CX291092
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX291092 vs. ExPASy Swiss-Prot
Match: TRPB_PROMT (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain NATL2A) GN=trpB PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 7.689e-26 Identity = 61/109 (55.96%), Postives = 71/109 (65.14%), Query Frame = 3 Query: 171 KQSDPAPWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 497 K SD +P RP+ VPETL+ AL ELE A + D F EL+ +L+ YVGR TPLY A RLTEHYR+ GP I+LKREDLNHTGAHKINNA+GQA Sbjct: 10 KDSDLSPLTRPNTLGRFGKYGGQYVPETLIPALIELEQAAKEAWKDSSFNSELNHLLKTYVGRSTPLYEATRLTEHYRKNTLKGPRIWLKREDLNHTGAHKINNALGQA 118
BLAST of CX291092 vs. ExPASy Swiss-Prot
Match: TRPB_PROM1 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain NATL1A) GN=trpB PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 7.689e-26 Identity = 61/109 (55.96%), Postives = 71/109 (65.14%), Query Frame = 3 Query: 171 KQSDPAPWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 497 K SD +P RP+ VPETL+ AL ELE A + D F EL+ +L+ YVGR TPLY A RLTEHYR+ GP I+LKREDLNHTGAHKINNA+GQA Sbjct: 10 KDSDLSPLTRPNALGRFGKYGGQYVPETLIPALIELEQAAKEAWKDSSFNSELNHLLKTYVGRSTPLYEATRLTEHYRKNTLKGPRIWLKREDLNHTGAHKINNALGQA 118
BLAST of CX291092 vs. ExPASy Swiss-Prot
Match: TRPB_SYNPW (Tryptophan synthase beta chain OS=Synechococcus sp. (strain WH7803) GN=trpB PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 1.312e-25 Identity = 64/107 (59.81%), Postives = 72/107 (67.29%), Query Frame = 3 Query: 177 SDPAPWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 497 SD A RP VPETLM AL+ELE A + D F EL+ +L+ YVGR TPLY AERLTEHYRR + GGP I+LKREDLNHTGAHKINNA+GQA Sbjct: 12 SDLAVSSRPAAAGRFGRYGGQYVPETLMPALAELEQAAAQAWKDPAFTAELNRLLKSYVGRATPLYEAERLTEHYRRAD-GGPRIWLKREDLNHTGAHKINNALGQA 117
BLAST of CX291092 vs. ExPASy Swiss-Prot
Match: TRPB_THEEB (Tryptophan synthase beta chain OS=Thermosynechococcus elongatus (strain BP-1) GN=trpB PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 2.922e-25 Identity = 61/99 (61.62%), Postives = 67/99 (67.68%), Query Frame = 3 Query: 198 RPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 494 RPD VPETLM ALSELE+A D DFQ EL +LRDYVGR +PLYFAERL+ HY + P IYLKREDLNHTGAHKINNA+GQ Sbjct: 14 RPDARGRFGRFGGKYVPETLMPALSELEAAFAHYRQDPDFQAELQQLLRDYVGRPSPLYFAERLSAHYAH-DQVQPQIYLKREDLNHTGAHKINNALGQ 111
BLAST of CX291092 vs. ExPASy Swiss-Prot
Match: TRPB_SYNSC (Tryptophan synthase beta chain OS=Synechococcus sp. (strain CC9605) GN=trpB PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 2.922e-25 Identity = 61/103 (59.22%), Postives = 72/103 (69.90%), Query Frame = 3 Query: 189 PWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 497 P RP VPETLM AL+ELE A + +D F +EL+ +L++YVGR TPLY AERLT HYRR + GGP I+LKREDLNHTGAHKINNA+GQA Sbjct: 18 PAVRPGAHGRFGRFGGQYVPETLMPALAELEQAAAQAWNDPAFTDELNRLLKNYVGRATPLYEAERLTAHYRRAD-GGPRIWLKREDLNHTGAHKINNALGQA 119
BLAST of CX291092 vs. ExPASy Swiss-Prot
Match: TRPB_SYNPX (Tryptophan synthase beta chain OS=Synechococcus sp. (strain WH8102) GN=trpB PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 2.922e-25 Identity = 64/109 (58.72%), Postives = 74/109 (67.89%), Query Frame = 3 Query: 180 DPAPWQ---RPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 497 DPA Q RP VPETLM AL+ELE A + +D F EL+ +L++YVGR TPLY AERLT HYRR + GGP I+LKREDLNHTGAHKINNA+GQA Sbjct: 12 DPASLQPSVRPGAHGRFGRFGGQYVPETLMPALAELEQAAAQAWNDPAFTAELNQLLKNYVGRATPLYEAERLTAHYRRAD-GGPRIWLKREDLNHTGAHKINNALGQA 119
BLAST of CX291092 vs. ExPASy Swiss-Prot
Match: TRPB_SYNJB (Tryptophan synthase beta chain OS=Synechococcus sp. GN=trpB PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 3.816e-25 Identity = 60/102 (58.82%), Postives = 68/102 (66.67%), Query Frame = 3 Query: 189 PWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 494 P RPD VPETLM AL+ELE A D DF+ E +LRD+VGR +PLYFA+RLTE+Y GGP IYLKREDLNHTGAHKINNA+GQ Sbjct: 18 PQVRPDPQGRFGPFGGRFVPETLMSALTELEEAFEHHWRDPDFRAEFHNLLRDFVGRPSPLYFAQRLTEYY-----GGPQIYLKREDLNHTGAHKINNALGQ 114
BLAST of CX291092 vs. ExPASy Swiss-Prot
Match: TRPB_SYNS3 (Tryptophan synthase beta chain OS=Synechococcus sp. (strain CC9311) GN=trpB PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 6.509e-25 Identity = 63/109 (57.80%), Postives = 73/109 (66.97%), Query Frame = 3 Query: 180 DPA---PWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 497 DPA P RP+ VPETLM AL+ELE A + D F EL+ +L+ YVGR TPLY AERL+ HYRR + GGP I+LKREDLNHTGAHKINNA+GQA Sbjct: 12 DPASLMPSVRPEAHGRYGRYGGQYVPETLMPALAELEQAAAEAWKDSAFTTELNRLLKSYVGRATPLYEAERLSAHYRR-SDGGPRIWLKREDLNHTGAHKINNALGQA 119
BLAST of CX291092 vs. ExPASy Swiss-Prot
Match: TRPB_PROMM (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9313) GN=trpB PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 3.230e-24 Identity = 63/109 (57.80%), Postives = 69/109 (63.30%), Query Frame = 3 Query: 171 KQSDPAPWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 497 K +D A RP VPETLM AL+ELE A D F EL +LR YVGR TPLY AERLT HY R + GGP I+LKREDLNHTGAHKINNA+GQA Sbjct: 30 KDADLAVSARPSAQGRFGRYGGQYVPETLMPALAELEQAAALAWKDPAFTAELDRLLRSYVGRATPLYEAERLTAHYCR-SDGGPRIWLKREDLNHTGAHKINNALGQA 137
BLAST of CX291092 vs. ExPASy Swiss-Prot
Match: TRPB_STRTD (Tryptophan synthase beta chain OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=trpB PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 5.510e-24 Identity = 56/101 (55.45%), Postives = 68/101 (67.33%), Query Frame = 3 Query: 192 WQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 494 +Q+PD VPETLM A+ EL+ A + +D FQ EL +L++YVGRETPLY A+RLT+H GG IYLKREDLNHTGAHKINNA+GQ Sbjct: 3 YQQPDAKGFYGKFGGQFVPETLMTAVIELDKAYREAKEDSSFQAELDDLLKNYVGRETPLYHAKRLTDHI-----GGAQIYLKREDLNHTGAHKINNALGQ 98 The following BLAST results are available for this feature:
BLAST of CX291092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 324
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Sequences
The
following sequences are available for this feature:
EST sequence >CX291092 ID=CX291092; Name=CX291092; organism=Citrus clementina; type=EST; length=497bpback to top |