CX291022

Overview
NameCX291022
Unique NameCX291022
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length389
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_STAEQ (Glycine cleavage system H protein OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gcvH PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.820e-34
Identity = 62/121 (51.24%), Postives = 91/121 (75.21%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEE 371
            + KY+  HEWVK++ N ATIGIT++AQ+ LGD+V+VELPE    + +G +FG+VESVK  S++ +P+SGK+VEVNEEL  SP  VN SPY+  W++K+E+    +L++L+ ADQY++   E
Sbjct:    6 EFKYSKEHEWVKIENNVATIGITEYAQNELGDIVFVELPETDDELNEGDTFGSVESVKTVSELYAPISGKIVEVNEELEDSPEFVNESPYEKAWMVKIEISDDSQLEELLSADQYSEMIGE 126          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_STAES (Glycine cleavage system H protein OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gcvH PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.295e-34
Identity = 61/121 (50.41%), Postives = 91/121 (75.21%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEE 371
            + KY+  HEWVK++ N AT+GIT++AQ+ LGD+V+VELPE    + +G +FG+VESVK  S++ +P+SGK+VEVNEEL  SP  VN SPY+  W++K+E+    +L++L+ ADQY++   E
Sbjct:    6 EFKYSKEHEWVKIENNVATVGITEYAQNELGDIVFVELPETDDELNEGDTFGSVESVKTVSELYAPISGKIVEVNEELEDSPEFVNESPYEKAWMVKIEISDDSQLEELLSADQYSEMIGE 126          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_AERHH (Glycine cleavage system H protein OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=gcvH PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.221e-34
Identity = 67/123 (54.47%), Postives = 89/123 (72.36%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNS-ATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            +LKYA SHEW++V+ N  A +GIT+HAQ+ LGD+V+V+LPEVG  V  G      ESVKA SD+ SPVSG+++ VNEEL  SP LVNS PY  GW+ ++++D AGEL  L+DA+ Y    +EE
Sbjct:    7 ELKYATSHEWIRVEANGEAVVGITEHAQELLGDMVFVDLPEVGKQVGAGDDCAVAESVKAASDIYSPVSGEILAVNEELEGSPELVNSDPYGAGWLFRIKLDDAGELANLLDAEGYQNVVDEE 129          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_VIBCM (Glycine cleavage system H protein OS=Vibrio cholerae serotype O1 (strain M66-2) GN=gcvH PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.074e-33
Identity = 67/124 (54.03%), Postives = 91/124 (73.39%), Query Frame = 3
Query:    6 KDLKYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            K LK+ +SHEWV+ +G+ + TIGI++HAQ+ LGDVV+VELPE+   +  G SF  VESVKA SD+ +PV+G V+EVNE+L +SP L+N  PY  GWI+KV+M    ELK L DA++Y    EE+
Sbjct:    3 KTLKFTESHEWVRDNGDGTVTIGISEHAQEMLGDVVFVELPEIDAEIDAGDSFSLVESVKAASDIYAPVTGVVIEVNEDLQNSPELINEEPYDGGWIVKVKMSDPDELKDLKDAEEYLASIEED 126          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_VIBCH (Glycine cleavage system H protein OS=Vibrio cholerae GN=gcvH PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.074e-33
Identity = 67/124 (54.03%), Postives = 91/124 (73.39%), Query Frame = 3
Query:    6 KDLKYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            K LK+ +SHEWV+ +G+ + TIGI++HAQ+ LGDVV+VELPE+   +  G SF  VESVKA SD+ +PV+G V+EVNE+L +SP L+N  PY  GWI+KV+M    ELK L DA++Y    EE+
Sbjct:    3 KTLKFTESHEWVRDNGDGTVTIGISEHAQEMLGDVVFVELPEIDAEIDAGDSFSLVESVKAASDIYAPVTGVVIEVNEDLQNSPELINEEPYDGGWIVKVKMSDPDELKDLKDAEEYLASIEED 126          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_VIBC3 (Glycine cleavage system H protein OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=gcvH PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.074e-33
Identity = 67/124 (54.03%), Postives = 91/124 (73.39%), Query Frame = 3
Query:    6 KDLKYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            K LK+ +SHEWV+ +G+ + TIGI++HAQ+ LGDVV+VELPE+   +  G SF  VESVKA SD+ +PV+G V+EVNE+L +SP L+N  PY  GWI+KV+M    ELK L DA++Y    EE+
Sbjct:    3 KTLKFTESHEWVRDNGDGTVTIGISEHAQEMLGDVVFVELPEIDAEIDAGDSFSLVESVKAASDIYAPVTGVVIEVNEDLQNSPELINEEPYDGGWIVKVKMSDPDELKDLKDAEEYLASIEED 126          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_STAAT (Glycine cleavage system H protein OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=gcvH PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.402e-33
Identity = 63/121 (52.07%), Postives = 90/121 (74.38%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEE 371
            +LKY+  HEWVKV+GN A IGIT++AQ  LGD+V+VELPE    + +G +FG+VESVK  S++ +P+SGKVVEVNEEL  SP  VN SPY+  W++KVE+    +++ L+ A++Y++   E
Sbjct:    6 ELKYSKEHEWVKVEGNVAIIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQIEALLTAEKYSEMIGE 126          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_STAAE (Glycine cleavage system H protein OS=Staphylococcus aureus (strain Newman) GN=gcvH PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.402e-33
Identity = 63/121 (52.07%), Postives = 90/121 (74.38%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEE 371
            +LKY+  HEWVKV+GN A IGIT++AQ  LGD+V+VELPE    + +G +FG+VESVK  S++ +P+SGKVVEVNEEL  SP  VN SPY+  W++KVE+    +++ L+ A++Y++   E
Sbjct:    6 ELKYSKEHEWVKVEGNVAIIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQIEALLTAEKYSEMIGE 126          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_STAAC (Glycine cleavage system H protein OS=Staphylococcus aureus (strain COL) GN=gcvH PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.402e-33
Identity = 63/121 (52.07%), Postives = 90/121 (74.38%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEE 371
            +LKY+  HEWVKV+GN A IGIT++AQ  LGD+V+VELPE    + +G +FG+VESVK  S++ +P+SGKVVEVNEEL  SP  VN SPY+  W++KVE+    +++ L+ A++Y++   E
Sbjct:    6 ELKYSKEHEWVKVEGNVAIIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQIEALLTAEKYSEMIGE 126          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_STAA8 (Glycine cleavage system H protein OS=Staphylococcus aureus (strain NCTC 8325) GN=gcvH PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.402e-33
Identity = 63/121 (52.07%), Postives = 90/121 (74.38%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEE 371
            +LKY+  HEWVKV+GN A IGIT++AQ  LGD+V+VELPE    + +G +FG+VESVK  S++ +P+SGKVVEVNEEL  SP  VN SPY+  W++KVE+    +++ L+ A++Y++   E
Sbjct:    6 ELKYSKEHEWVKVEGNVAIIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQIEALLTAEKYSEMIGE 126          
The following BLAST results are available for this feature:
BLAST of CX291022 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 462
Match NameE-valueIdentityDescription
GCSH_STAEQ4.820e-3451.24Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_STAES6.295e-3450.41Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_AERHH8.221e-3454.47Glycine cleavage system H protein OS=Aeromonas hyd... [more]
GCSH_VIBCM1.074e-3354.03Glycine cleavage system H protein OS=Vibrio choler... [more]
GCSH_VIBCH1.074e-3354.03Glycine cleavage system H protein OS=Vibrio choler... [more]
GCSH_VIBC31.074e-3354.03Glycine cleavage system H protein OS=Vibrio choler... [more]
GCSH_STAAT1.402e-3352.07Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_STAAE1.402e-3352.07Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_STAAC1.402e-3352.07Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_STAA81.402e-3352.07Glycine cleavage system H protein OS=Staphylococcu... [more]

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Properties
Property NameValue
Genbank descriptionC03003A09SK OF2 Citrus clementina cDNA clone C03003A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291022 ID=CX291022; Name=CX291022; organism=Citrus clementina; type=EST; length=389bp
TTATAAAGGATCTAAAGTATGCTGACTCTCATGAATGGGTTAAGGTTGAT
GGTAACTCTGCAACCATTGGTATAACTGACCATGCTCAAGATCATTTAGG
CGATGTTGTGTATGTTGAATTACCAGAGGTAGGGGTTACAGTAAAGCAAG
GTGCCAGCTTTGGTGCAGTTGAAAGTGTCAAGGCTACTAGTGATGTTAAT
TCTCCTGTTTCTGGGAAAGTGGTTGAAGTTAATGAAGAGCTCAGCAGTTC
ACCTGCTTTGGTCAACTCAAGCCCATACAAGGATGGATGGATTATAAAAG
TGGAGATGGACAGTGCTGGTGAATTGAAGAAGTTGATGGATGCTGATCAA
TACACCAAGTTCTGTGAAGAAGAAGATTCAAAACACTGA
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