CX291023

Overview
NameCX291023
Unique NameCX291023
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length606
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: NOLC_RHIFR (Protein nolC OS=Rhizobium fredii GN=nolC PE=4 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.258e-14
Identity = 36/72 (50.00%), Postives = 48/72 (66.67%), Query Frame = 1
Query:  247 LRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAGFEA 462
            ++RD YE LGV+RN  ++E+KSA+RK+A++YHPD+N  D  A   FKE   +Y  L DP KR  YD  G  A
Sbjct:    1 MKRDLYETLGVARNADEKELKSAFRKLAMQYHPDRNPGDQEAEKSFKEINQAYETLKDPQKRAAYDRYGHAA 72          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_WOLTR (Chaperone protein dnaJ OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.258e-14
Identity = 36/70 (51.43%), Postives = 49/70 (70.00%), Query Frame = 1
Query:  250 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAGFE 459
            ++D Y++LGV RN +  EIK AY+K+ALKYHPD+N  +  A + FKE T +Y +LSD +KR  YD  G E
Sbjct:    3 KKDYYKLLGVDRNASTDEIKKAYKKLALKYHPDRNPGNKEAEEKFKEITAAYEVLSDSEKRAGYDRYGHE 72          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_VIBSL (Chaperone protein dnaJ OS=Vibrio splendidus (strain LGP32) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.258e-14
Identity = 36/71 (50.70%), Postives = 51/71 (71.83%), Query Frame = 1
Query:  250 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAGFEA 462
            +RD YEVLGVSR+ ++++IK AY+++A+K+HPD+N  D  AAD FKE   +Y IL+D  K+  YD  G  A
Sbjct:    3 KRDFYEVLGVSRDASERDIKKAYKRLAMKFHPDRNQGDDSAADKFKEVKVAYEILTDAQKKAAYDQYGHAA 73          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_TREDE (Chaperone protein dnaJ OS=Treponema denticola GN=dnaJ PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.258e-14
Identity = 38/72 (52.78%), Postives = 47/72 (65.28%), Query Frame = 1
Query:  250 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAGFEAV 465
            +RD YEVLGV +  ++ +IK AYRK+A+KYHPDKN  D  A + FKE T +Y IL D  KR  YD  G   V
Sbjct:    5 KRDYYEVLGVDKKASNDDIKKAYRKLAIKYHPDKNQGDKAAEEKFKEATEAYEILIDEKKRSMYDQFGHAGV 76          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_TERTT (Chaperone protein dnaJ OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.258e-14
Identity = 36/72 (50.00%), Postives = 52/72 (72.22%), Query Frame = 1
Query:  250 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAGFEAV 465
            +RD YEVLGV+R+ ++Q++K AYRK+A+K+HPD+N +D  A + FKE + +Y +LSD  KR  YD  G   V
Sbjct:    3 KRDYYEVLGVARDVSEQDLKKAYRKVAMKFHPDRNPDDASAEEKFKEASEAYEVLSDKQKRAAYDQFGHAGV 74          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_RHISN (Chaperone protein dnaJ OS=Rhizobium sp. (strain NGR234) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.258e-14
Identity = 36/72 (50.00%), Postives = 47/72 (65.28%), Query Frame = 1
Query:  247 LRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAGFEA 462
            ++RD YE LGV +N  ++E+KSA+RK+A+KYHPD+N  D  A   FKE   +Y  L DP KR  YD  G  A
Sbjct:    1 MKRDLYETLGVKKNADEKELKSAFRKLAMKYHPDRNPGDQEAEKSFKEINEAYETLKDPQKRAAYDRYGHAA 72          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_MYCGA (Chaperone protein dnaJ OS=Mycoplasma gallisepticum GN=dnaJ PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.258e-14
Identity = 38/72 (52.78%), Postives = 52/72 (72.22%), Query Frame = 1
Query:  250 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAGFEAV 465
            +RD YE+L VSR+ T Q+IK A+RK+A+KYHPD+N  D  A + FKE   +Y +LSD +KR+ YDT G E +
Sbjct:    4 KRDYYEILEVSRSATQQDIKKAFRKLAMKYHPDRN-KDSDAEEKFKEVNEAYEVLSDEEKRKLYDTYGHEGL 74          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_MARAV (Chaperone protein dnaJ OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.258e-14
Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = 1
Query:  250 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAGFEAV 465
            +RD YEVLG+SR+  ++EIK AYRK+A+KYHPD+N +D  A   FKE + +Y IL+D  KR  YD  G   V
Sbjct:    3 KRDYYEVLGISRDADEKEIKRAYRKLAMKYHPDRNPDDKDAETKFKEASEAYEILADSSKRAAYDQFGHAGV 74          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_BURPS (Chaperone protein dnaJ OS=Burkholderia pseudomallei GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.258e-14
Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = 1
Query:  250 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAGFEAV 465
            +RD YEVLGV++N +D EIK AYRK+A+KYHPD+N +   A + FKE   +Y +LSD  KR  YD  G   V
Sbjct:    3 KRDYYEVLGVAKNASDDEIKKAYRKLAMKYHPDRNPDSKDAEEHFKEAKEAYEMLSDGQKRAAYDQYGHAGV 74          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_BURP6 (Chaperone protein dnaJ OS=Burkholderia pseudomallei (strain 668) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.258e-14
Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = 1
Query:  250 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAGFEAV 465
            +RD YEVLGV++N +D EIK AYRK+A+KYHPD+N +   A + FKE   +Y +LSD  KR  YD  G   V
Sbjct:    3 KRDYYEVLGVAKNASDDEIKKAYRKLAMKYHPDRNPDSKDAEEHFKEAKEAYEMLSDGQKRAAYDQYGHAGV 74          
The following BLAST results are available for this feature:
BLAST of CX291023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NOLC_RHIFR1.258e-1450.00Protein nolC OS=Rhizobium fredii GN=nolC PE=4 SV=1[more]
DNAJ_WOLTR1.258e-1451.43Chaperone protein dnaJ OS=Wolbachia sp. subsp. Bru... [more]
DNAJ_VIBSL1.258e-1450.70Chaperone protein dnaJ OS=Vibrio splendidus (strai... [more]
DNAJ_TREDE1.258e-1452.78Chaperone protein dnaJ OS=Treponema denticola GN=d... [more]
DNAJ_TERTT1.258e-1450.00Chaperone protein dnaJ OS=Teredinibacter turnerae ... [more]
DNAJ_RHISN1.258e-1450.00Chaperone protein dnaJ OS=Rhizobium sp. (strain NG... [more]
DNAJ_MYCGA1.258e-1452.78Chaperone protein dnaJ OS=Mycoplasma gallisepticum... [more]
DNAJ_MARAV1.258e-1452.78Chaperone protein dnaJ OS=Marinobacter aquaeolei (... [more]
DNAJ_BURPS1.258e-1452.78Chaperone protein dnaJ OS=Burkholderia pseudomalle... [more]
DNAJ_BURP61.258e-1452.78Chaperone protein dnaJ OS=Burkholderia pseudomalle... [more]

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Properties
Property NameValue
Genbank descriptionC03003A10SK OF2 Citrus clementina cDNA clone C03003A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291023 ID=CX291023; Name=CX291023; organism=Citrus clementina; type=EST; length=606bp
ATCAAGTCTAGTCTAGGGTTTCCTTATTCTTTTCTCACCAGTCTGTTATT
TTTCCGAGAAAAGATTAAGAAAAAAAAATGCGAGAGAATTTGGGAGGAAC
AATTGTTTGTTTTTCGTTTTCGTCTAAAAAAAATTTTCTGTCTCGGTAGT
GGTTTCTAGGGCCTTTGAGTGGAGTTTTTTCACGTTCTTTTATTGAAAAT
GCCGGCTCAACGATCCAAGTCCGAGAGAAGCGATGCGGGAAAGCAGCTCC
GGCGGGACCCCTACGAGGTTCTCGGCGTCTCCAGGAACTGTACGGATCAA
GAAATCAAGAGCGCCTACAGGAAAATGGCTCTAAAGTACCATCCTGATAA
GAATGCAAATGACCCTGTAGCAGCTGATATTTTTAAGGAGTTTACATTTT
CCTATAATATCTTGTCAGATCCTGACAAAAGACGACAGTATGACACCGCT
GGTTTTGAGGCTGTTGAATCAGAAAGTCAAGAATTGGAGCTAGATCTTTC
TAGTTTGGGAGCTGTGAACACCATGTTTGCTGCACTTTTTAGTAAACTTG
GTGTGCCAATCAAGACCACTGTATCGGCTACTGTCTTGGAGGAGGCACTT
AATGGC
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