CX291022

Overview
NameCX291022
Unique NameCX291022
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length389
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_CLOK5 (Glycine cleavage system H protein OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=gcvH PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.406e-25
Identity = 56/123 (45.53%), Postives = 80/123 (65.04%), Query Frame = 3
Query:    6 KDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            K+L Y +SHEWVK++G+ A +G+TD+AQ  LGD+V+V LPE G  V  G  F  VESVKA SDV +P+ G + EVNEEL   P  +N +PY + W++K+      + +KL+ A++Y      E
Sbjct:    5 KELMYTESHEWVKIEGDKALVGLTDYAQSELGDLVFVNLPEEGDEVTAGEVFLDVESVKAASDVYAPLGGVIEEVNEELLDRPGWINEAPY-EAWLVKI--GEISDREKLLTAEEYEAVVNSE 124          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_CLOK1 (Glycine cleavage system H protein OS=Clostridium kluyveri (strain NBRC 12016) GN=gcvH PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.406e-25
Identity = 56/123 (45.53%), Postives = 80/123 (65.04%), Query Frame = 3
Query:    6 KDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            K+L Y +SHEWVK++G+ A +G+TD+AQ  LGD+V+V LPE G  V  G  F  VESVKA SDV +P+ G + EVNEEL   P  +N +PY + W++K+      + +KL+ A++Y      E
Sbjct:    5 KELMYTESHEWVKIEGDKALVGLTDYAQSELGDLVFVNLPEEGDEVTAGEVFLDVESVKAASDVYAPLGGVIEEVNEELLDRPGWINEAPY-EAWLVKI--GEISDREKLLTAEEYEAVVNSE 124          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_RHILW (Glycine cleavage system H protein OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=gcvH PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.836e-25
Identity = 51/114 (44.74%), Postives = 77/114 (67.54%), Query Frame = 3
Query:   12 LKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQY 353
            LK+ + HEW++++G+ AT+GIT++A D LGD+V+VELPEVG T  +  +   VESVKA SDV  P+ G++ EVN  + + P+LVNS P   GW  K+++ +  +   L+D   Y
Sbjct:    2 LKFTEEHEWLQIEGSVATVGITNYAVDQLGDLVFVELPEVGATFSKNGNAATVESVKAASDVYCPLDGEITEVNPAIVADPSLVNSDPQGAGWFFKLKLANPADADGLLDEAAY 115          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_NITEC (Glycine cleavage system H protein OS=Nitrosomonas eutropha (strain C91) GN=gcvH PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.836e-25
Identity = 55/123 (44.72%), Postives = 83/123 (67.48%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            +LKYA SHEW+K++ + + T+GIT HAQ+ LGD+V+VELP+VG  + Q      VESVKA SD+ +P+SG+V+ +N E+ SSP  +N   Y   W+ K++  +  E+  L+DA+ Y K  E +
Sbjct:    6 ELKYAKSHEWIKLEADGTVTVGITQHAQELLGDMVFVELPKVGRILAQQEDCAVVESVKAASDIYAPLSGEVIAINAEVESSPEKINEDSY-SAWLFKLKPANTAEIDGLLDANGYEKLLESD 127          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_BEII9 (Glycine cleavage system H protein OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=gcvH PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.836e-25
Identity = 53/116 (45.69%), Postives = 76/116 (65.52%), Query Frame = 3
Query:   15 KYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKF 362
            +Y   HE+++V+G + T+GITD+AQ  LGDVV+VELP +G  + +G     VESVKA S++ +PVSG+VV VNE L+ +P  VN      GW +++++  A EL  LMD   Y  F
Sbjct:    5 RYTKDHEYIRVEGETGTVGITDYAQSQLGDVVFVELPAIGKALTKGGEAAVVESVKAASEIYAPVSGEVVAVNEALAEAPGTVNEDAAGKGWFLQIKLADAKELDGLMDEAGYQDF 120          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_AGRRK (Glycine cleavage system H protein OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=gcvH PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.836e-25
Identity = 50/114 (43.86%), Postives = 75/114 (65.79%), Query Frame = 3
Query:   12 LKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQY 353
            LK+ + HEW+ ++G+ AT+GIT HA   LGD+V+VELPEVG +  +G     VESVKA S+V  P+ G++ E+NE +++ P LVNS P   GW  K+++ +  +   L+D   Y
Sbjct:    2 LKFTEEHEWLNIEGDVATVGITAHAAGQLGDLVFVELPEVGASFSKGDDAATVESVKAASEVYCPLDGEITEINEAITADPELVNSDPMGAGWFFKLKLKNVADADGLLDESGY 115          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH1_DICDI (Probable glycine cleavage system H protein 1, mitochondrial OS=Dictyostelium discoideum GN=gcvH1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.836e-25
Identity = 53/120 (44.17%), Postives = 77/120 (64.17%), Query Frame = 3
Query:   15 KYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEE 371
            +Y + HEWV   G+ +  +GITD AQ  LGD+V+VE+P++G T+ QG     VESVKA SD+  P+ G +  VN+EL SSP LVN  P  DGWI++ +     + + LM+  QY ++ +E
Sbjct:   26 RYTNDHEWVTSLGSQNYRLGITDFAQKQLGDIVFVEIPQIGATLSQGQPITVVESVKAASDIYIPMDGSITTVNQELESSPELVNEEPMGDGWIVEYKSSKTDQFQSLMNKAQYDEYIKE 145          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_THIDA (Glycine cleavage system H protein OS=Thiobacillus denitrificans (strain ATCC 25259) GN=gcvH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.398e-25
Identity = 58/123 (47.15%), Postives = 79/123 (64.23%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            DLKY  SHEWV+ + + S T+GIT HAQD LGD+V++E P VG T+ +G     VESVKA SDV +PV+G+V+  N E+ SSP  VN   Y   W+ K++  +  ++  L+DA  Y K  E E
Sbjct:    6 DLKYTQSHEWVRAEADGSVTVGITHHAQDLLGDMVFIENPAVGRTLAKGEECAVVESVKAASDVYAPVAGEVIAANGEVESSPESVNQDAY-TAWLFKIKPANPADVDALLDAAAYQKVVESE 127          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_PROMT (Glycine cleavage system H protein OS=Prochlorococcus marinus (strain NATL2A) GN=gcvH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.398e-25
Identity = 50/115 (43.48%), Postives = 81/115 (70.43%), Query Frame = 3
Query:   15 KYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTK 359
            ++ADSHE+   D +   IGI++ A D LGD+V+V+LPE G  + +G SFG+VESVKA  D+ +PVSG++V  N  + +SP  + + P+ +GW++ +  D+  +LK+LMD++ Y+K
Sbjct:   10 RFADSHEYAFADDSLVRIGISEFAVDQLGDIVFVDLPEEGTAIAKGESFGSVESVKAVEDMYAPVSGEIVHRNNSVLASPEELQNDPHGEGWLLIIRPDNPAQLKELMDSETYSK 124          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_PELPB (Glycine cleavage system H protein OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=gcvH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.398e-25
Identity = 54/124 (43.55%), Postives = 84/124 (67.74%), Query Frame = 3
Query:    6 KDLKYADSHEWVKV--DGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEE 371
            +DL+Y   HEW+K+  DG++A +GITD AQ  LGD+V+VEL   G  +KQ   FG VE+VK  +D+ +PV+G+++E+N  L S+  +VN  PY DGW++K+++ S   +  L+DA+ Y +   E
Sbjct:    5 EDLRYTKDHEWIKLLEDGSTALVGITDFAQHELGDIVFVELKSAGTVLKQHEVFGTVEAVKTVADLFAPVAGELLELNALLDSA-EIVNQDPYNDGWLVKMKVASPEAVHALLDAEAYRQLTGE 127          
The following BLAST results are available for this feature:
BLAST of CX291022 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 462
Match NameE-valueIdentityDescription
GCSH_CLOK51.406e-2545.53Glycine cleavage system H protein OS=Clostridium k... [more]
GCSH_CLOK11.406e-2545.53Glycine cleavage system H protein OS=Clostridium k... [more]
GCSH_RHILW1.836e-2544.74Glycine cleavage system H protein OS=Rhizobium leg... [more]
GCSH_NITEC1.836e-2544.72Glycine cleavage system H protein OS=Nitrosomonas ... [more]
GCSH_BEII91.836e-2545.69Glycine cleavage system H protein OS=Beijerinckia ... [more]
GCSH_AGRRK1.836e-2543.86Glycine cleavage system H protein OS=Agrobacterium... [more]
GCSH1_DICDI1.836e-2544.17Probable glycine cleavage system H protein 1, mito... [more]
GCSH_THIDA2.398e-2547.15Glycine cleavage system H protein OS=Thiobacillus ... [more]
GCSH_PROMT2.398e-2543.48Glycine cleavage system H protein OS=Prochlorococc... [more]
GCSH_PELPB2.398e-2543.55Glycine cleavage system H protein OS=Pelodictyon p... [more]

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Properties
Property NameValue
Genbank descriptionC03003A09SK OF2 Citrus clementina cDNA clone C03003A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291022 ID=CX291022; Name=CX291022; organism=Citrus clementina; type=EST; length=389bp
TTATAAAGGATCTAAAGTATGCTGACTCTCATGAATGGGTTAAGGTTGAT
GGTAACTCTGCAACCATTGGTATAACTGACCATGCTCAAGATCATTTAGG
CGATGTTGTGTATGTTGAATTACCAGAGGTAGGGGTTACAGTAAAGCAAG
GTGCCAGCTTTGGTGCAGTTGAAAGTGTCAAGGCTACTAGTGATGTTAAT
TCTCCTGTTTCTGGGAAAGTGGTTGAAGTTAATGAAGAGCTCAGCAGTTC
ACCTGCTTTGGTCAACTCAAGCCCATACAAGGATGGATGGATTATAAAAG
TGGAGATGGACAGTGCTGGTGAATTGAAGAAGTTGATGGATGCTGATCAA
TACACCAAGTTCTGTGAAGAAGAAGATTCAAAACACTGA
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