CX291022

Overview
NameCX291022
Unique NameCX291022
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length389
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_PROMM (Glycine cleavage system H protein OS=Prochlorococcus marinus (strain MIT 9313) GN=gcvH PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.976e-25
Identity = 52/122 (42.62%), Postives = 81/122 (66.39%), Query Frame = 3
Query:   15 KYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEEDS 380
            ++AD+HE+  +DG    IGI+  A D LGD+V+V+LPEVG  + +G +FG+VESVKA  D+++P+SG++V +NE + SSP  + + P+ +GW++ V      +L+ LMDA  Y      E S
Sbjct:   10 RFADTHEYASLDGELVRIGISAFAVDQLGDIVFVDLPEVGDRLNRGTTFGSVESVKAVEDLHAPISGELVRINESVLSSPDELQNDPHGEGWLLVVRPADPAQLQDLMDAATYANKVAIESS 131          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_BARQU (Glycine cleavage system H protein OS=Bartonella quintana GN=gcvH PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.976e-25
Identity = 50/117 (42.74%), Postives = 79/117 (67.52%), Query Frame = 3
Query:    3 IKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQY 353
            +  + +   HEW+ V+G   T+GIT++AQ+ LGD+V+V+LP+ G  + +G +   VESVKA SDV +P+ G+VVE+NE L++SP LVN    K+GW+ K+ +    +L+ L+D   Y
Sbjct:    1 MSQIYFTQDHEWLSVEGQVVTVGITNYAQEQLGDLVFVDLPQSGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINEALANSPELVNQKAEKEGWLWKMTVQDETQLEGLLDEAAY 117          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_PROM3 (Glycine cleavage system H protein OS=Prochlorococcus marinus (strain MIT 9303) GN=gcvH PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.111e-25
Identity = 49/113 (43.36%), Postives = 80/113 (70.80%), Query Frame = 3
Query:   15 KYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQY 353
            ++AD+HE+  +DG+   +GI+  A D LGD+V+V+LPEVG  + +G +FG+VESVKA  D+++P+SG++V +NE + SSP  + + P+ +GW++ V      +L+ LMDA  Y
Sbjct:   10 RFADTHEYASLDGDLVRVGISAFAVDQLGDIVFVDLPEVGDLLNRGTTFGSVESVKAVEDLHAPISGELVRINESVLSSPDELQNDPHGEGWLLVVRPADPAQLQDLMDAATY 122          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_MYCLE (Glycine cleavage system H protein OS=Mycobacterium leprae GN=gcvH PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.111e-25
Identity = 57/120 (47.50%), Postives = 76/120 (63.33%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDG-NSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKK----LMDADQY 353
            DL Y   HEW++    ++  +G+TD AQ  LGDVV+V+LPEVG  +  G SFG VES K+ SD+ +PVSG V  VN +L  SP LVNS PY  GW++ V +   G L+     L+DA+ Y
Sbjct:    7 DLHYTAEHEWIRRSREDTVRVGLTDFAQSTLGDVVFVQLPEVGAELAAGKSFGEVESTKSVSDLYAPVSGTVSAVNTDLEGSPQLVNSDPYGAGWLLDVHVSDVGALESAIATLLDAETY 126          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_MYCLB (Glycine cleavage system H protein OS=Mycobacterium leprae (strain Br4923) GN=gcvH PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.111e-25
Identity = 57/120 (47.50%), Postives = 76/120 (63.33%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDG-NSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKK----LMDADQY 353
            DL Y   HEW++    ++  +G+TD AQ  LGDVV+V+LPEVG  +  G SFG VES K+ SD+ +PVSG V  VN +L  SP LVNS PY  GW++ V +   G L+     L+DA+ Y
Sbjct:    7 DLHYTAEHEWIRRSREDTVRVGLTDFAQSTLGDVVFVQLPEVGAELAAGKSFGEVESTKSVSDLYAPVSGTVSAVNTDLEGSPQLVNSDPYGAGWLLDVHVSDVGALESAIATLLDAETY 126          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_MICAN (Glycine cleavage system H protein OS=Microcystis aeruginosa (strain NIES-843) GN=gcvH PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.111e-25
Identity = 51/117 (43.59%), Postives = 82/117 (70.09%), Query Frame = 3
Query:    6 KDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAG-ELKKLMDADQY 353
            +DL+Y ++HE+V+++G  AT+GI+  A D LGD+V++ELPE+G  +K G+SFG +ESVKA  D+  PVSG VV+ N+ +  SP L+   P+ +GW++KV +++    L   + A +Y
Sbjct:    7 EDLRYLETHEYVRLEGEIATLGISAFAVDQLGDIVFLELPELGEALKVGSSFGTIESVKAVEDLYPPVSGTVVDRNQAMIDSPELIADDPHGEGWLLKVRVENPDTALADTLSASEY 123          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_METS4 (Glycine cleavage system H protein OS=Methylobacterium sp. (strain 4-46) GN=gcvH PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.111e-25
Identity = 49/114 (42.98%), Postives = 77/114 (67.54%), Query Frame = 3
Query:   12 LKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQY 353
            L++ + HEW++++G+ AT+GIT HA + LGD+V+V+LP+VG T+ +GA+   VESVKA SDV +P+ G+V E N+ + ++P  VN  P   GW+ ++ +     L  LMD   Y
Sbjct:    2 LRFTEDHEWLRLEGDVATVGITRHAAEQLGDLVFVDLPKVGTTLSKGAAAAVVESVKAASDVYAPLDGEVTEANDAVVAAPETVNQDPEGAGWLYRMRLADPSSLDALMDEAAY 115          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_AGRVS (Glycine cleavage system H protein OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=gcvH PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.111e-25
Identity = 50/116 (43.10%), Postives = 76/116 (65.52%), Query Frame = 3
Query:   12 LKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTK 359
            LK+   HEW++++G+ AT+GIT HA + LGD+V+VELPEVG T  +      VESVKA SDV  P+ G+V E+N+ +   P+LVNS P   GW  K+++ +  + + L++   Y +
Sbjct:    2 LKFTSEHEWLQIEGDIATVGITAHAAEQLGDLVFVELPEVGATFAKDGQAATVESVKAASDVYCPLDGEVTEINQAIVDDPSLVNSDPRGAGWFFKLKLANPADAEGLLNEAAYNE 117          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_PYRKO (Probable glycine cleavage system H protein OS=Pyrococcus kodakaraensis GN=gcvH PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.190e-24
Identity = 59/119 (49.58%), Postives = 79/119 (66.39%), Query Frame = 3
Query:   12 LKYADSHEWVKV-DGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVE-MDSAGELKKLMDADQYTKF 362
            L Y   HEW +V D  +  +GI+D+AQ  LGD+ YVELPEVG  V +G     +ESVKA S+V +PVSG+V+EVNE L  SP L+N  PY + WI K++  +   ELK+LMDA  Y ++
Sbjct:   13 LYYTKDHEWAQVLDDGTVLVGISDYAQKELGDLAYVELPEVGKEVSKGDVLCEIESVKAVSEVYAPVSGEVIEVNEALEDSPELLNEDPY-ENWIAKLKPTNLEEELKELMDAQAYAEY 130          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_CLAMS (Glycine cleavage system H protein OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=gcvH PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.190e-24
Identity = 53/120 (44.17%), Postives = 78/120 (65.00%), Query Frame = 3
Query:   12 LKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEE 371
            L+Y   HEWV +DG+ AT+GIT +A D LGDVV+VELP VG  +  G+  G +ES K+  ++ +P+ G V EVN+++ +SP LVNS P+  GW++KV  ++   L  L+  D+Y     E
Sbjct:    7 LQYTAEHEWVLIDGDVATVGITSYAADKLGDVVFVELPAVGDELAGGSVVGEIESTKSVGELFAPIDGTVTEVNDDVVASPDLVNSDPFGAGWLVKVRFEA---LPTLLSHDEYVALVGE 123          
The following BLAST results are available for this feature:
BLAST of CX291022 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 462
Match NameE-valueIdentityDescription
GCSH_PROMM6.976e-2542.62Glycine cleavage system H protein OS=Prochlorococc... [more]
GCSH_BARQU6.976e-2542.74Glycine cleavage system H protein OS=Bartonella qu... [more]
GCSH_PROM39.111e-2543.36Glycine cleavage system H protein OS=Prochlorococc... [more]
GCSH_MYCLE9.111e-2547.50Glycine cleavage system H protein OS=Mycobacterium... [more]
GCSH_MYCLB9.111e-2547.50Glycine cleavage system H protein OS=Mycobacterium... [more]
GCSH_MICAN9.111e-2543.59Glycine cleavage system H protein OS=Microcystis a... [more]
GCSH_METS49.111e-2542.98Glycine cleavage system H protein OS=Methylobacter... [more]
GCSH_AGRVS9.111e-2543.10Glycine cleavage system H protein OS=Agrobacterium... [more]
GCSH_PYRKO1.190e-2449.58Probable glycine cleavage system H protein OS=Pyro... [more]
GCSH_CLAMS1.190e-2444.17Glycine cleavage system H protein OS=Clavibacter m... [more]

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Properties
Property NameValue
Genbank descriptionC03003A09SK OF2 Citrus clementina cDNA clone C03003A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291022 ID=CX291022; Name=CX291022; organism=Citrus clementina; type=EST; length=389bp
TTATAAAGGATCTAAAGTATGCTGACTCTCATGAATGGGTTAAGGTTGAT
GGTAACTCTGCAACCATTGGTATAACTGACCATGCTCAAGATCATTTAGG
CGATGTTGTGTATGTTGAATTACCAGAGGTAGGGGTTACAGTAAAGCAAG
GTGCCAGCTTTGGTGCAGTTGAAAGTGTCAAGGCTACTAGTGATGTTAAT
TCTCCTGTTTCTGGGAAAGTGGTTGAAGTTAATGAAGAGCTCAGCAGTTC
ACCTGCTTTGGTCAACTCAAGCCCATACAAGGATGGATGGATTATAAAAG
TGGAGATGGACAGTGCTGGTGAATTGAAGAAGTTGATGGATGCTGATCAA
TACACCAAGTTCTGTGAAGAAGAAGATTCAAAACACTGA
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