CX291022

Overview
NameCX291022
Unique NameCX291022
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length389
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_AZOSE (Glycine cleavage system H protein OS=Azoarcus sp. (strain EbN1) GN=gcvH PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.905e-24
Identity = 52/116 (44.83%), Postives = 79/116 (68.10%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQY 353
            +LKY  SHEW++V+ + S TIG+TDHAQ+ LGDVV++ELPE G  +  G +   +ESVKA SD+ +PV G+V+  N++   +P  VN+  Y   W+ K++  +AG++  L+DA  Y
Sbjct:    7 ELKYTKSHEWIRVEADGSLTIGVTDHAQEALGDVVFLELPEAGRQLAAGEACAVIESVKAASDIYAPVDGEVIASNQDAVDAPESVNADAYA-AWLFKLKPANAGDVAALLDAQGY 121          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_THEAC (Probable glycine cleavage system H protein OS=Thermoplasma acidophilum GN=gcvH PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.713e-24
Identity = 53/119 (44.54%), Postives = 76/119 (63.87%), Query Frame = 3
Query:   12 LKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCE 368
            L Y  +HEW + DGN+ATIGITD+AQ  + D+VYV+LP+VG   K G     +ESVK+  DV SP++G V  VNEE++  P  +N  PY   W++K+ ++S GE    + A +Y K  +
Sbjct:   10 LNYTKTHEWYRKDGNTATIGITDYAQSQMTDIVYVDLPKVGDKKKAGDVLLTIESVKSAEDVYSPITGTVTAVNEEVAKHPESINKDPY-GSWLVKMAIESEGE---HLSASEYRKLIQ 124          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_AZOSB (Glycine cleavage system H protein OS=Azoarcus sp. (strain BH72) GN=gcvH PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.007e-23
Identity = 51/116 (43.97%), Postives = 78/116 (67.24%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSA-TIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQY 353
            DLKY  SHEW++++ +   T+G+TDHAQ  LGDVV++ELPE G  V  G +   +ESVKA SD+ +PV+G+V+  N+ ++ +P  VN+  Y   W+ K++  +AG+   L+DA  Y
Sbjct:    7 DLKYTKSHEWIRLEADGTLTVGVTDHAQAALGDVVFLELPEAGRVVSAGEACAVIESVKAASDIYAPVAGEVIARNDSVTDAPESVNADAYA-AWLFKLKPANAGDTSALLDAAGY 121          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_THEEB (Glycine cleavage system H protein OS=Thermosynechococcus elongatus (strain BP-1) GN=gcvH PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.316e-23
Identity = 45/103 (43.69%), Postives = 76/103 (73.79%), Query Frame = 3
Query:    6 KDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDS 314
            +DL+Y DSHE+++++G++AT+GI+  A D LGD+V+VELP VG  ++ G  FG +ESVKA  D+ +P+ G V+ VN+ +  +P  + + PY +GW++KV++ +
Sbjct:    7 EDLQYLDSHEYLRLEGDTATLGISAFAVDQLGDIVFVELPAVGDALEPGERFGTIESVKAVEDLYAPLGGTVIAVNQAVIDNPEQIAADPYGEGWLVKVQVST 109          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_SYNS9 (Glycine cleavage system H protein OS=Synechococcus sp. (strain CC9902) GN=gcvH PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.316e-23
Identity = 48/114 (42.11%), Postives = 79/114 (69.30%), Query Frame = 3
Query:   15 KYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYT 356
            ++ADSHE+  +DG    +GI+  A D LGD+V+V+LP+VG ++ +G SFG+VESVKA  D+ +P++G+VVE NE + +SP  + + P+  GW++ V      +L+ L+D+  Y+
Sbjct:   10 RFADSHEYAHLDGELIRVGISAFAVDQLGDIVFVDLPDVGASLDKGTSFGSVESVKAVEDMYAPIAGEVVERNEAVLASPEELQNDPHGAGWLLVVRPSDPAQLETLLDSATYS 123          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_MAGSA (Glycine cleavage system H protein OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=gcvH PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.316e-23
Identity = 52/116 (44.83%), Postives = 72/116 (62.07%), Query Frame = 3
Query:   15 KYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKF 362
            ++   HEW++VDG+  T+GI+D+AQ  LGDVV+VE+PE G  V +GA    VESVKA S+V SPVSG V   N+ +   P LVN +     W  K+ + + GE+  LMD   Y  +
Sbjct:    5 RFTKDHEWIEVDGDVGTVGISDYAQHALGDVVFVEVPEPGRVVAKGAEAAVVESVKAASEVYSPVSGTVTAGNQAIVDQPGLVNEAAEGAAWFFKLTLSNPGEVADLMDQAAYDAY 120          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_CORA7 (Glycine cleavage system H protein OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=gcvH PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.718e-23
Identity = 55/120 (45.83%), Postives = 77/120 (64.17%), Query Frame = 3
Query:    9 DLKYADSHEWVK-----VDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQY 353
            D  Y++ HEW+      V G++  IGIT  A D LG+VV+ ELP VG TV+ G + G VES K+ SD+ SPV+G V  VNE +    A++N+ P+ +GW+ +VE+  AGE   LM AD+Y
Sbjct:    7 DFSYSEDHEWINATADSVVGSTVRIGITSVATDRLGEVVFAELPAVGDTVEHGETCGEVESTKSVSDLYSPVTGTVTAVNEGVHDDYAVINNDPFGEGWLFEVEVTEAGE---LMTADEY 123          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_PROMP (Glycine cleavage system H protein OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=gcvH PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.828e-23
Identity = 48/114 (42.11%), Postives = 79/114 (69.30%), Query Frame = 3
Query:   12 LKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQY 353
            L+YAD+HE+VK +     IG+++ A D LGD+V+VEL E G  +++G +FG +ESVKA  +V  P SG+V+ VNE +  +P ++ + P  DGW++ ++ +S   L +LM++D+Y
Sbjct:    9 LRYADTHEYVKEENGLFKIGVSEFAIDQLGDIVFVELVEKGTNLQKGETFGTIESVKAVEEVYLPFSGEVISVNEGVIDNPEILQNDPIGDGWLLIIKSESNVLLDELMNSDEY 122          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_DECAR (Glycine cleavage system H protein OS=Dechloromonas aromatica (strain RCB) GN=gcvH PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.828e-23
Identity = 53/116 (45.69%), Postives = 75/116 (64.66%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQY 353
            +LKY  SHEW+ ++ + S T+GITDHAQ+ LGD+V+VELPEVG           VESVKA +DV +P++G V EVN+  + +P  VN   Y   W+ K+  D+  +L K++DA  Y
Sbjct:    7 NLKYTASHEWMLLNADGSVTVGITDHAQEALGDLVFVELPEVGAHFDAEKEIAVVESVKAAADVYAPIAGTVTEVNQAAADAPESVNQDAYA-AWLFKMTPDNVADLDKMLDAAAY 121          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_SYNPW (Glycine cleavage system H protein OS=Synechococcus sp. (strain WH7803) GN=gcvH PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.529e-23
Identity = 47/113 (41.59%), Postives = 78/113 (69.03%), Query Frame = 3
Query:   15 KYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQY 353
            +YADSHE+   D  +  IG++ +A D LGD+V+V+LPEVG  + +G+SFG VESVKA  ++ +P+SG V++ NE L ++P  + + P+ +GW++ ++     ++ +LMDA  Y
Sbjct:   10 RYADSHEYAWQDAAAVRIGLSAYAVDQLGDIVFVDLPEVGAELNRGSSFGTVESVKAVEEMYAPLSGVVLQRNEALLANPEELQNDPHGEGWLLVIQPGDPSQMDQLMDAATY 122          
The following BLAST results are available for this feature:
BLAST of CX291022 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 462
Match NameE-valueIdentityDescription
GCSH_AZOSE5.905e-2444.83Glycine cleavage system H protein OS=Azoarcus sp. ... [more]
GCSH_THEAC7.713e-2444.54Probable glycine cleavage system H protein OS=Ther... [more]
GCSH_AZOSB1.007e-2343.97Glycine cleavage system H protein OS=Azoarcus sp. ... [more]
GCSH_THEEB1.316e-2343.69Glycine cleavage system H protein OS=Thermosynecho... [more]
GCSH_SYNS91.316e-2342.11Glycine cleavage system H protein OS=Synechococcus... [more]
GCSH_MAGSA1.316e-2344.83Glycine cleavage system H protein OS=Magnetospiril... [more]
GCSH_CORA71.718e-2345.83Glycine cleavage system H protein OS=Corynebacteri... [more]
GCSH_PROMP3.828e-2342.11Glycine cleavage system H protein OS=Prochlorococc... [more]
GCSH_DECAR3.828e-2345.69Glycine cleavage system H protein OS=Dechloromonas... [more]
GCSH_SYNPW6.529e-2341.59Glycine cleavage system H protein OS=Synechococcus... [more]

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Properties
Property NameValue
Genbank descriptionC03003A09SK OF2 Citrus clementina cDNA clone C03003A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291022 ID=CX291022; Name=CX291022; organism=Citrus clementina; type=EST; length=389bp
TTATAAAGGATCTAAAGTATGCTGACTCTCATGAATGGGTTAAGGTTGAT
GGTAACTCTGCAACCATTGGTATAACTGACCATGCTCAAGATCATTTAGG
CGATGTTGTGTATGTTGAATTACCAGAGGTAGGGGTTACAGTAAAGCAAG
GTGCCAGCTTTGGTGCAGTTGAAAGTGTCAAGGCTACTAGTGATGTTAAT
TCTCCTGTTTCTGGGAAAGTGGTTGAAGTTAATGAAGAGCTCAGCAGTTC
ACCTGCTTTGGTCAACTCAAGCCCATACAAGGATGGATGGATTATAAAAG
TGGAGATGGACAGTGCTGGTGAATTGAAGAAGTTGATGGATGCTGATCAA
TACACCAAGTTCTGTGAAGAAGAAGATTCAAAACACTGA
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