CX291053

Overview
NameCX291053
Unique NameCX291053
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length481
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291053 vs. ExPASy Swiss-Prot
Match: PR1A_HORVU (Pathogenesis-related protein 1A/1B OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.049e-25
Identity = 56/109 (51.38%), Postives = 70/109 (64.22%), Query Frame = 3
Query:   63 FDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFS 386
            F+I NNC  T+W A +P GGG +L  GQT +I    GT+A RIWART C F+  G G C+TGDC G L C   G  P TLAE+ +   +  DF D+S IDGFN+ M+FS
Sbjct:   23 FNIKNNCGSTIWPAGIPVGGGFELGSGQTSSINVPAGTQAGRIWARTGCSFNG-GSGSCQTGDCGGQLSCSLSGQPPATLAEFTIGGGSTQDFYDISVIDGFNLAMDFS 130          
BLAST of CX291053 vs. ExPASy Swiss-Prot
Match: TLP_WHEAT (Thaumatin-like protein PWIR2 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.496e-25
Identity = 57/109 (52.29%), Postives = 69/109 (63.30%), Query Frame = 3
Query:   63 FDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFS 386
            F+I NNC  T+W A +P GGG  L  GQT +I    GT+A RIWART C F+  G G C+TGDC G L C   G  P TLAEY +   +  DF D+S IDGFN+ M+FS
Sbjct:   23 FNIKNNCGFTIWPAGIPVGGGFALGSGQTSSINVPAGTQAGRIWARTGCSFNG-GSGSCQTGDCGGQLSCSLSGRPPATLAEYTIGGGSTQDFYDISVIDGFNLAMDFS 130          
BLAST of CX291053 vs. ExPASy Swiss-Prot
Match: RST4_AVESA (Thaumatin-like pathogenesis-related protein 4 OS=Avena sativa GN=RASTL-4 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 7.787e-25
Identity = 62/136 (45.59%), Postives = 82/136 (60.29%), Query Frame = 3
Query:   63 FDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVP 467
            F ITNNC  TVW AA+P GGG+QLD+GQTWT+    GT + RIW RT C F+  G G C+TGDC G L C   G  P TLAE+++    + D+ D+S ID +N+ M+FS    S    ++C  +    CP+    P
Sbjct:   24 FTITNNCGYTVWPAAIPVGGGQQLDQGQTWTLNVPAGTNSGRIWGRTGCSFN-GGSGSCQTGDCAGALSCTLSG-QPATLAEFSIG--GEHDYYDISVIDVYNLAMDFSC---STGDALQCRDS---SCPDAYHQP 149          
BLAST of CX291053 vs. ExPASy Swiss-Prot
Match: PR5_ARATH (Pathogenesis-related protein 5 OS=Arabidopsis thaliana GN=At1g75040 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.918e-23
Identity = 62/143 (43.36%), Postives = 79/143 (55.24%), Query Frame = 3
Query:   63 FDITNNCPDTVWAAAVPG-------GGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEF--SSVSPSCNRVIKCTANILGECPNELKV 464
            F + NNCP TVWA  + G       GG +L  G +  +TA  G  + R WART C FDASG G+C TGDC G L C G G  P TLAE+ L      DF D+S +DG+NV +    S  S  C +   C +++   CP+ LKV
Sbjct:   26 FTLRNNCPTTVWAGTLAGQGPKLGDGGFELTPGASRQLTAPAGW-SGRFWARTGCNFDASGNGRCVTGDCGG-LRCNGGGVPPVTLAEFTLVGDGGKDFYDVSLVDGYNVKLGIRPSGGSGDC-KYAGCVSDLNAACPDMLKV 165          
BLAST of CX291053 vs. ExPASy Swiss-Prot
Match: RST1_AVESA (Thaumatin-like pathogenesis-related protein 1 OS=Avena sativa GN=RASTL-1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.770e-22
Identity = 63/136 (46.32%), Postives = 75/136 (55.15%), Query Frame = 3
Query:   63 FDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVP 467
            F ITNNC  TVW A +P GGG QL+  Q+  I    GT A RIW RT C F+ +G+G C TGDC G L C   G  P TLAEY +      DF D+S IDGFN+ M+FS    S    +KC       CP+    P
Sbjct:   24 FRITNNCGFTVWPAGIPVGGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFN-NGRGSCATGDCAGALSCTLSG-QPATLAEYTIG--GSQDFYDISVIDGFNLAMDFSC---STGVALKCRD---ANCPDAYHHP 149          
BLAST of CX291053 vs. ExPASy Swiss-Prot
Match: RST2_AVESA (Thaumatin-like pathogenesis-related protein 2 OS=Avena sativa GN=RASTL-2 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.170e-22
Identity = 62/136 (45.59%), Postives = 75/136 (55.15%), Query Frame = 3
Query:   63 FDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVP 467
            F ITNNC  TVW A +P GGG QL+  Q+  I    GT A RIW RT C F+ +G+G C TGDC G L C   G  P TLAEY +      DF D+S IDG+N+ M+FS    S    +KC       CP+    P
Sbjct:   24 FRITNNCGFTVWPAGIPVGGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFN-NGRGSCATGDCAGALSCTLSG-QPATLAEYTIG--GSQDFYDISVIDGYNLAMDFSC---STGVALKCRD---ANCPDAYHHP 149          
BLAST of CX291053 vs. ExPASy Swiss-Prot
Match: RST3_AVESA (Thaumatin-like pathogenesis-related protein 3 OS=Avena sativa GN=RASTL-3 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 8.059e-22
Identity = 59/121 (48.76%), Postives = 71/121 (58.68%), Query Frame = 3
Query:   63 FDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKC 422
            F ITNNC  TVW A +P GGG QL+  Q+  I    GT A RIW RT C F+ +G+G C TGDC G L C   G  P TLAEY +      DF D+S IDG+N+ M+FS    S    +KC
Sbjct:   24 FRITNNCGFTVWPAGIPVGGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFN-NGRGSCATGDCAGALSCTLSG-QPATLAEYTIG--GSQDFYDISVIDGYNLAMDFSC---STGVALKC 137          
BLAST of CX291053 vs. ExPASy Swiss-Prot
Match: TLP1_PYRPY (Thaumatin-like protein 1 OS=Pyrus pyrifolia GN=TL1 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.345e-21
Identity = 59/149 (39.60%), Postives = 79/149 (53.02%), Query Frame = 3
Query:   60 KFDITNNCPDTVWAAAVPGGGR--------QLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDC-NGLLECQGYGAA-PNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFS--SVSPSCNRVIKCTANILGECPNELKVPG 470
            KF  TN CP+TVW   + GGG         +L  G + ++T +    + R W R+ C  D+SGK KC TGDC +G + C G GA+ P +L E  L      DF D+S +DGFN+P++ +    S  CN    C ANI   CP EL   G
Sbjct:   24 KFTFTNKCPNTVWPGTLTGGGGPQLLSTGFELASGASTSLTVQ-APWSGRFWGRSHCSIDSSGKFKCSTGDCGSGQISCNGAGASPPASLVELTLATNGGQDFYDVSLVDGFNLPIKLAPRGGSGDCNST-SCAANINTVCPAELSDKG 170          
BLAST of CX291053 vs. ExPASy Swiss-Prot
Match: TP1A_MALDO (Thaumatin-like protein 1a OS=Malus domestica GN=TL1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.139e-18
Identity = 56/149 (37.58%), Postives = 76/149 (51.01%), Query Frame = 3
Query:   60 KFDITNNCPDTVWAAAVPGG--------GRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDC-NGLLECQGYGAA-PNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCN----RVIKCTANILGECPNELKV 464
            K   TNNCP+TVW   + G         G +L    + ++ A P   + R W RT+C  DA+GK  CET DC +G + C G GA  P TL E  +      D+ D+S +DGFN+PM   SV+P       +   C AN+   CP  L+V
Sbjct:   26 KITFTNNCPNTVWPGTLTGDQKPQLSLTGFELASKASRSVDA-PSPWSGRFWGRTRCSTDAAGKFTCETADCGSGQVACNGAGAVPPATLVEITIAANGGQDYYDVSLVDGFNLPM---SVAPQGGTGECKPSSCPANVNKVCPAPLQV 170          
BLAST of CX291053 vs. ExPASy Swiss-Prot
Match: TLP2_PRUPE (Thaumatin-like protein 2 OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 5.405e-18
Identity = 61/145 (42.07%), Postives = 77/145 (53.10%), Query Frame = 3
Query:   75 NNCPDTVWAAAVPGGGRQLDK------GQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDC-NGLLECQG-YGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSP-----SCNRVIKCTANILGECPNELKVPG 470
            NNCP TVW A+   G  QL         Q       P   + R WART+C  DASGK  CET DC +G L C G  G  P TLAE+ +      DF D+S +DGFN+PM   SV+P     +C ++  C AN+   CP+EL+  G
Sbjct:   30 NNCPYTVWPASF--GNPQLSTTGFELASQASFQLDTPVPWSGRFWARTRCSTDASGKFVCETADCDSGQLMCNGKTGIPPATLAEFTIAAGGGQDFYDVSLVDGFNLPM---SVTPQGGTGTC-KMGSCAANVNLVCPSELQKIG 168          
The following BLAST results are available for this feature:
BLAST of CX291053 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PR1A_HORVU2.049e-2551.38Pathogenesis-related protein 1A/1B OS=Hordeum vulg... [more]
TLP_WHEAT3.496e-2552.29Thaumatin-like protein PWIR2 OS=Triticum aestivum ... [more]
RST4_AVESA7.787e-2545.59Thaumatin-like pathogenesis-related protein 4 OS=A... [more]
PR5_ARATH1.918e-2343.36Pathogenesis-related protein 5 OS=Arabidopsis thal... [more]
RST1_AVESA2.770e-2246.32Thaumatin-like pathogenesis-related protein 1 OS=A... [more]
RST2_AVESA6.170e-2245.59Thaumatin-like pathogenesis-related protein 2 OS=A... [more]
RST3_AVESA8.059e-2248.76Thaumatin-like pathogenesis-related protein 3 OS=A... [more]
TLP1_PYRPY2.345e-2139.60Thaumatin-like protein 1 OS=Pyrus pyrifolia GN=TL1... [more]
TP1A_MALDO4.139e-1837.58Thaumatin-like protein 1a OS=Malus domestica GN=TL... [more]
TLP2_PRUPE5.405e-1842.07Thaumatin-like protein 2 OS=Prunus persica PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionC03003E04SK OF2 Citrus clementina cDNA clone C03003E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291053 ID=CX291053; Name=CX291053; organism=Citrus clementina; type=EST; length=481bp
CTCTTCCCATTTCTTCTGCTCTTCTTATTATCATTTCCATCACCCTGACT
CATGCTGCCAAATTCGATATCACAAACAATTGCCCCGACACCGTCTGGGC
CGCCGCTGTGCCCGGAGGCGGCAGGCAACTCGACAAGGGTCAAACATGGA
CCATCACCGCCGAGCCAGGCACAAAAGCAGCCCGCATTTGGGCTCGAACC
AAATGCCAGTTTGATGCTTCCGGCAAAGGCAAATGCGAGACCGGTGACTG
TAACGGACTCCTCGAGTGCCAAGGCTACGGTGCAGCACCTAACACCTTGG
CCGAGTACGCGTTGAAGCAATTTAATGACATGGATTTCATTGACATGTCC
AACATTGACGGATTCAATGTTCCCATGGAATTTAGCTCTGTCTCTCCCTC
ATGCAACCGCGTGATCAAGTGCACTGCTAACATTCTTGGCGAGTGCCCGA
ATGAATTGAAGGTTCCTGGAGGATGTAACGG
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