CX291040

Overview
NameCX291040
Unique NameCX291040
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length575
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_PROM9 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9312) GN=ispH PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 6.220e-42
Identity = 82/141 (58.16%), Postives = 113/141 (80.14%), Query Frame = -3
Query:  154 LKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIG-PGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKV 573
            LK ETEEIGK+ EKTM++KFG EN+N HF++FNTICDAT+ERQDAM+ +V+E +D+++V+GG+NSSNT+HLQEIA  + I S+ ID+ +RI    N I +K +  +L  K N+LP+G I +GITSGASTPDK V +V++K+
Sbjct:  253 LKSETEEIGKVFEKTMLKKFGPENLNSHFLAFNTICDATEERQDAMFSLVDEDLDILVVIGGFNSSNTTHLQEIAITKNITSFHIDTPERISVEENSILHKPLGLDLELKNNFLPSGNINVGITSGASTPDKVVADVIEKL 393          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_PROM1 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain NATL1A) GN=ispH PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 6.220e-42
Identity = 85/145 (58.62%), Postives = 116/145 (80.00%), Query Frame = -3
Query:  145 LKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIG-PGNKIAY-KLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEI 573
            LK ETEEIG+L EKTM+++FG   +NEHF++ NTICDAT+ERQ AM+ +V+E +DL++V+GG+NSSNT+HLQEIA  RGI S+ ID+ +RIG   N I +  L  GEL+ +EN+L NG I++GITSGASTPD+ VE+V+ K+ +I
Sbjct:  253 LKSETEEIGRLFEKTMLQRFGPAQLNEHFLAINTICDATEERQGAMFSLVDEPLDLMVVIGGFNSSNTTHLQEIAISRGIRSFHIDTPERIGEETNTITHMPLEGGELLTEENFLQNGNISVGITSGASTPDRVVEDVIHKLMKI 397          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_SYNS9 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain CC9902) GN=ispH PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 6.877e-41
Identity = 80/144 (55.56%), Postives = 113/144 (78.47%), Query Frame = -3
Query:  145 LKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIG-PGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEI 573
            LK ETEEIG++ E+TM+ K+G  ++NEHF+++NTICDATQERQDAM+ +V+E +DL++V+GG+NSSNT+HLQEIA  RGI S+ ID+  RI    N I +K +  +L   + +LP G +T+GITSGASTPD+AVE V++K+  +
Sbjct:  253 LKSETEEIGRMFERTMLSKYGPADLNEHFLAYNTICDATQERQDAMFSLVDEPLDLLVVIGGFNSSNTTHLQEIAVSRGIRSFHIDTPDRIDETTNSIEHKPLSEDLKRDQVFLPAGPVTVGITSGASTPDRAVEAVIEKLMRL 396          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_BORPE (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Bordetella pertussis GN=ispH PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.359e-14
Identity = 45/109 (41.28%), Postives = 67/109 (61.47%), Query Frame = -3
Query:  145 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEI 471
            IC ATQ RQDA+ K++  + DL+LVVG  NSSN++ L+E+AE +G+ +Y ID    I P                  WL  G+ +IGIT+GAS P+  V++V+++V E+
Sbjct:  202 ICYATQNRQDAV-KLLAPECDLVLVVGSTNSSNSNRLREVAERKGVAAYLIDGAHAIDPA-----------------WL-QGRRSIGITAGASAPEVLVQQVVERVREL 291          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_BORPA (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Bordetella parapertussis GN=ispH PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.359e-14
Identity = 45/109 (41.28%), Postives = 67/109 (61.47%), Query Frame = -3
Query:  145 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEI 471
            IC ATQ RQDA+ K++  + DL+LVVG  NSSN++ L+E+AE +G+ +Y ID    I P                  WL  G+ +IGIT+GAS P+  V++V+++V E+
Sbjct:  203 ICYATQNRQDAV-KLLAPECDLVLVVGSTNSSNSNRLREVAERKGVAAYLIDGAHAIDPA-----------------WL-QGRRSIGITAGASAPEVLVQQVVERVREL 292          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_BORBR (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Bordetella bronchiseptica GN=ispH PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.359e-14
Identity = 45/109 (41.28%), Postives = 67/109 (61.47%), Query Frame = -3
Query:  145 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEI 471
            IC ATQ RQDA+ K++  + DL+LVVG  NSSN++ L+E+AE +G+ +Y ID    I P                  WL  G+ +IGIT+GAS P+  V++V+++V E+
Sbjct:  203 ICYATQNRQDAV-KLLAPECDLVLVVGSTNSSNSNRLREVAERKGVAAYLIDGAHAIDPA-----------------WL-QGRRSIGITAGASAPEVLVQQVVERVREL 292          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_THETN (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Thermoanaerobacter tengcongensis GN=ispH PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.596e-13
Identity = 44/121 (36.36%), Postives = 73/121 (60.33%), Query Frame = -3
Query:  133 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKREE 495
            +  + FNTIC+ATQ+RQ+A    + +KVD++ V+GG +SSNT  L++I E     +Y I+        ++I ++++ G  +            IGIT+GASTPD  +EEV++K+  +K E+
Sbjct:  184 KELVYFNTICNATQKRQEAA-DALSKKVDVMFVIGGKHSSNTQKLRKICEKNCKNTYHIER------ADEITFEMLKGHDI------------IGITAGASTPDYVIEEVIEKIKSLKGED 285          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_PSYIN (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Psychromonas ingrahamii (strain 37) GN=ispH PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.557e-13
Identity = 46/106 (43.40%), Postives = 64/106 (60.38%), Query Frame = -3
Query:  154 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKV 471
            IC ATQ RQDA+ K + E+ DL+LVVG  NSSN++ LQE A   G+ +Y IDSEK I                 K  WL N ++ +G+T+GAS P+  V+EV+ ++
Sbjct:  196 ICYATQNRQDAV-KALAERSDLVLVVGSTNSSNSNRLQEKASCVGVNAYLIDSEKDI-----------------KTEWLENVKV-VGVTAGASAPEVLVKEVIARL 282          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_CLOPE (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Clostridium perfringens GN=ispH PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.645e-13
Identity = 45/122 (36.89%), Postives = 69/122 (56.56%), Query Frame = -3
Query:  145 VENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEI 510
            +   ++  ++FNTIC AT  RQ ++ ++ +E  DL+ V+GG NSSNT+ L EI +     SY I++ K +         L+  E V+          TIGIT+GASTPD  + EV+ K+ E+
Sbjct:  178 IVRASKEIVAFNTICSATDVRQKSVQELSKE-ADLVFVIGGKNSSNTTKLYEICKKECPKSYHIENVKELDE------SLLEDESVK----------TIGITAGASTPDWIINEVISKIKEL 282          
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_CLOP1 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=ispH PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.645e-13
Identity = 45/122 (36.89%), Postives = 69/122 (56.56%), Query Frame = -3
Query:  145 VENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEI 510
            +   ++  ++FNTIC AT  RQ ++ ++ +E  DL+ V+GG NSSNT+ L EI +     SY I++ K +         L+  E V+          TIGIT+GASTPD  + EV+ K+ E+
Sbjct:  178 IVRASKEIVAFNTICSATDVRQKSVQELSKE-ADLVFVIGGKNSSNTTKLYEICKKECPKSYHIENVKELDE------SLLEDESVK----------TIGITAGASTPDWIINEVISKIKEL 282          
The following BLAST results are available for this feature:
BLAST of CX291040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
ISPH_PROM96.220e-4258.164-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROM16.220e-4258.624-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNS96.877e-4155.564-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_BORPE9.359e-1441.284-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_BORPA9.359e-1441.284-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_BORBR9.359e-1441.284-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_THETN1.596e-1336.364-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PSYIN3.557e-1343.404-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CLOPE4.645e-1336.894-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CLOP14.645e-1336.894-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionC03003C06SK OF2 Citrus clementina cDNA clone C03003C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291040 ID=CX291040; Name=CX291040; organism=Citrus clementina; type=EST; length=575bp
GATTAGATGGGCACTAATAAAAGACCCGACAGAGGGCTGTGTTTATAATT
TTACAATATCTAGTGATACAATCACATCGAAATTTATTGATAATGTGTAT
GTTTGGACCTCAGTTTACGCTAATTGCAAGGCTTCTTCACGCTTGATCTC
GAATACCTTTTTAAGGACCTCTTCAACAGCCTTATCTGGGGTGGAGGCAC
CGGATGTTATACCGATTGTGATCTGGCCGTTCGGCAGCCAATTTTCTTTC
TCCACCAGCTCACCATGCATCAATTTATATGCTATTTTGTTTCCGGGGCC
TATTCTCTTCTCACTATCGATCCAGTATGAGGGAATTCCACGGTCTTCTG
CAATCTCTTGAAGGTGTGAGGTATTGCTCGAGTTCCACCCACCAACAACC
AAGATAAGATCGACCTTTTCCTCAACCATCTTATACATTGCATCTTGTCG
CTCTTGTGTAGCATCACAAATTGTGTTGAAGCTTATGAAGTGTTCATTGA
CATTTTCAACCCCAAATTTACGCATCATGGTCTTCTCGACTAGTTTTCCA
ATCTCTTCTGTTTCACCCTTGAGCA
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