CX291022

Overview
NameCX291022
Unique NameCX291022
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length389
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_ACIB5 (Glycine cleavage system H protein OS=Acinetobacter baumannii (strain AB0057) GN=gcvH PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.924e-31
Identity = 62/115 (53.91%), Postives = 80/115 (69.57%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQY 353
            +LKYA +HEWVK++G+    GITDHAQD LGD+VYVE PEVG  V  G   G VESVK  SD+++PVSG VVEVN +L   P  VN  PY  GWI K++ D+  +++KL+   +Y
Sbjct:    6 ELKYARTHEWVKIEGDLVITGITDHAQDELGDLVYVETPEVGSQVTAGEQAGVVESVKTASDIHAPVSGTVVEVNTDLEDDPDFVNEDPYGKGWIYKIKPDNIADVEKLLTNAEY 120          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_ACIB3 (Glycine cleavage system H protein OS=Acinetobacter baumannii (strain AB307-0294) GN=gcvH PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.924e-31
Identity = 62/115 (53.91%), Postives = 80/115 (69.57%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQY 353
            +LKYA +HEWVK++G+    GITDHAQD LGD+VYVE PEVG  V  G   G VESVK  SD+++PVSG VVEVN +L   P  VN  PY  GWI K++ D+  +++KL+   +Y
Sbjct:    6 ELKYARTHEWVKIEGDLVITGITDHAQDELGDLVYVETPEVGSQVTAGEQAGVVESVKTASDIHAPVSGTVVEVNTDLEDDPDFVNEDPYGKGWIYKIKPDNIADVEKLLTNAEY 120          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_VIBFM (Glycine cleavage system H protein OS=Vibrio fischeri (strain MJ11) GN=gcvH PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.819e-31
Identity = 63/124 (50.81%), Postives = 88/124 (70.97%), Query Frame = 3
Query:    6 KDLKYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            KDLK+  SHEWV+ +G+ + T+GI+DHAQ  LGDVV+V+LP+V   V  G  F  VESVKA SD+ SPV+G +VE+NEEL  SP  VN  PY+ GWI ++++  + EL+ L+ +D Y +  +EE
Sbjct:    3 KDLKFTASHEWVRDNGDGTVTVGISDHAQGLLGDVVFVDLPDVDDEVTAGEGFSLVESVKAASDIYSPVTGVIVEINEELEDSPEQVNEEPYESGWIARIKLSDSSELESLIPSDTYLESLDEE 126          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_PHOLL (Glycine cleavage system H protein OS=Photorhabdus luminescens subsp. laumondii GN=gcvH PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.819e-31
Identity = 59/124 (47.58%), Postives = 88/124 (70.97%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSA-TIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEED 377
            +LKY +SHEWV+ +GN   T+GIT+HAQ+ LGD+V+V+LPEVG  +  G     VESVKA SD+ +P+SGK++ VN+ L+ +P LVNS PY +GW+ +++     EL  L++A+ Y    +EE+
Sbjct:    7 ELKYVESHEWVRAEGNDEYTVGITEHAQELLGDMVFVDLPEVGDQINLGDDCAVVESVKAASDIYAPLSGKIIAVNDALNDAPELVNSEPYHEGWLFRIKASDKSELSSLLNAEGYQALLDEEE 130          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_PECCP (Glycine cleavage system H protein OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=gcvH PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.819e-31
Identity = 60/124 (48.39%), Postives = 88/124 (70.97%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSA-TIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEED 377
            +LKY  SHEWV  +G    ++GIT+HAQ+ LGD+V+++LPEVG  V  G      ESVKA SD+ +P+SG++VEVN++L SSP LVNS+PY DGW+ ++ +    +L +L+DA+ Y    EE++
Sbjct:    7 ELKYTTSHEWVLHEGGGIYSVGITEHAQELLGDMVFIDLPEVGTVVAAGDDCAVAESVKAASDIYAPISGEIVEVNDDLESSPELVNSAPYADGWLFRIRISDESDLDELLDAEGYQASLEEDE 130          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_SHEAM (Glycine cleavage system H protein OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=gcvH PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.988e-31
Identity = 64/123 (52.03%), Postives = 83/123 (67.48%), Query Frame = 3
Query:    9 DLKYADSHEWV-KVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            +LKYA SHEW+ K D  + T+GIT+HAQ+ LGD+V+VELPEVG TV  G      ESVKA SD+ +P+SG+V+ VNE L  SP LVNS  Y DGW  +++     EL  L+DA+ Y    +EE
Sbjct:    7 ELKYASSHEWIRKEDDGTYTVGITEHAQELLGDMVFVELPEVGDTVSAGEDCAVAESVKAASDIYAPISGEVIAVNESLEDSPELVNSDAYGDGWFFRIKPSDESELDSLLDAEGYQAVIDEE 129          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_THEP3 (Glycine cleavage system H protein OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=gcvH PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.514e-31
Identity = 65/124 (52.42%), Postives = 85/124 (68.55%), Query Frame = 3
Query:    3 IKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            I+ L Y+  HEWVKV+G+ A IGITD+AQ  LG++VY+ELPEVG  +  G   G VESVKA SDV +PV GKV+EVN  +   P+LVN+ PY   W+  VE+    +L  LM A++Y KF +EE
Sbjct:    4 IEGLYYSKDHEWVKVEGDKAYIGITDYAQHSLGNIVYIELPEVGAELSAGDVLGVVESVKAASDVYTPVDGKVLEVNNAIVDDPSLVNNDPY-GSWMALVELKDKSQLDNLMTAEEYKKFLDEE 126          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_TERTT (Glycine cleavage system H protein OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=gcvH PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.514e-31
Identity = 65/123 (52.85%), Postives = 83/123 (67.48%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            +LKY  SHEW +V+ + + TIGITDHAQ+ LGDVV+VE PEVG  V  G   G VESVKA SD+ SPV+G+V+ VNE L  +P  VN SPY +GW  KV+     EL   MD++ Y K  E++
Sbjct:    7 ELKYLSSHEWARVEEDGTVTIGITDHAQEALGDVVFVETPEVGSQVSAGEEAGVVESVKAASDIYSPVTGEVIAVNELLEEAPETVNESPYDEGWFFKVKPSDVSELDGAMDSEAYVKSVEDD 129          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_CYTH3 (Glycine cleavage system H protein OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=gcvH PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.507e-31
Identity = 61/116 (52.59%), Postives = 84/116 (72.41%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYT 356
            +LKY+  HEWV+V+G +A +GITD AQ  LGD+VY+++  VG T+ + A FG +E+VK  SD+  PVSG+V+E N EL S+P LVNS PY  GWI+KV + +A +L  L+DA  YT
Sbjct:    6 ELKYSKDHEWVRVEGQTAYVGITDFAQKELGDIVYLDVTSVGQTIDKEAIFGTIEAVKTVSDLFMPVSGEVLEFNAELESAPELVNSDPYGKGWIVKVTLANASDLDALLDAAAYT 121          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_CHRSD (Glycine cleavage system H protein OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=gcvH PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.507e-31
Identity = 63/124 (50.81%), Postives = 86/124 (69.35%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEED 377
            +L+Y DSHEWV  +G+ + TIGITDHAQ+ LGDVV+VELPE G  +  G  FG +ESVKA SD+  P+SG+++ VNE L  +P  VN +PY+DGWIIK+++     L+ L+DA  Y      E+
Sbjct:    7 NLRYTDSHEWVLDNGDGTVTIGITDHAQEALGDVVFVELPETGRELDAGEEFGVIESVKAASDLYLPLSGEIIAVNESLEDAPETVNDNPYEDGWIIKLKLAEPEALESLLDATAYDALVSAEE 130          
The following BLAST results are available for this feature:
BLAST of CX291022 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 462
Match NameE-valueIdentityDescription
GCSH_ACIB52.924e-3153.91Glycine cleavage system H protein OS=Acinetobacter... [more]
GCSH_ACIB32.924e-3153.91Glycine cleavage system H protein OS=Acinetobacter... [more]
GCSH_VIBFM3.819e-3150.81Glycine cleavage system H protein OS=Vibrio fische... [more]
GCSH_PHOLL3.819e-3147.58Glycine cleavage system H protein OS=Photorhabdus ... [more]
GCSH_PECCP3.819e-3148.39Glycine cleavage system H protein OS=Pectobacteriu... [more]
GCSH_SHEAM4.988e-3152.03Glycine cleavage system H protein OS=Shewanella am... [more]
GCSH_THEP36.514e-3152.42Glycine cleavage system H protein OS=Thermoanaerob... [more]
GCSH_TERTT6.514e-3152.85Glycine cleavage system H protein OS=Teredinibacte... [more]
GCSH_CYTH38.507e-3152.59Glycine cleavage system H protein OS=Cytophaga hut... [more]
GCSH_CHRSD8.507e-3150.81Glycine cleavage system H protein OS=Chromohalobac... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC03003A09SK OF2 Citrus clementina cDNA clone C03003A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291022 ID=CX291022; Name=CX291022; organism=Citrus clementina; type=EST; length=389bp
TTATAAAGGATCTAAAGTATGCTGACTCTCATGAATGGGTTAAGGTTGAT
GGTAACTCTGCAACCATTGGTATAACTGACCATGCTCAAGATCATTTAGG
CGATGTTGTGTATGTTGAATTACCAGAGGTAGGGGTTACAGTAAAGCAAG
GTGCCAGCTTTGGTGCAGTTGAAAGTGTCAAGGCTACTAGTGATGTTAAT
TCTCCTGTTTCTGGGAAAGTGGTTGAAGTTAATGAAGAGCTCAGCAGTTC
ACCTGCTTTGGTCAACTCAAGCCCATACAAGGATGGATGGATTATAAAAG
TGGAGATGGACAGTGCTGGTGAATTGAAGAAGTTGATGGATGCTGATCAA
TACACCAAGTTCTGTGAAGAAGAAGATTCAAAACACTGA
back to top