAAGCTGGTATCTC
CAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTGCTTTCACCCTTGGTG
TGAAGCAGATGATTTGCTGCTGTAACAAGATGGACGCCACCACCCCCAAG
TATTCAAAGGCTAGGTACGATGAAATTGTGAAG
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