CX291022

Overview
NameCX291022
Unique NameCX291022
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length389
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX291022_ssr281 microsatellite CX291022_ssr281:281..292. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH2_AQUAE (Glycine cleavage system H protein 2 OS=Aquifex aeolicus GN=gcvH2 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.782e-12
Identity = 37/102 (36.27%), Postives = 58/102 (56.86%), Query Frame = 3
Query:    6 KDLKY-ADSHEWVKV-DGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVE 305
            KDL Y  ++  W KV +  + T+G+TD  Q   G ++ + +   G  VK+G    ++ES K    V + + G+VVE NE+L   P L+N  PY +GWI K++
Sbjct:   15 KDLYYDIENQVWFKVNEDGTVTVGVTDIGQARAGKIINIRIKPPGKYVKKGKPVASLESGKWAGPVPADIEGEVVERNEKLFDKPDLINEDPYGEGWIAKLK 116          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH3_SULSO (Probable glycine cleavage system H protein 3 OS=Sulfolobus solfataricus GN=gcvH3 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.328e-12
Identity = 41/125 (32.80%), Postives = 67/125 (53.60%), Query Frame = 3
Query:    9 DLKYA-DSHEWVKVDGNSA-TIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQ--YTKFCEE 371
            DL Y  + H WV+++ NS  +IG+TD  Q   G +  V   + G  V   +   ++ES K       P+ G+V +VNEE+  +P+++N  PY D WI+K+ ++    +K+     Q  Y +F EE
Sbjct:   11 DLLYEPEKHVWVRIEDNSVVSIGVTDLGQYMAGKIFQVTAKQKGEKVNGRSVLFSIESAKWIGKFRLPIEGEVFDVNEEVVKNPSIINERPY-DSWIVKIRVEDMDIIKRTFKPIQEVYKQFEEE 134          
The following BLAST results are available for this feature:
BLAST of CX291022 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 462
Match NameE-valueIdentityDescription
GCSH2_AQUAE1.782e-1236.27Glycine cleavage system H protein 2 OS=Aquifex aeo... [more]
GCSH3_SULSO2.328e-1232.80Probable glycine cleavage system H protein 3 OS=Su... [more]

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Properties
Property NameValue
Genbank descriptionC03003A09SK OF2 Citrus clementina cDNA clone C03003A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291022 ID=CX291022; Name=CX291022; organism=Citrus clementina; type=EST; length=389bp
TTATAAAGGATCTAAAGTATGCTGACTCTCATGAATGGGTTAAGGTTGAT
GGTAACTCTGCAACCATTGGTATAACTGACCATGCTCAAGATCATTTAGG
CGATGTTGTGTATGTTGAATTACCAGAGGTAGGGGTTACAGTAAAGCAAG
GTGCCAGCTTTGGTGCAGTTGAAAGTGTCAAGGCTACTAGTGATGTTAAT
TCTCCTGTTTCTGGGAAAGTGGTTGAAGTTAATGAAGAGCTCAGCAGTTC
ACCTGCTTTGGTCAACTCAAGCCCATACAAGGATGGATGGATTATAAAAG
TGGAGATGGACAGTGCTGGTGAATTGAAGAAGTTGATGGATGCTGATCAA
TACACCAAGTTCTGTGAAGAAGAAGATTCAAAACACTGA
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