CX291040
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_PROM9 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9312) GN=ispH PE=3 SV=1) HSP 1 Score: 170.244 bits (430), Expect = 6.220e-42 Identity = 82/141 (58.16%), Postives = 113/141 (80.14%), Query Frame = -3 Query: 154 LKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIG-PGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKV 573 LK ETEEIGK+ EKTM++KFG EN+N HF++FNTICDAT+ERQDAM+ +V+E +D+++V+GG+NSSNT+HLQEIA + I S+ ID+ +RI N I +K + +L K N+LP+G I +GITSGASTPDK V +V++K+ Sbjct: 253 LKSETEEIGKVFEKTMLKKFGPENLNSHFLAFNTICDATEERQDAMFSLVDEDLDILVVIGGFNSSNTTHLQEIAITKNITSFHIDTPERISVEENSILHKPLGLDLELKNNFLPSGNINVGITSGASTPDKVVADVIEKL 393
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_PROM1 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain NATL1A) GN=ispH PE=3 SV=1) HSP 1 Score: 170.244 bits (430), Expect = 6.220e-42 Identity = 85/145 (58.62%), Postives = 116/145 (80.00%), Query Frame = -3 Query: 145 LKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIG-PGNKIAY-KLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEI 573 LK ETEEIG+L EKTM+++FG +NEHF++ NTICDAT+ERQ AM+ +V+E +DL++V+GG+NSSNT+HLQEIA RGI S+ ID+ +RIG N I + L GEL+ +EN+L NG I++GITSGASTPD+ VE+V+ K+ +I Sbjct: 253 LKSETEEIGRLFEKTMLQRFGPAQLNEHFLAINTICDATEERQGAMFSLVDEPLDLMVVIGGFNSSNTTHLQEIAISRGIRSFHIDTPERIGEETNTITHMPLEGGELLTEENFLQNGNISVGITSGASTPDRVVEDVIHKLMKI 397
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_SYNS9 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain CC9902) GN=ispH PE=3 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 6.877e-41 Identity = 80/144 (55.56%), Postives = 113/144 (78.47%), Query Frame = -3 Query: 145 LKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIG-PGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEI 573 LK ETEEIG++ E+TM+ K+G ++NEHF+++NTICDATQERQDAM+ +V+E +DL++V+GG+NSSNT+HLQEIA RGI S+ ID+ RI N I +K + +L + +LP G +T+GITSGASTPD+AVE V++K+ + Sbjct: 253 LKSETEEIGRMFERTMLSKYGPADLNEHFLAYNTICDATQERQDAMFSLVDEPLDLLVVIGGFNSSNTTHLQEIAVSRGIRSFHIDTPDRIDETTNSIEHKPLSEDLKRDQVFLPAGPVTVGITSGASTPDRAVEAVIEKLMRL 396
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_BORPE (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Bordetella pertussis GN=ispH PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 9.359e-14 Identity = 45/109 (41.28%), Postives = 67/109 (61.47%), Query Frame = -3 Query: 145 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEI 471 IC ATQ RQDA+ K++ + DL+LVVG NSSN++ L+E+AE +G+ +Y ID I P WL G+ +IGIT+GAS P+ V++V+++V E+ Sbjct: 202 ICYATQNRQDAV-KLLAPECDLVLVVGSTNSSNSNRLREVAERKGVAAYLIDGAHAIDPA-----------------WL-QGRRSIGITAGASAPEVLVQQVVERVREL 291
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_BORPA (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Bordetella parapertussis GN=ispH PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 9.359e-14 Identity = 45/109 (41.28%), Postives = 67/109 (61.47%), Query Frame = -3 Query: 145 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEI 471 IC ATQ RQDA+ K++ + DL+LVVG NSSN++ L+E+AE +G+ +Y ID I P WL G+ +IGIT+GAS P+ V++V+++V E+ Sbjct: 203 ICYATQNRQDAV-KLLAPECDLVLVVGSTNSSNSNRLREVAERKGVAAYLIDGAHAIDPA-----------------WL-QGRRSIGITAGASAPEVLVQQVVERVREL 292
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_BORBR (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Bordetella bronchiseptica GN=ispH PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 9.359e-14 Identity = 45/109 (41.28%), Postives = 67/109 (61.47%), Query Frame = -3 Query: 145 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEI 471 IC ATQ RQDA+ K++ + DL+LVVG NSSN++ L+E+AE +G+ +Y ID I P WL G+ +IGIT+GAS P+ V++V+++V E+ Sbjct: 203 ICYATQNRQDAV-KLLAPECDLVLVVGSTNSSNSNRLREVAERKGVAAYLIDGAHAIDPA-----------------WL-QGRRSIGITAGASAPEVLVQQVVERVREL 292
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_THETN (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Thermoanaerobacter tengcongensis GN=ispH PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.596e-13 Identity = 44/121 (36.36%), Postives = 73/121 (60.33%), Query Frame = -3 Query: 133 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKREE 495 + + FNTIC+ATQ+RQ+A + +KVD++ V+GG +SSNT L++I E +Y I+ ++I ++++ G + IGIT+GASTPD +EEV++K+ +K E+ Sbjct: 184 KELVYFNTICNATQKRQEAA-DALSKKVDVMFVIGGKHSSNTQKLRKICEKNCKNTYHIER------ADEITFEMLKGHDI------------IGITAGASTPDYVIEEVIEKIKSLKGED 285
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_PSYIN (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Psychromonas ingrahamii (strain 37) GN=ispH PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 3.557e-13 Identity = 46/106 (43.40%), Postives = 64/106 (60.38%), Query Frame = -3 Query: 154 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKV 471 IC ATQ RQDA+ K + E+ DL+LVVG NSSN++ LQE A G+ +Y IDSEK I K WL N ++ +G+T+GAS P+ V+EV+ ++ Sbjct: 196 ICYATQNRQDAV-KALAERSDLVLVVGSTNSSNSNRLQEKASCVGVNAYLIDSEKDI-----------------KTEWLENVKV-VGVTAGASAPEVLVKEVIARL 282
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_CLOPE (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Clostridium perfringens GN=ispH PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 4.645e-13 Identity = 45/122 (36.89%), Postives = 69/122 (56.56%), Query Frame = -3 Query: 145 VENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEI 510 + ++ ++FNTIC AT RQ ++ ++ +E DL+ V+GG NSSNT+ L EI + SY I++ K + L+ E V+ TIGIT+GASTPD + EV+ K+ E+ Sbjct: 178 IVRASKEIVAFNTICSATDVRQKSVQELSKE-ADLVFVIGGKNSSNTTKLYEICKKECPKSYHIENVKELDE------SLLEDESVK----------TIGITAGASTPDWIINEVISKIKEL 282
BLAST of CX291040 vs. ExPASy Swiss-Prot
Match: ISPH_CLOP1 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=ispH PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 4.645e-13 Identity = 45/122 (36.89%), Postives = 69/122 (56.56%), Query Frame = -3 Query: 145 VENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEI 510 + ++ ++FNTIC AT RQ ++ ++ +E DL+ V+GG NSSNT+ L EI + SY I++ K + L+ E V+ TIGIT+GASTPD + EV+ K+ E+ Sbjct: 178 IVRASKEIVAFNTICSATDVRQKSVQELSKE-ADLVFVIGGKNSSNTTKLYEICKKECPKSYHIENVKELDE------SLLEDESVK----------TIGITAGASTPDWIINEVISKIKEL 282 The following BLAST results are available for this feature:
BLAST of CX291040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 90
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Sequences
The
following sequences are available for this feature:
EST sequence >CX291040 ID=CX291040; Name=CX291040; organism=Citrus clementina; type=EST; length=575bpback to top |