CX291018

Overview
NameCX291018
Unique NameCX291018
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length433
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig789 contig Ccv1_Contig789:296..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: CYSN_BUCAT (Sulfate adenylyltransferase subunit 1 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=cysN PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.238e-15
Identity = 44/116 (37.93%), Postives = 65/116 (56.03%), Query Frame = 2
Query:   86 AWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK 433
            A V+D L++ERE+GITID+A   F T K    + D PGH  + +NM TG S  D ++L++D+  G  E       QT  H+ ++  LG+K +I   NKMD     Y +  ++ I K
Sbjct:   73 ALVVDGLQSEREQGITIDVAYRYFSTNKRKFIIADTPGHEQYTRNMATGASTCDLSILLVDARKGLSE-------QTYRHSFISTLLGIKYLIVAINKMDLV--NYKQEIFENIKK 179          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: CYSN_BUCAI (Sulfate adenylyltransferase subunit 1 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=cysN PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.238e-15
Identity = 44/116 (37.93%), Postives = 65/116 (56.03%), Query Frame = 2
Query:   86 AWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK 433
            A V+D L++ERE+GITID+A   F T K    + D PGH  + +NM TG S  D ++L++D+  G  E       QT  H+ ++  LG+K +I   NKMD     Y +  ++ I K
Sbjct:   73 ALVVDGLQSEREQGITIDVAYRYFSTNKRKFIIADTPGHEQYTRNMATGASTCDLSILLVDARKGLSE-------QTYRHSFISTLLGIKYLIVAINKMDLV--NYKQEIFENIKK 179          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: CYSN_BUCA5 (Sulfate adenylyltransferase subunit 1 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=cysN PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.238e-15
Identity = 44/116 (37.93%), Postives = 65/116 (56.03%), Query Frame = 2
Query:   86 AWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK 433
            A V+D L++ERE+GITID+A   F T K    + D PGH  + +NM TG S  D ++L++D+  G  E       QT  H+ ++  LG+K +I   NKMD     Y +  ++ I K
Sbjct:   73 ALVVDGLQSEREQGITIDVAYRYFSTNKRKFIIADTPGHEQYTRNMATGASTCDLSILLVDARKGLSE-------QTYRHSFISTLLGIKYLIVAINKMDLV--NYKQEIFENIKK 179          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_TAXOC (Elongation factor Tu OS=Taxeobacter ocellatus GN=tuf PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.230e-15
Identity = 40/97 (41.24%), Postives = 59/97 (60.82%), Query Frame = 2
Query:   95 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            +D    E+ERGITI+ A  ++ T   +   +D PGH D++KNM+TG +Q D A+L++ +T G          QTREH LLA  +GV Q++   NK+D
Sbjct:   50 IDNAPEEKERGITINTAHVEYSTANRHYAHVDCPGHADYVKNMVTGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVPQLVVFMNKVD 139          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_STRCJ (Elongation factor Tu OS=Streptomyces cinnamoneus GN=tuf PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 4.230e-15
Identity = 42/97 (43.30%), Postives = 58/97 (59.79%), Query Frame = 2
Query:   95 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            +DK   ER+RGITI IA  +++T   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QT+EH LLA   GV  ++   NK D
Sbjct:   52 IDKAPEERQRGITISIAHVEYQTESRHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTKEHVLLARQSGVPYIVVALNKAD 141          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_LEUCK (Elongation factor Tu OS=Leuconostoc citreum (strain KM20) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.230e-15
Identity = 42/97 (43.30%), Postives = 60/97 (61.86%), Query Frame = 2
Query:   95 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            +D    E+ERGITI+ +  ++ET   +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV+ ++   NK D
Sbjct:   50 IDNAPEEKERGITINTSHIEYETETRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVEYLVVFLNKTD 139          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_KINRD (Elongation factor Tu OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.230e-15
Identity = 41/97 (42.27%), Postives = 59/97 (60.82%), Query Frame = 2
Query:   95 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            +DK   ER+RGITI IA  +++T   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QT+EH +LA  +GV  ++   NK D
Sbjct:   52 IDKAPEERQRGITISIAHVEYQTEARHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTKEHVILARQVGVPYIVVALNKAD 141          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_ERYLH (Elongation factor Tu OS=Erythrobacter litoralis (strain HTCC2594) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.230e-15
Identity = 41/97 (42.27%), Postives = 59/97 (60.82%), Query Frame = 2
Query:   95 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            +DK   ERERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++++  G          QTREH LL+  +GV  ++   NK+D
Sbjct:   50 IDKAPEERERGITISTAHVEYETDARHYAHVDCPGHADYVKNMITGAAQMDGAILVVNAADGPMP-------QTREHILLSRQVGVPALVVYLNKVD 139          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: EFTU_CAMHC (Elongation factor Tu OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.230e-15
Identity = 43/97 (44.33%), Postives = 58/97 (59.79%), Query Frame = 2
Query:   95 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            +D    E+ERGITI  +  ++ET K +   +D PGH D++KNMITG +Q D A+L+I ST G          QTREH LLA  +GV  ++   NK D
Sbjct:   50 IDNAPEEKERGITIATSHIEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVIASTDGPM-------AQTREHILLARQVGVPYIVVFLNKTD 139          
BLAST of CX291018 vs. ExPASy Swiss-Prot
Match: CYSN_SODGM (Sulfate adenylyltransferase subunit 1 OS=Sodalis glossinidius (strain morsitans) GN=cysN PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.230e-15
Identity = 41/100 (41.00%), Postives = 59/100 (59.00%), Query Frame = 2
Query:   86 AWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 385
            A ++D L+AERE+GITID+A   F T K    + D PGH  + +NM TG S  D A+L+ID   G  +       QTR H+ ++  LG++ ++   NKMD
Sbjct:   79 ALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDVAILLIDVRKGVLD-------QTRLHSFISTLLGIRHLVVAVNKMD 171          
The following BLAST results are available for this feature:
BLAST of CX291018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CYSN_BUCAT3.238e-1537.93Sulfate adenylyltransferase subunit 1 OS=Buchnera ... [more]
CYSN_BUCAI3.238e-1537.93Sulfate adenylyltransferase subunit 1 OS=Buchnera ... [more]
CYSN_BUCA53.238e-1537.93Sulfate adenylyltransferase subunit 1 OS=Buchnera ... [more]
EFTU_TAXOC4.230e-1541.24Elongation factor Tu OS=Taxeobacter ocellatus GN=t... [more]
EFTU_STRCJ4.230e-1543.30Elongation factor Tu OS=Streptomyces cinnamoneus G... [more]
EFTU_LEUCK4.230e-1543.30Elongation factor Tu OS=Leuconostoc citreum (strai... [more]
EFTU_KINRD4.230e-1542.27Elongation factor Tu OS=Kineococcus radiotolerans ... [more]
EFTU_ERYLH4.230e-1542.27Elongation factor Tu OS=Erythrobacter litoralis (s... [more]
EFTU_CAMHC4.230e-1544.33Elongation factor Tu OS=Campylobacter hominis (str... [more]
CYSN_SODGM4.230e-1541.00Sulfate adenylyltransferase subunit 1 OS=Sodalis g... [more]

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Properties
Property NameValue
Genbank descriptionC03003A04SK OF2 Citrus clementina cDNA clone C03003A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291018 ID=CX291018; Name=CX291018; organism=Citrus clementina; type=EST; length=433bp
CTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTTCGAGAAGG
AAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCCTGGGTGCTCGAC
AAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATATTGCCTTGTG
GAAGTTCGAGACCACCAAGTACTACTGCACCGTCATTGATGCTCCCGGAC
ATCGTGACTTTATCAAGAACATGATTACCGGTACCTCACAGGCTGACTGT
GCCGTCCTCATCATTGACTCCACCACCGGTGGTTTTGAAGCTGGTATCTC
CAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTGCTTTCACCCTTGGTG
TGAAGCAGATGATTTGCTGCTGTAACAAGATGGACGCCACCACCCCCAAG
TATTCAAAGGCTAGGTACGATGAAATTGTGAAG
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