CX291022

Overview
NameCX291022
Unique NameCX291022
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length389
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_XYLFA (Glycine cleavage system H protein OS=Xylella fastidiosa GN=gcvH PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 1.714e-31
Identity = 62/124 (50.00%), Postives = 85/124 (68.55%), Query Frame = 3
Query:    9 DLKYADSHEWVKV-DGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEED 377
            DLK+  SHEWV++ D N A +GI+DHAQ+ LGD+VYVELP +G  +  G +   +ESVKA SD+ SPV+GKV+EVN  LS  P  +N  PY +GWI+ +EM +  E+  L+  D YTK  E ++
Sbjct:    7 DLKFLKSHEWVRIEDNNRAIVGISDHAQNLLGDLVYVELPNIGDHLDAGTTAAVIESVKAASDIYSPVTGKVIEVNTTLSDKPETINEDPYGEGWIMVIEMQAPEEISDLLSPDDYTKVLESDE 130          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_XYLF2 (Glycine cleavage system H protein OS=Xylella fastidiosa (strain M23) GN=gcvH PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.714e-31
Identity = 61/124 (49.19%), Postives = 86/124 (69.35%), Query Frame = 3
Query:    9 DLKYADSHEWVKV-DGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEED 377
            DLK+  SHEWV++ D N A +G++DHAQ+ LGD+VYVELP +G  +  GA+   +ESVKA SD+ SPV+GKV+EVN  LS  P  +N  PY +GWI+ +EM +  E+  L+  D YT+  E ++
Sbjct:    7 DLKFLKSHEWVRIEDNNRAIVGVSDHAQNLLGDLVYVELPNIGDHLDAGATAAVIESVKAASDIYSPVTGKVIEVNTTLSDKPETINEDPYGEGWIMVIEMQAPEEISNLLSPDDYTEVLESDE 130          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_PROMH (Glycine cleavage system H protein OS=Proteus mirabilis (strain HI4320) GN=gcvH PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.714e-31
Identity = 63/124 (50.81%), Postives = 86/124 (69.35%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSA-TIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEED 377
            +LKYA SHEW++ +GN   TIGIT+HAQ+ LGD+V+V+LP+VG  V  G      ESVKA SD+ +P+SG+++ VNEEL  SP LVNS PY DGW+ +++     EL  L+DA  Y +  E E+
Sbjct:    7 ELKYAQSHEWIRSEGNGEYTIGITEHAQELLGDMVFVDLPDVGSEVDLGDDCAVAESVKAASDIYAPLSGEIIAVNEELDGSPELVNSDPYGDGWLFRIKAKDESELNDLLDAAGYQELVENEE 130          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_ECO7I (Glycine cleavage system H protein OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=gcvH PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.239e-31
Identity = 63/123 (51.22%), Postives = 85/123 (69.11%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSA-TIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            +LKY+  HEW++ + +   T+GIT+HAQ+ LGD+V+V+LPEVG TV  G      ESVKA SD+ +PVSG++VEVN+ LS SP LVNS PY  GWI K++     EL+ L+DA  Y    E+E
Sbjct:    7 ELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVEVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_BACA2 (Glycine cleavage system H protein OS=Bacillus amyloliquefaciens (strain FZB42) GN=gcvH PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.239e-31
Identity = 62/123 (50.41%), Postives = 85/123 (69.11%), Query Frame = 3
Query:    6 KDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            KD++Y+  HEWVKV+   A IGIT  AQ  LGD+V+VELPEVG  +K    FG+VESVK  S++ +P++G V EVNE+L  SP  VN SPY+  W+I VE   A E++ LM ++QY +  +E+
Sbjct:    5 KDMRYSKEHEWVKVEDGKARIGITHFAQAELGDIVFVELPEVGAEIKADEPFGSVESVKTVSELYAPINGTVTEVNEDLDDSPEFVNESPYEKAWMIVVEPADAEEIENLMTSEQYDEMTQED 127          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_ACIBL (Glycine cleavage system H protein OS=Acidobacteria bacterium (strain Ellin345) GN=gcvH PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.239e-31
Identity = 66/122 (54.10%), Postives = 85/122 (69.67%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            D KY   HEW+  DG    IGITDHAQ  LGD+V+VELP+VG T+ +G SFG+VESVKA SD+ +PVSGKV  VNEEL+++P  VN+  +   W++KVE+ +  EL  L+ A  Y KF  EE
Sbjct:    6 DFKYTKEHEWISADGK---IGITDHAQSSLGDIVFVELPKVGATITKGQSFGSVESVKAVSDLFAPVSGKVTAVNEELATTPEKVNTDAHA-AWMVKVELTNPSELNDLLSAADYEKFAAEE 123          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_XANAC (Glycine cleavage system H protein OS=Xanthomonas axonopodis pv. citri GN=gcvH PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.924e-31
Identity = 67/124 (54.03%), Postives = 82/124 (66.13%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNS-ATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEED 377
            DLK+  SHEW +V+ N   T+GI+DHAQ  LGD+VYVELP VG TV+ G     VESVKA SDV SPVSG VVEVN  LS  P  +N   Y +GWI  VE+D   +L  L+D D Y +  E++D
Sbjct:    7 DLKFLKSHEWARVESNGRVTVGISDHAQGLLGDLVYVELPGVGDTVQVGNGAAVVESVKAASDVYSPVSGTVVEVNSALSDKPETINEDAYGEGWIFVVEIDDKEQLNDLLDPDDYAELLEDDD 130          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_ACIBY (Glycine cleavage system H protein OS=Acinetobacter baumannii (strain AYE) GN=gcvH PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.924e-31
Identity = 62/115 (53.91%), Postives = 80/115 (69.57%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQY 353
            +LKYA +HEWVK++G+    GITDHAQD LGD+VYVE PEVG  V  G   G VESVK  SD+++PVSG VVEVN +L   P  VN  PY  GWI K++ D+  +++KL+   +Y
Sbjct:    6 ELKYARTHEWVKIEGDLVITGITDHAQDELGDLVYVETPEVGSQVTAGEQAGVVESVKTASDIHAPVSGTVVEVNTDLEDDPDFVNEDPYGKGWIYKIKPDNIADVEKLLTNAEY 120          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_ACIBT (Glycine cleavage system H protein OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=gcvH PE=3 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 2.924e-31
Identity = 62/115 (53.91%), Postives = 80/115 (69.57%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQY 353
            +LKYA +HEWVK++G+    GITDHAQD LGD+VYVE PEVG  V  G   G VESVK  SD+++PVSG VVEVN +L   P  VN  PY  GWI K++ D+  +++KL+   +Y
Sbjct:    6 ELKYARTHEWVKIEGDLVITGITDHAQDELGDLVYVETPEVGSQVTAGEQAGVVESVKTASDIHAPVSGTVVEVNTDLEDDPDFVNEDPYGKGWIYKIKPDNIADVEKLLTNAEY 120          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_ACIBC (Glycine cleavage system H protein OS=Acinetobacter baumannii (strain ACICU) GN=gcvH PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.924e-31
Identity = 62/115 (53.91%), Postives = 80/115 (69.57%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQY 353
            +LKYA +HEWVK++G+    GITDHAQD LGD+VYVE PEVG  V  G   G VESVK  SD+++PVSG VVEVN +L   P  VN  PY  GWI K++ D+  +++KL+   +Y
Sbjct:    6 ELKYARTHEWVKIEGDLVITGITDHAQDELGDLVYVETPEVGSQVTAGEQAGVVESVKTASDIHAPVSGTVVEVNTDLEDDPDFVNEDPYGKGWIYKIKPDNIADVEKLLTNAEY 120          
The following BLAST results are available for this feature:
BLAST of CX291022 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 462
Match NameE-valueIdentityDescription
GCSH_XYLFA1.714e-3150.00Glycine cleavage system H protein OS=Xylella fasti... [more]
GCSH_XYLF21.714e-3149.19Glycine cleavage system H protein OS=Xylella fasti... [more]
GCSH_PROMH1.714e-3150.81Glycine cleavage system H protein OS=Proteus mirab... [more]
GCSH_ECO7I2.239e-3151.22Glycine cleavage system H protein OS=Escherichia c... [more]
GCSH_BACA22.239e-3150.41Glycine cleavage system H protein OS=Bacillus amyl... [more]
GCSH_ACIBL2.239e-3154.10Glycine cleavage system H protein OS=Acidobacteria... [more]
GCSH_XANAC2.924e-3154.03Glycine cleavage system H protein OS=Xanthomonas a... [more]
GCSH_ACIBY2.924e-3153.91Glycine cleavage system H protein OS=Acinetobacter... [more]
GCSH_ACIBT2.924e-3153.91Glycine cleavage system H protein OS=Acinetobacter... [more]
GCSH_ACIBC2.924e-3153.91Glycine cleavage system H protein OS=Acinetobacter... [more]

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Properties
Property NameValue
Genbank descriptionC03003A09SK OF2 Citrus clementina cDNA clone C03003A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291022 ID=CX291022; Name=CX291022; organism=Citrus clementina; type=EST; length=389bp
TTATAAAGGATCTAAAGTATGCTGACTCTCATGAATGGGTTAAGGTTGAT
GGTAACTCTGCAACCATTGGTATAACTGACCATGCTCAAGATCATTTAGG
CGATGTTGTGTATGTTGAATTACCAGAGGTAGGGGTTACAGTAAAGCAAG
GTGCCAGCTTTGGTGCAGTTGAAAGTGTCAAGGCTACTAGTGATGTTAAT
TCTCCTGTTTCTGGGAAAGTGGTTGAAGTTAATGAAGAGCTCAGCAGTTC
ACCTGCTTTGGTCAACTCAAGCCCATACAAGGATGGATGGATTATAAAAG
TGGAGATGGACAGTGCTGGTGAATTGAAGAAGTTGATGGATGCTGATCAA
TACACCAAGTTCTGTGAAGAAGAAGATTCAAAACACTGA
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