CX291023

Overview
NameCX291023
Unique NameCX291023
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length606
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12075 contig Ccv1_Contig12075:55..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_RALSO (Chaperone protein dnaJ OS=Ralstonia solanacearum GN=dnaJ PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.322e-15
Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = 1
Query:  250 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAGFEAV 465
            +RD YEVLGV +N +D EIK AYRK+A+KYHPD+N +   A + FKE   +Y +LSD DK+  YD  G   V
Sbjct:    3 KRDYYEVLGVGKNASDDEIKKAYRKLAMKYHPDRNPDSKEAEEKFKEAKEAYEMLSDADKKAAYDQYGHAGV 74          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_RALPJ (Chaperone protein dnaJ OS=Ralstonia pickettii (strain 12J) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.322e-15
Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = 1
Query:  250 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAGFEAV 465
            +RD YEVLGV +N +D EIK AYRK+A+KYHPD+N +   A D FKE   +Y +LSD +K+  YD  G   V
Sbjct:    3 KRDYYEVLGVGKNASDDEIKKAYRKLAMKYHPDRNPDSKEAEDKFKEAKEAYEMLSDAEKKAAYDQYGHAGV 74          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_LEPIN (Chaperone protein dnaJ OS=Leptospira interrogans GN=dnaJ PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.322e-15
Identity = 37/67 (55.22%), Postives = 49/67 (73.13%), Query Frame = 1
Query:  253 RDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAG 453
            R  Y++LGVS++  D+EIKSAYRK+A+KYHPDKN  +  + + FKE T +Y IL DP KR+ YD  G
Sbjct:    4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFG 70          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_LEPIC (Chaperone protein dnaJ OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=dnaJ PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.322e-15
Identity = 37/67 (55.22%), Postives = 49/67 (73.13%), Query Frame = 1
Query:  253 RDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAG 453
            R  Y++LGVS++  D+EIKSAYRK+A+KYHPDKN  +  + + FKE T +Y IL DP KR+ YD  G
Sbjct:    4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFG 70          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_LEPBL (Chaperone protein dnaJ OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.322e-15
Identity = 37/67 (55.22%), Postives = 49/67 (73.13%), Query Frame = 1
Query:  253 RDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAG 453
            R  Y++LGVS++  D+EIKSAYRK+A+KYHPDKN  +  + + FKE T +Y IL DP KR+ YD  G
Sbjct:    4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFG 70          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_LEPBJ (Chaperone protein dnaJ OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.322e-15
Identity = 37/67 (55.22%), Postives = 49/67 (73.13%), Query Frame = 1
Query:  253 RDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAG 453
            R  Y++LGVS++  D+EIKSAYRK+A+KYHPDKN  +  + + FKE T +Y IL DP KR+ YD  G
Sbjct:    4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFG 70          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_CLOTH (Chaperone protein dnaJ OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.322e-15
Identity = 38/71 (53.52%), Postives = 46/71 (64.79%), Query Frame = 1
Query:  250 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAGFEA 462
            +RD YE+LGV R  +D EIK AYRK+A +YHPD N  D  A   FKE   +Y +LSDP KR +YD  G  A
Sbjct:    4 KRDYYEILGVDRGASDAEIKKAYRKLAKQYHPDMNPGDKAAEAKFKEINEAYEVLSDPQKRARYDQFGHSA 74          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_CHLPD (Chaperone protein dnaJ OS=Chlorobium phaeobacteroides (strain DSM 266) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.322e-15
Identity = 38/73 (52.05%), Postives = 52/73 (71.23%), Query Frame = 1
Query:  247 LRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAGFEAV 465
            +++D YEVLG+SR+ T  EIK AYRK+A++YHPDKN ++  A + FKE   +Y  LS+ DKRR+YD  G   V
Sbjct:    1 MKKDYYEVLGLSRSATKDEIKKAYRKLAMQYHPDKNPDNKDAEEHFKEVNEAYEALSNDDKRRRYDQFGHAGV 73          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_STRM5 (Chaperone protein dnaJ OS=Stenotrophomonas maltophilia (strain R551-3) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.645e-15
Identity = 37/71 (52.11%), Postives = 49/71 (69.01%), Query Frame = 1
Query:  250 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAGFEA 462
            +RD YEVLGV+R   D+E+K AYR+ A+K+HPD+N  D  A   FKE   +Y +LSD +KRR YD+ G  A
Sbjct:    3 KRDYYEVLGVARTANDEELKKAYRRCAMKFHPDRNPGDAAAEASFKECKEAYEVLSDGNKRRMYDSHGHAA 73          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_HALHL (Chaperone protein dnaJ OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.645e-15
Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = 1
Query:  250 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAGFEAV 465
            +RD YEVLGV++N +D EIK AYR+MA K+HPD+N  D  +A+ FKE   +Y +LSD  KR  YD  G   V
Sbjct:    3 KRDYYEVLGVNKNASDAEIKKAYRRMAQKFHPDRNPGDEESAERFKEVKEAYEVLSDAQKRAAYDQFGHAGV 74          
The following BLAST results are available for this feature:
BLAST of CX291023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_RALSO4.322e-1552.78Chaperone protein dnaJ OS=Ralstonia solanacearum G... [more]
DNAJ_RALPJ4.322e-1552.78Chaperone protein dnaJ OS=Ralstonia pickettii (str... [more]
DNAJ_LEPIN4.322e-1555.22Chaperone protein dnaJ OS=Leptospira interrogans G... [more]
DNAJ_LEPIC4.322e-1555.22Chaperone protein dnaJ OS=Leptospira interrogans s... [more]
DNAJ_LEPBL4.322e-1555.22Chaperone protein dnaJ OS=Leptospira borgpeterseni... [more]
DNAJ_LEPBJ4.322e-1555.22Chaperone protein dnaJ OS=Leptospira borgpeterseni... [more]
DNAJ_CLOTH4.322e-1553.52Chaperone protein dnaJ OS=Clostridium thermocellum... [more]
DNAJ_CHLPD4.322e-1552.05Chaperone protein dnaJ OS=Chlorobium phaeobacteroi... [more]
DNAJ_STRM55.645e-1552.11Chaperone protein dnaJ OS=Stenotrophomonas maltoph... [more]
DNAJ_HALHL5.645e-1552.78Chaperone protein dnaJ OS=Halorhodospira halophila... [more]

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Properties
Property NameValue
Genbank descriptionC03003A10SK OF2 Citrus clementina cDNA clone C03003A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291023 ID=CX291023; Name=CX291023; organism=Citrus clementina; type=EST; length=606bp
ATCAAGTCTAGTCTAGGGTTTCCTTATTCTTTTCTCACCAGTCTGTTATT
TTTCCGAGAAAAGATTAAGAAAAAAAAATGCGAGAGAATTTGGGAGGAAC
AATTGTTTGTTTTTCGTTTTCGTCTAAAAAAAATTTTCTGTCTCGGTAGT
GGTTTCTAGGGCCTTTGAGTGGAGTTTTTTCACGTTCTTTTATTGAAAAT
GCCGGCTCAACGATCCAAGTCCGAGAGAAGCGATGCGGGAAAGCAGCTCC
GGCGGGACCCCTACGAGGTTCTCGGCGTCTCCAGGAACTGTACGGATCAA
GAAATCAAGAGCGCCTACAGGAAAATGGCTCTAAAGTACCATCCTGATAA
GAATGCAAATGACCCTGTAGCAGCTGATATTTTTAAGGAGTTTACATTTT
CCTATAATATCTTGTCAGATCCTGACAAAAGACGACAGTATGACACCGCT
GGTTTTGAGGCTGTTGAATCAGAAAGTCAAGAATTGGAGCTAGATCTTTC
TAGTTTGGGAGCTGTGAACACCATGTTTGCTGCACTTTTTAGTAAACTTG
GTGTGCCAATCAAGACCACTGTATCGGCTACTGTCTTGGAGGAGGCACTT
AATGGC
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