CX291022

Overview
NameCX291022
Unique NameCX291022
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length389
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_ANAD2 (Glycine cleavage system H protein OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=gcvH PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.831e-33
Identity = 64/124 (51.61%), Postives = 88/124 (70.97%), Query Frame = 3
Query:    6 KDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEED 377
            +DL+Y   HEW +  G++  +GITD AQ  LGDVVYVELP+VG  VK+G SFG VES KA S++ +P+SGKV+EVN+ LS +P  +N  PY++GW+I +E     +L+ LMDA  Y  F EE++
Sbjct:    5 EDLRYTREHEWARRKGSAIVVGITDFAQQQLGDVVYVELPDVGDPVKKGESFGVVESTKAVSELFAPISGKVIEVNDPLSDAPETINEDPYEEGWMITIEPSDPKDLEALMDAAAYKAFVEEQE 128          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_STACT (Glycine cleavage system H protein OS=Staphylococcus carnosus (strain TM300) GN=gcvH PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.392e-33
Identity = 63/122 (51.64%), Postives = 90/122 (73.77%), Query Frame = 3
Query:    6 KDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEE 371
            ++LKY+  HEWVKV+G++ TIGIT++AQ  LGD+V+VELPE    +++  SFG+VESVK  S++ +PVSG VVE+NEEL  SP  VN SPY+  W++KV+++   +L  L+ ADQY +   E
Sbjct:    5 EELKYSKEHEWVKVEGDTVTIGITEYAQGELGDIVFVELPETEDDIEESESFGSVESVKTVSELYAPVSGSVVEINEELEDSPEFVNESPYEKAWMVKVKLNDESQLDDLLSADQYKEMIGE 126          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_MARAV (Glycine cleavage system H protein OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=gcvH PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.329e-33
Identity = 65/124 (52.42%), Postives = 89/124 (71.77%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEED 377
            DLKY ++H+WV+VD + +AT+GITD AQ+ LGDVVY+ +PE+G TV  G   G  ESVK+ SDV SPV+G+V+E+NE+L   P +VN  PY DGW+ KV++   GEL+ LMDA  Y +    E+
Sbjct:    7 DLKYIETHQWVRVDADGTATVGITDFAQEQLGDVVYIGVPEMGATVNGGEEAGVAESVKSASDVFSPVTGEVIEINEKLEDEPEIVNEDPYGDGWMFKVKLADEGELEGLMDAAAYAEHVAAEE 130          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_PSEA6 (Glycine cleavage system H protein OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=gcvH PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 6.960e-33
Identity = 64/123 (52.03%), Postives = 89/123 (72.36%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSA-TIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            DL+YA +HEWV+ +G+   T+GI++HAQ+ LGD+V+VELP+VG TV  G      ESVKA SDV +P+ G++V VNE+L  SP LVNS PY DGW+ +++ D A E++ L+DA+ Y    EEE
Sbjct:    7 DLRYATTHEWVRPEGDGTFTVGISEHAQELLGDMVFVELPDVGATVSAGDDIAVAESVKAASDVYAPIGGEIVGVNEDLEDSPELVNSDPYGDGWLFRIKADDADEVEGLLDAEGYENSIEEE 129          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_STRMK (Glycine cleavage system H protein OS=Stenotrophomonas maltophilia (strain K279a) GN=gcvH PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.089e-33
Identity = 67/124 (54.03%), Postives = 84/124 (67.74%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNS-ATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEED 377
            DLK+  SHEW +V+GN   T+GI+DHAQ  LGD+VYVELPEVG   K G     VESVKA SDV SP+SGKVVEVN  LS  P  +N   Y +GW+  VE+ +A E+ +L+D D Y +  E +D
Sbjct:    7 DLKFLKSHEWARVEGNGRVTVGISDHAQGLLGDLVYVELPEVGADAKAGEQIAVVESVKAASDVYSPISGKVVEVNSALSDKPETINEDAYGEGWMFVVELTNAEEVNELLDPDAYAEALENDD 130          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_YERE8 (Glycine cleavage system H protein OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=gcvH PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.187e-32
Identity = 64/122 (52.46%), Postives = 86/122 (70.49%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSA-TIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEE 371
            DLKYA SHEWV+ DG+   ++GIT+HAQ+ LGD+V+V+LPEVG  V  G+     ESVKA SD+ +P+SG+++ VN EL SSP LVNS+PY DGW+  ++     EL  L+DA+ Y    EE
Sbjct:    7 DLKYASSHEWVRADGDGVYSVGITEHAQELLGDMVFVDLPEVGSEVSAGSDCAVAESVKAASDIYAPISGEIIAVNAELESSPELVNSAPYTDGWLFSIKASDESELDSLLDAEAYLATIEE 128          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_SACD2 (Glycine cleavage system H protein OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=gcvH PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.187e-32
Identity = 68/124 (54.84%), Postives = 86/124 (69.35%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEED 377
            +LKY +SHEW +V+ + + TIGITDHAQ+ LGDVV+VE+PEVG  V  G   G VESVKA SD+ SPVSG+V+ VNE L  +P  VNSSPY DGW  KV+ D   EL+K +  + Y    E +D
Sbjct:    7 ELKYLESHEWARVEEDGTVTIGITDHAQEALGDVVFVEVPEVGSQVSIGEEAGVVESVKAASDIYSPVSGEVIAVNEALEDAPETVNSSPYDDGWFFKVKPDDLDELEKALSMEDYKAAIESDD 130          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_RUBXD (Glycine cleavage system H protein OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=gcvH PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.187e-32
Identity = 64/124 (51.61%), Postives = 89/124 (71.77%), Query Frame = 3
Query:    6 KDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEED 377
            +DL Y  +HEW +++G++AT+GITDHAQ+ LGDVV+VELPEVG +V+ G  FG +ESVKA SD+ SPVSG+V EVN  L  SP  VN  PY +GW+++V +    E   L+  ++Y +  EEE+
Sbjct:    6 QDLVYTRTHEWARIEGDAATVGITDHAQEELGDVVFVELPEVGSSVQAGEPFGTIESVKAVSDLYSPVSGEVTEVNTSLEESPEKVNEDPYGEGWLLRVRL---SEEPDLLSPEEYARRLEEEE 126          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_PARL1 (Glycine cleavage system H protein OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=gcvH PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.187e-32
Identity = 65/122 (53.28%), Postives = 87/122 (71.31%), Query Frame = 3
Query:    3 IKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCE 368
            + D+++ D HEWV+VDG+ ATIGITD+AQ+ LGDVV+VELPEVG  +  G     VESVKA S+V SPVSG+V++VN ++  +PA VN +   DGW IK+ +    EL KLMD   Y++F E
Sbjct:    1 MSDIRFTDQHEWVRVDGDIATIGITDYAQEQLGDVVFVELPEVGKDIAAGDEAAVVESVKAASEVYSPVSGEVIDVNSDIEKTPAGVNENAMGDGWFIKLRLADPSELDKLMDEAAYSEFVE 122          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_ALTMD (Glycine cleavage system H protein OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=gcvH PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.187e-32
Identity = 66/123 (53.66%), Postives = 89/123 (72.36%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSA-TIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            DL+YA +HEWV+ +G+   T+GI++HAQ  LGD+V+VELP+VG  V  G      ESVKA SDV +P+SG+VVEVNE+L  SP LVNS PY DGW+ K++ D A E++ L+DA+ Y    +EE
Sbjct:    7 DLRYAATHEWVRPEGDGVFTVGISEHAQGLLGDMVFVELPDVGDAVSTGDDICVAESVKAASDVYAPISGEVVEVNEDLEDSPELVNSDPYGDGWLFKIKADDAAEVEGLLDAEGYENSIDEE 129          
The following BLAST results are available for this feature:
BLAST of CX291022 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 462
Match NameE-valueIdentityDescription
GCSH_ANAD21.831e-3351.61Glycine cleavage system H protein OS=Anaeromyxobac... [more]
GCSH_STACT2.392e-3351.64Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_MARAV5.329e-3352.42Glycine cleavage system H protein OS=Marinobacter ... [more]
GCSH_PSEA66.960e-3352.03Glycine cleavage system H protein OS=Pseudoalterom... [more]
GCSH_STRMK9.089e-3354.03Glycine cleavage system H protein OS=Stenotrophomo... [more]
GCSH_YERE81.187e-3252.46Glycine cleavage system H protein OS=Yersinia ente... [more]
GCSH_SACD21.187e-3254.84Glycine cleavage system H protein OS=Saccharophagu... [more]
GCSH_RUBXD1.187e-3251.61Glycine cleavage system H protein OS=Rubrobacter x... [more]
GCSH_PARL11.187e-3253.28Glycine cleavage system H protein OS=Parvibaculum ... [more]
GCSH_ALTMD1.187e-3253.66Glycine cleavage system H protein OS=Alteromonas m... [more]

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Properties
Property NameValue
Genbank descriptionC03003A09SK OF2 Citrus clementina cDNA clone C03003A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291022 ID=CX291022; Name=CX291022; organism=Citrus clementina; type=EST; length=389bp
TTATAAAGGATCTAAAGTATGCTGACTCTCATGAATGGGTTAAGGTTGAT
GGTAACTCTGCAACCATTGGTATAACTGACCATGCTCAAGATCATTTAGG
CGATGTTGTGTATGTTGAATTACCAGAGGTAGGGGTTACAGTAAAGCAAG
GTGCCAGCTTTGGTGCAGTTGAAAGTGTCAAGGCTACTAGTGATGTTAAT
TCTCCTGTTTCTGGGAAAGTGGTTGAAGTTAATGAAGAGCTCAGCAGTTC
ACCTGCTTTGGTCAACTCAAGCCCATACAAGGATGGATGGATTATAAAAG
TGGAGATGGACAGTGCTGGTGAATTGAAGAAGTTGATGGATGCTGATCAA
TACACCAAGTTCTGTGAAGAAGAAGATTCAAAACACTGA
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