CX291022

Overview
NameCX291022
Unique NameCX291022
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length389
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_ERWCT (Glycine cleavage system H protein OS=Erwinia carotovora subsp. atroseptica GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.892e-32
Identity = 62/124 (50.00%), Postives = 91/124 (73.39%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSA-TIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEED 377
            +LKYA SHEWV  +G+   ++GIT+HAQ+ LGD+V+++LPEVG  V  G      ESVKA SD+ +P+SG+VVEVNE+L +SP LVNS+PY DGW+ ++++    +L +L+DA+ Y    EE++
Sbjct:    7 ELKYATSHEWVLHEGDGIYSVGITEHAQELLGDMVFIDLPEVGTVVAAGDDCAVAESVKAASDIYAPISGEVVEVNEDLENSPELVNSAPYTDGWLFRIKISDESDLDELLDAEGYQASLEEDE 130          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_COPPD (Glycine cleavage system H protein OS=Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.695e-32
Identity = 64/124 (51.61%), Postives = 87/124 (70.16%), Query Frame = 3
Query:    3 IKDLKYADSHEWVKV-DGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEE 371
            ++ LKY+  HEWVKV + N  ++GITD AQD LGD+V+V LP VG  +K G +  ++ESVK+ SDV SPVSGKVVEVNE+L +SP ++N  PY +GWI  +E+     L  LM A++Y +F  E
Sbjct:    4 LEGLKYSKEHEWVKVLEDNKVSVGITDFAQDELGDIVFVNLPAVGQEIKVGETLASLESVKSASDVYSPVSGKVVEVNEKLKNSPEIINDDPYGEGWIAVIELSDVSVLDTLMSAEEYKQFIGE 127          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_BACP2 (Glycine cleavage system H protein OS=Bacillus pumilus (strain SAFR-032) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.695e-32
Identity = 62/123 (50.41%), Postives = 85/123 (69.11%), Query Frame = 3
Query:    6 KDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            KDL+Y++ HEWVKV+G    IGIT  AQ  LGD+V+VELPEVG  +     FG+VESVK  S++ +P++G +VEVN+EL  SP  VN SPY+  W+I VE     E++ LM A+QY +  +E+
Sbjct:    5 KDLRYSEEHEWVKVEGEKVRIGITHFAQSELGDIVFVELPEVGDKITADEPFGSVESVKTVSELYAPINGTIVEVNDELDDSPEFVNDSPYEKAWMIVVEPADTSEIENLMTAEQYEEMTKED 127          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_YERPY (Glycine cleavage system H protein OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.005e-31
Identity = 64/122 (52.46%), Postives = 86/122 (70.49%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSA-TIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEE 371
            +LKYA SHEWV+ DG+   ++GIT+HAQ+ LGD+V+V+LPEVG  V  G+     ESVKA SD+ +P+SG++V VN EL +SP LVNS+PY DGW+  ++     EL  L+DAD Y    EE
Sbjct:    7 ELKYALSHEWVRADGDGVYSVGITEHAQELLGDMVFVDLPEVGSDVSAGSDCAVAESVKAASDIYAPISGEIVAVNTELENSPELVNSAPYTDGWLFSIKAADESELDNLLDADAYLAAIEE 128          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_YERPS (Glycine cleavage system H protein OS=Yersinia pseudotuberculosis GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.005e-31
Identity = 64/122 (52.46%), Postives = 86/122 (70.49%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSA-TIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEE 371
            +LKYA SHEWV+ DG+   ++GIT+HAQ+ LGD+V+V+LPEVG  V  G+     ESVKA SD+ +P+SG++V VN EL +SP LVNS+PY DGW+  ++     EL  L+DAD Y    EE
Sbjct:    7 ELKYALSHEWVRADGDGVYSVGITEHAQELLGDMVFVDLPEVGSDVSAGSDCAVAESVKAASDIYAPISGEIVAVNTELENSPELVNSAPYTDGWLFSIKAADESELDNLLDADAYLAAIEE 128          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_YERPP (Glycine cleavage system H protein OS=Yersinia pestis (strain Pestoides F) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.005e-31
Identity = 64/122 (52.46%), Postives = 86/122 (70.49%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSA-TIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEE 371
            +LKYA SHEWV+ DG+   ++GIT+HAQ+ LGD+V+V+LPEVG  V  G+     ESVKA SD+ +P+SG++V VN EL +SP LVNS+PY DGW+  ++     EL  L+DAD Y    EE
Sbjct:    7 ELKYALSHEWVRADGDGVYSVGITEHAQELLGDMVFVDLPEVGSDVSAGSDCAVAESVKAASDIYAPISGEIVAVNTELENSPELVNSAPYTDGWLFSIKAADESELDNLLDADAYLAAIEE 128          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_YERPN (Glycine cleavage system H protein OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.005e-31
Identity = 64/122 (52.46%), Postives = 86/122 (70.49%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSA-TIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEE 371
            +LKYA SHEWV+ DG+   ++GIT+HAQ+ LGD+V+V+LPEVG  V  G+     ESVKA SD+ +P+SG++V VN EL +SP LVNS+PY DGW+  ++     EL  L+DAD Y    EE
Sbjct:    7 ELKYALSHEWVRADGDGVYSVGITEHAQELLGDMVFVDLPEVGSDVSAGSDCAVAESVKAASDIYAPISGEIVAVNTELENSPELVNSAPYTDGWLFSIKAADESELDNLLDADAYLAAIEE 128          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_YERPG (Glycine cleavage system H protein OS=Yersinia pestis bv. Antiqua (strain Angola) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.005e-31
Identity = 64/122 (52.46%), Postives = 86/122 (70.49%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSA-TIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEE 371
            +LKYA SHEWV+ DG+   ++GIT+HAQ+ LGD+V+V+LPEVG  V  G+     ESVKA SD+ +P+SG++V VN EL +SP LVNS+PY DGW+  ++     EL  L+DAD Y    EE
Sbjct:    7 ELKYALSHEWVRADGDGVYSVGITEHAQELLGDMVFVDLPEVGSDVSAGSDCAVAESVKAASDIYAPISGEIVAVNTELENSPELVNSAPYTDGWLFSIKAADESELDNLLDADAYLAAIEE 128          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_YERPE (Glycine cleavage system H protein OS=Yersinia pestis GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.005e-31
Identity = 64/122 (52.46%), Postives = 86/122 (70.49%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSA-TIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEE 371
            +LKYA SHEWV+ DG+   ++GIT+HAQ+ LGD+V+V+LPEVG  V  G+     ESVKA SD+ +P+SG++V VN EL +SP LVNS+PY DGW+  ++     EL  L+DAD Y    EE
Sbjct:    7 ELKYALSHEWVRADGDGVYSVGITEHAQELLGDMVFVDLPEVGSDVSAGSDCAVAESVKAASDIYAPISGEIVAVNTELENSPELVNSAPYTDGWLFSIKAADESELDNLLDADAYLAAIEE 128          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_YERPB (Glycine cleavage system H protein OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.005e-31
Identity = 64/122 (52.46%), Postives = 86/122 (70.49%), Query Frame = 3
Query:    9 DLKYADSHEWVKVDGNSA-TIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEE 371
            +LKYA SHEWV+ DG+   ++GIT+HAQ+ LGD+V+V+LPEVG  V  G+     ESVKA SD+ +P+SG++V VN EL +SP LVNS+PY DGW+  ++     EL  L+DAD Y    EE
Sbjct:    7 ELKYALSHEWVRADGDGVYSVGITEHAQELLGDMVFVDLPEVGSDVSAGSDCAVAESVKAASDIYAPISGEIVAVNTELENSPELVNSAPYTDGWLFSIKAADESELDNLLDADAYLAAIEE 128          
The following BLAST results are available for this feature:
BLAST of CX291022 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 462
Match NameE-valueIdentityDescription
GCSH_ERWCT5.892e-3250.00Glycine cleavage system H protein OS=Erwinia carot... [more]
GCSH_COPPD7.695e-3251.61Glycine cleavage system H protein OS=Coprothermoba... [more]
GCSH_BACP27.695e-3250.41Glycine cleavage system H protein OS=Bacillus pumi... [more]
GCSH_YERPY1.005e-3152.46Glycine cleavage system H protein OS=Yersinia pseu... [more]
GCSH_YERPS1.005e-3152.46Glycine cleavage system H protein OS=Yersinia pseu... [more]
GCSH_YERPP1.005e-3152.46Glycine cleavage system H protein OS=Yersinia pest... [more]
GCSH_YERPN1.005e-3152.46Glycine cleavage system H protein OS=Yersinia pest... [more]
GCSH_YERPG1.005e-3152.46Glycine cleavage system H protein OS=Yersinia pest... [more]
GCSH_YERPE1.005e-3152.46Glycine cleavage system H protein OS=Yersinia pest... [more]
GCSH_YERPB1.005e-3152.46Glycine cleavage system H protein OS=Yersinia pseu... [more]

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Properties
Property NameValue
Genbank descriptionC03003A09SK OF2 Citrus clementina cDNA clone C03003A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291022 ID=CX291022; Name=CX291022; organism=Citrus clementina; type=EST; length=389bp
TTATAAAGGATCTAAAGTATGCTGACTCTCATGAATGGGTTAAGGTTGAT
GGTAACTCTGCAACCATTGGTATAACTGACCATGCTCAAGATCATTTAGG
CGATGTTGTGTATGTTGAATTACCAGAGGTAGGGGTTACAGTAAAGCAAG
GTGCCAGCTTTGGTGCAGTTGAAAGTGTCAAGGCTACTAGTGATGTTAAT
TCTCCTGTTTCTGGGAAAGTGGTTGAAGTTAATGAAGAGCTCAGCAGTTC
ACCTGCTTTGGTCAACTCAAGCCCATACAAGGATGGATGGATTATAAAAG
TGGAGATGGACAGTGCTGGTGAATTGAAGAAGTTGATGGATGCTGATCAA
TACACCAAGTTCTGTGAAGAAGAAGATTCAAAACACTGA
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