CX291022

Overview
NameCX291022
Unique NameCX291022
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length389
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_YERPA (Glycine cleavage system H protein OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.005e-31
Identity = 64/122 (52.46%), Postives = 86/122 (70.49%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSA-TIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEE 371
            +LKYA SHEWV+ DG+   ++GIT+HAQ+ LGD+V+V+LPEVG  V  G+     ESVKA SD+ +P+SG++V VN EL +SP LVNS+PY DGW+  ++     EL  L+DAD Y    EE
Sbjct:    7 ELKYALSHEWVRADGDGVYSVGITEHAQELLGDMVFVDLPEVGSDVSAGSDCAVAESVKAASDIYAPISGEIVAVNTELENSPELVNSAPYTDGWLFSIKAADESELDNLLDADAYLAAIEE 128          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_YERP3 (Glycine cleavage system H protein OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.005e-31
Identity = 64/122 (52.46%), Postives = 86/122 (70.49%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSA-TIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEE 371
            +LKYA SHEWV+ DG+   ++GIT+HAQ+ LGD+V+V+LPEVG  V  G+     ESVKA SD+ +P+SG++V VN EL +SP LVNS+PY DGW+  ++     EL  L+DAD Y    EE
Sbjct:    7 ELKYALSHEWVRADGDGVYSVGITEHAQELLGDMVFVDLPEVGSDVSAGSDCAVAESVKAASDIYAPISGEIVAVNTELENSPELVNSAPYTDGWLFSIKAADESELDNLLDADAYLAAIEE 128          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_SERP5 (Glycine cleavage system H protein OS=Serratia proteamaculans (strain 568) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.005e-31
Identity = 65/122 (53.28%), Postives = 87/122 (71.31%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSA-TIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEE 371
            +LKYA SHEWV+ +GN   T+GIT+HAQ+ LGD+V+V+LPEVG TV  G      ESVKA SD+ +P+SG++V VN EL SSP LVNS PY +G++ +++    GEL KL+DA  Y    +E
Sbjct:    7 ELKYASSHEWVRSEGNGVYTVGITEHAQELLGDMVFVDLPEVGRTVAAGEDCAVAESVKAASDIYAPISGEIVAVNGELESSPELVNSGPYAEGFLFQIKASDEGELAKLLDATAYQASIDE 128          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_ANOFW (Glycine cleavage system H protein OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.005e-31
Identity = 61/123 (49.59%), Postives = 85/123 (69.11%), Query Frame = 3
Query:    6 KDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            K+L+Y+  HEWV+V+GN+  IGITD AQ  LGD+V+VELPEVG  +     FG+VESVK  S++ +P+SGKVV VNEEL+ +P  VN SPY   W+I +E     E+  L+ A+QY +   ++
Sbjct:    5 KELRYSQEHEWVRVEGNTVRIGITDFAQSELGDIVFVELPEVGAQLTANEPFGSVESVKTVSELYAPISGKVVAVNEELNDNPEYVNESPYDKAWMIVIEPSDLSEVDNLLTAEQYEQMINQD 127          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_SALAR (Glycine cleavage system H protein OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=gcvH PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.313e-31
Identity = 63/123 (51.22%), Postives = 86/123 (69.92%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSA-TIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            +LKY+  HEW++ + +   T+GIT+HAQ+ LGD+V+V+LPEVG TV  G      ESVKA SD+ +PVSG++V VN+ LS SP LVNS PY DGWI K++  +  EL+ L+DA  Y    E+E
Sbjct:    7 ELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYADGWIFKIKASNESELESLLDATAYEALLEDE 129          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_METI4 (Glycine cleavage system H protein OS=Methylacidiphilum infernorum (isolate V4) GN=gcvH PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.313e-31
Identity = 61/123 (49.59%), Postives = 87/123 (70.73%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEED 377
            D  Y D+HEWV V G+ AT+GIT+HAQ  L D+VY+ELP+VG    Q A  G VESVKA SD+ +PVSG+++ VN +L   P+L+NS+PY +GWI K++M +  EL  L DA+ Y +  ++++
Sbjct:    6 DRLYTDTHEWVNVSGDVATVGITEHAQRELSDIVYIELPKVGERFNQKAVVGVVESVKAASDLYAPVSGEILAVNTQLVEQPSLINSNPYGEGWIFKMKMTNPDELSSLKDAEAYQELLQDKE 128          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_LISIN (Glycine cleavage system H protein OS=Listeria innocua GN=gcvH PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.313e-31
Identity = 64/118 (54.24%), Postives = 81/118 (68.64%), Query Frame = 3
Query:    6 KDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTK 359
            KDL Y + HEWVK +  S  IGITD AQD LGD+V+VELPEVG TV +G S G++ESVK  SD  +PV+GKVV VNE L   P L+NS+PY  GWI+K+      ++  L+ +D Y K
Sbjct:    5 KDLLYTEEHEWVKAEDGSYIIGITDFAQDQLGDIVFVELPEVGDTVTKGDSIGSIESVKTVSDFYAPVTGKVVAVNETLEDEPELINSNPYDTGWILKLTEVEEADVTALLSSDDYEK 122          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_KLEP7 (Glycine cleavage system H protein OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=gcvH PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.313e-31
Identity = 62/123 (50.41%), Postives = 86/123 (69.92%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSA-TIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            +LKY+  HEW++ +     T+GIT+HAQ+ LGD+V+V+LPEVG TV+ GA     ESVKA SD+ +P+SG++V VNEEL+ SP LVNS PY DGWI K++     ++  L+DA  Y    E+E
Sbjct:    7 ELKYSKEHEWLRKEAEGTYTVGITEHAQELLGDMVFVDLPEVGATVEAGADCAVAESVKAASDIYAPISGEIVAVNEELNDSPELVNSDPYTDGWIFKIKASDEAQVAALLDAAAYEALLEDE 129          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_XYLFT (Glycine cleavage system H protein OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=gcvH PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.714e-31
Identity = 61/124 (49.19%), Postives = 86/124 (69.35%), Query Frame = 3
Query:    9 DLKYADSHEWVKV-DGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEED 377
            DLK+  SHEWV++ D N A +G++DHAQ+ LGD+VYVELP +G  +  GA+   +ESVKA SD+ SPV+GKV+EVN  LS  P  +N  PY +GWI+ +EM +  E+  L+  D YT+  E ++
Sbjct:    7 DLKFLKSHEWVRIEDNNRAIVGVSDHAQNLLGDLVYVELPNIGDHLDAGATAAVIESVKAASDIYSPVTGKVIEVNTTLSDKPETINEDPYGEGWIMVIEMQAPEEISNLLSPDDYTEVLESDE 130          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_XYLFM (Glycine cleavage system H protein OS=Xylella fastidiosa (strain M12) GN=gcvH PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.714e-31
Identity = 62/124 (50.00%), Postives = 86/124 (69.35%), Query Frame = 3
Query:    9 DLKYADSHEWVKV-DGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEED 377
            DLK+  SHEWV++ D N A +GI+DHAQ+ LGD+VYVELP +G  +  GA+   +ESVKA SD+ SPV+GKV+EVN  LS  P  +N  PY +GWI+ +EM +  E+  L+  D YT+  E ++
Sbjct:    7 DLKFLKSHEWVRIEDNNRAIVGISDHAQNLLGDLVYVELPNIGDHLDAGATAAVIESVKAASDIYSPVTGKVIEVNTTLSDKPETINEDPYGEGWIMVIEMQAPEEISDLLSPDDYTEVLESDE 130          
The following BLAST results are available for this feature:
BLAST of CX291022 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 462
Match NameE-valueIdentityDescription
GCSH_YERPA1.005e-3152.46Glycine cleavage system H protein OS=Yersinia pest... [more]
GCSH_YERP31.005e-3152.46Glycine cleavage system H protein OS=Yersinia pseu... [more]
GCSH_SERP51.005e-3153.28Glycine cleavage system H protein OS=Serratia prot... [more]
GCSH_ANOFW1.005e-3149.59Glycine cleavage system H protein OS=Anoxybacillus... [more]
GCSH_SALAR1.313e-3151.22Glycine cleavage system H protein OS=Salmonella ar... [more]
GCSH_METI41.313e-3149.59Glycine cleavage system H protein OS=Methylacidiph... [more]
GCSH_LISIN1.313e-3154.24Glycine cleavage system H protein OS=Listeria inno... [more]
GCSH_KLEP71.313e-3150.41Glycine cleavage system H protein OS=Klebsiella pn... [more]
GCSH_XYLFT1.714e-3149.19Glycine cleavage system H protein OS=Xylella fasti... [more]
GCSH_XYLFM1.714e-3150.00Glycine cleavage system H protein OS=Xylella fasti... [more]

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Properties
Property NameValue
Genbank descriptionC03003A09SK OF2 Citrus clementina cDNA clone C03003A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291022 ID=CX291022; Name=CX291022; organism=Citrus clementina; type=EST; length=389bp
TTATAAAGGATCTAAAGTATGCTGACTCTCATGAATGGGTTAAGGTTGAT
GGTAACTCTGCAACCATTGGTATAACTGACCATGCTCAAGATCATTTAGG
CGATGTTGTGTATGTTGAATTACCAGAGGTAGGGGTTACAGTAAAGCAAG
GTGCCAGCTTTGGTGCAGTTGAAAGTGTCAAGGCTACTAGTGATGTTAAT
TCTCCTGTTTCTGGGAAAGTGGTTGAAGTTAATGAAGAGCTCAGCAGTTC
ACCTGCTTTGGTCAACTCAAGCCCATACAAGGATGGATGGATTATAAAAG
TGGAGATGGACAGTGCTGGTGAATTGAAGAAGTTGATGGATGCTGATCAA
TACACCAAGTTCTGTGAAGAAGAAGATTCAAAACACTGA
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