CX291022

Overview
NameCX291022
Unique NameCX291022
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length389
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX291022_ssr281 microsatellite CX291022_ssr281:281..292. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_STAA3 (Glycine cleavage system H protein OS=Staphylococcus aureus (strain USA300) GN=gcvH PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.402e-33
Identity = 63/121 (52.07%), Postives = 90/121 (74.38%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEE 371
            +LKY+  HEWVKV+GN A IGIT++AQ  LGD+V+VELPE    + +G +FG+VESVK  S++ +P+SGKVVEVNEEL  SP  VN SPY+  W++KVE+    +++ L+ A++Y++   E
Sbjct:    6 ELKYSKEHEWVKVEGNVAIIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQIEALLTAEKYSEMIGE 126          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_LISMO (Glycine cleavage system H protein OS=Listeria monocytogenes GN=gcvH PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.402e-33
Identity = 67/118 (56.78%), Postives = 83/118 (70.34%), Query Frame = 3
Query:    6 KDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTK 359
            KDL Y + HEWVK D  S  IGITD AQD LGD+V+VELPEVG TV +G S G++ESVK  SD  +PV+GKVV VNE L   P L+NS+PY  GWI+K+E     ++K L+ +D Y K
Sbjct:    5 KDLLYTEEHEWVKADDGSYVIGITDFAQDQLGDIVFVELPEVGDTVTKGDSIGSIESVKTVSDFYAPVTGKVVAVNETLEDEPELINSNPYDTGWILKLEEVEEADVKALLSSDDYEK 122          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_LISMH (Glycine cleavage system H protein OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=gcvH PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.402e-33
Identity = 67/118 (56.78%), Postives = 83/118 (70.34%), Query Frame = 3
Query:    6 KDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTK 359
            KDL Y + HEWVK D  S  IGITD AQD LGD+V+VELPEVG TV +G S G++ESVK  SD  +PV+GKVV VNE L   P L+NS+PY  GWI+K+E     ++K L+ +D Y K
Sbjct:    5 KDLLYTEEHEWVKADDGSYVIGITDFAQDQLGDIVFVELPEVGDTVTKGDSIGSIESVKTVSDFYAPVTGKVVAVNETLEDEPELINSNPYDTGWILKLEEVEEADVKALLSSDDYEK 122          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_STRM5 (Glycine cleavage system H protein OS=Stenotrophomonas maltophilia (strain R551-3) GN=gcvH PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.831e-33
Identity = 69/124 (55.65%), Postives = 84/124 (67.74%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNS-ATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEED 377
            DLK+  SHEW +V+GN   T+GI+DHAQ  LGD+VYVELPEVG T K       VESVKA SDV SPVSG +VEVN  LS  P  +N   Y DGW+  VE+ +A EL +L+D D Y +  E+ED
Sbjct:    7 DLKFLKSHEWARVEGNGRVTVGISDHAQGLLGDLVYVELPEVGATAKANEQIAVVESVKAASDVYSPVSGTIVEVNSALSDKPETINEDAYGDGWMYVVELSNAEELNELLDPDAYAEALEDED 130          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_SCHPO (Putative glycine cleavage system H protein, mitochondrial OS=Schizosaccharomyces pombe GN=SPBP19A11.01 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.831e-33
Identity = 66/123 (53.66%), Postives = 87/123 (70.73%), Query Frame = 3
Query:   18 YADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEEDSKH 386
            +   HEWVKVDG+  T+GIT +A + LG+VV+VELPE   TV  G   GAVESVK+ SDV SPVSG V  +NE L  SP  V+SSP ++GWI K+++ S  ELK L++ + Y +FC+EED+ H
Sbjct:   47 FTKEHEWVKVDGDVGTVGITSYAANALGEVVFVELPEPETTVSVGDGIGAVESVKSASDVYSPVSGTVTSINESLGDSPDKVSSSPEEEGWICKIKLSSPDELKSLLNDESYAQFCKEEDASH 169          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_LISMF (Glycine cleavage system H protein OS=Listeria monocytogenes serotype 4b (strain F2365) GN=gcvH PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.831e-33
Identity = 67/118 (56.78%), Postives = 83/118 (70.34%), Query Frame = 3
Query:    6 KDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTK 359
            KDL Y + HEWVK D  S  IGITD AQD LGD+V+VELPEVG TV +G S G++ESVK  SD  +PV+GKVV VNE L   P L+NS+PY  GWI+K+E     ++K L+ +D Y K
Sbjct:    5 KDLLYTEEHEWVKADEGSYVIGITDFAQDQLGDIVFVELPEVGDTVAKGDSIGSIESVKTVSDFYAPVTGKVVAVNETLEDEPELINSNPYDTGWILKLEEVEEADVKALLSSDDYEK 122          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_LISMC (Glycine cleavage system H protein OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=gcvH PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.831e-33
Identity = 67/118 (56.78%), Postives = 83/118 (70.34%), Query Frame = 3
Query:    6 KDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTK 359
            KDL Y + HEWVK D  S  IGITD AQD LGD+V+VELPEVG TV +G S G++ESVK  SD  +PV+GKVV VNE L   P L+NS+PY  GWI+K+E     ++K L+ +D Y K
Sbjct:    5 KDLLYTEEHEWVKADEGSYVIGITDFAQDQLGDIVFVELPEVGDTVAKGDSIGSIESVKTVSDFYAPVTGKVVAVNETLEDEPELINSNPYDTGWILKLEEVEEADVKALLSSDDYEK 122          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_CELJU (Glycine cleavage system H protein OS=Cellvibrio japonicus (strain Ueda107) GN=gcvH PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.831e-33
Identity = 71/125 (56.80%), Postives = 86/125 (68.80%), Query Frame = 3
Query:    6 KDLKYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEED 377
            K+LKY  SHEW +V+ + + TIGITDHAQD LGDVVYVE PEVG  V  G   G VESVKA SD+ S VSGKVV VNE L  +P  VNSSPY +GW  +V+ D   EL + + AD+Y +  E E+
Sbjct:    6 KELKYLSSHEWARVEEDGTVTIGITDHAQDALGDVVYVETPEVGSRVSLGEEAGVVESVKAASDIYSLVSGKVVAVNELLQDAPETVNSSPYDEGWFFRVQPDDVSELDEALSADEYRELLESEE 130          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_BACLD (Glycine cleavage system H protein OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=gcvH PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.831e-33
Identity = 65/123 (52.85%), Postives = 87/123 (70.73%), Query Frame = 3
Query:    6 KDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            K+L+Y++ HEWVK +G+   IGITD AQ  LGD+V+VELPEVG  +K    FG+VESVK  S++ +P++GKVVEVNE+L  SP  VN SPY+  W+I VE   A E++ LM A QY    +E+
Sbjct:    5 KELRYSEEHEWVKTEGDKVRIGITDFAQSELGDIVFVELPEVGDEIKADEPFGSVESVKTVSELYAPINGKVVEVNEDLEDSPEFVNESPYEKAWMIVVEPSDASEIENLMTAGQYEDMIKED 127          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_ANASK (Glycine cleavage system H protein OS=Anaeromyxobacter sp. (strain K) GN=gcvH PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.831e-33
Identity = 64/124 (51.61%), Postives = 88/124 (70.97%), Query Frame = 3
Query:    6 KDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEED 377
            +DL+Y   HEW +  G++  +GITD AQ  LGDVVYVELP+VG  VK+G SFG VES KA S++ +P+SGKV+EVN+ LS +P  +N  PY++GW+I +E     +L+ LMDA  Y  F EE++
Sbjct:    5 EDLRYTREHEWARRKGSAIVVGITDFAQQQLGDVVYVELPDVGDPVKKGESFGVVESTKAVSELFAPISGKVIEVNDPLSDAPETINEDPYEEGWMITIEPSDPKDLEALMDAAAYKAFVEEQE 128          
The following BLAST results are available for this feature:
BLAST of CX291022 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 462
Match NameE-valueIdentityDescription
GCSH_STAA31.402e-3352.07Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_LISMO1.402e-3356.78Glycine cleavage system H protein OS=Listeria mono... [more]
GCSH_LISMH1.402e-3356.78Glycine cleavage system H protein OS=Listeria mono... [more]
GCSH_STRM51.831e-3355.65Glycine cleavage system H protein OS=Stenotrophomo... [more]
GCSH_SCHPO1.831e-3353.66Putative glycine cleavage system H protein, mitoch... [more]
GCSH_LISMF1.831e-3356.78Glycine cleavage system H protein OS=Listeria mono... [more]
GCSH_LISMC1.831e-3356.78Glycine cleavage system H protein OS=Listeria mono... [more]
GCSH_CELJU1.831e-3356.80Glycine cleavage system H protein OS=Cellvibrio ja... [more]
GCSH_BACLD1.831e-3352.85Glycine cleavage system H protein OS=Bacillus lich... [more]
GCSH_ANASK1.831e-3351.61Glycine cleavage system H protein OS=Anaeromyxobac... [more]

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Properties
Property NameValue
Genbank descriptionC03003A09SK OF2 Citrus clementina cDNA clone C03003A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291022 ID=CX291022; Name=CX291022; organism=Citrus clementina; type=EST; length=389bp
TTATAAAGGATCTAAAGTATGCTGACTCTCATGAATGGGTTAAGGTTGAT
GGTAACTCTGCAACCATTGGTATAACTGACCATGCTCAAGATCATTTAGG
CGATGTTGTGTATGTTGAATTACCAGAGGTAGGGGTTACAGTAAAGCAAG
GTGCCAGCTTTGGTGCAGTTGAAAGTGTCAAGGCTACTAGTGATGTTAAT
TCTCCTGTTTCTGGGAAAGTGGTTGAAGTTAATGAAGAGCTCAGCAGTTC
ACCTGCTTTGGTCAACTCAAGCCCATACAAGGATGGATGGATTATAAAAG
TGGAGATGGACAGTGCTGGTGAATTGAAGAAGTTGATGGATGCTGATCAA
TACACCAAGTTCTGTGAAGAAGAAGATTCAAAACACTGA
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