CX291092

Overview
NameCX291092
Unique NameCX291092
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length497
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291092 vs. ExPASy Swiss-Prot
Match: TRPB_PROMT (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain NATL2A) GN=trpB PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 7.689e-26
Identity = 61/109 (55.96%), Postives = 71/109 (65.14%), Query Frame = 3
Query:  171 KQSDPAPWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 497
            K SD +P  RP+            VPETL+ AL ELE A  +   D  F  EL+ +L+ YVGR TPLY A RLTEHYR+    GP I+LKREDLNHTGAHKINNA+GQA
Sbjct:   10 KDSDLSPLTRPNTLGRFGKYGGQYVPETLIPALIELEQAAKEAWKDSSFNSELNHLLKTYVGRSTPLYEATRLTEHYRKNTLKGPRIWLKREDLNHTGAHKINNALGQA 118          
BLAST of CX291092 vs. ExPASy Swiss-Prot
Match: TRPB_PROM1 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain NATL1A) GN=trpB PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 7.689e-26
Identity = 61/109 (55.96%), Postives = 71/109 (65.14%), Query Frame = 3
Query:  171 KQSDPAPWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 497
            K SD +P  RP+            VPETL+ AL ELE A  +   D  F  EL+ +L+ YVGR TPLY A RLTEHYR+    GP I+LKREDLNHTGAHKINNA+GQA
Sbjct:   10 KDSDLSPLTRPNALGRFGKYGGQYVPETLIPALIELEQAAKEAWKDSSFNSELNHLLKTYVGRSTPLYEATRLTEHYRKNTLKGPRIWLKREDLNHTGAHKINNALGQA 118          
BLAST of CX291092 vs. ExPASy Swiss-Prot
Match: TRPB_SYNPW (Tryptophan synthase beta chain OS=Synechococcus sp. (strain WH7803) GN=trpB PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.312e-25
Identity = 64/107 (59.81%), Postives = 72/107 (67.29%), Query Frame = 3
Query:  177 SDPAPWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 497
            SD A   RP             VPETLM AL+ELE A  +   D  F  EL+ +L+ YVGR TPLY AERLTEHYRR + GGP I+LKREDLNHTGAHKINNA+GQA
Sbjct:   12 SDLAVSSRPAAAGRFGRYGGQYVPETLMPALAELEQAAAQAWKDPAFTAELNRLLKSYVGRATPLYEAERLTEHYRRAD-GGPRIWLKREDLNHTGAHKINNALGQA 117          
BLAST of CX291092 vs. ExPASy Swiss-Prot
Match: TRPB_THEEB (Tryptophan synthase beta chain OS=Thermosynechococcus elongatus (strain BP-1) GN=trpB PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.922e-25
Identity = 61/99 (61.62%), Postives = 67/99 (67.68%), Query Frame = 3
Query:  198 RPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 494
            RPD            VPETLM ALSELE+A      D DFQ EL  +LRDYVGR +PLYFAERL+ HY   +   P IYLKREDLNHTGAHKINNA+GQ
Sbjct:   14 RPDARGRFGRFGGKYVPETLMPALSELEAAFAHYRQDPDFQAELQQLLRDYVGRPSPLYFAERLSAHYAH-DQVQPQIYLKREDLNHTGAHKINNALGQ 111          
BLAST of CX291092 vs. ExPASy Swiss-Prot
Match: TRPB_SYNSC (Tryptophan synthase beta chain OS=Synechococcus sp. (strain CC9605) GN=trpB PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.922e-25
Identity = 61/103 (59.22%), Postives = 72/103 (69.90%), Query Frame = 3
Query:  189 PWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 497
            P  RP             VPETLM AL+ELE A  +  +D  F +EL+ +L++YVGR TPLY AERLT HYRR + GGP I+LKREDLNHTGAHKINNA+GQA
Sbjct:   18 PAVRPGAHGRFGRFGGQYVPETLMPALAELEQAAAQAWNDPAFTDELNRLLKNYVGRATPLYEAERLTAHYRRAD-GGPRIWLKREDLNHTGAHKINNALGQA 119          
BLAST of CX291092 vs. ExPASy Swiss-Prot
Match: TRPB_SYNPX (Tryptophan synthase beta chain OS=Synechococcus sp. (strain WH8102) GN=trpB PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.922e-25
Identity = 64/109 (58.72%), Postives = 74/109 (67.89%), Query Frame = 3
Query:  180 DPAPWQ---RPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 497
            DPA  Q   RP             VPETLM AL+ELE A  +  +D  F  EL+ +L++YVGR TPLY AERLT HYRR + GGP I+LKREDLNHTGAHKINNA+GQA
Sbjct:   12 DPASLQPSVRPGAHGRFGRFGGQYVPETLMPALAELEQAAAQAWNDPAFTAELNQLLKNYVGRATPLYEAERLTAHYRRAD-GGPRIWLKREDLNHTGAHKINNALGQA 119          
BLAST of CX291092 vs. ExPASy Swiss-Prot
Match: TRPB_SYNJB (Tryptophan synthase beta chain OS=Synechococcus sp. GN=trpB PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.816e-25
Identity = 60/102 (58.82%), Postives = 68/102 (66.67%), Query Frame = 3
Query:  189 PWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 494
            P  RPD            VPETLM AL+ELE A      D DF+ E   +LRD+VGR +PLYFA+RLTE+Y     GGP IYLKREDLNHTGAHKINNA+GQ
Sbjct:   18 PQVRPDPQGRFGPFGGRFVPETLMSALTELEEAFEHHWRDPDFRAEFHNLLRDFVGRPSPLYFAQRLTEYY-----GGPQIYLKREDLNHTGAHKINNALGQ 114          
BLAST of CX291092 vs. ExPASy Swiss-Prot
Match: TRPB_SYNS3 (Tryptophan synthase beta chain OS=Synechococcus sp. (strain CC9311) GN=trpB PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 6.509e-25
Identity = 63/109 (57.80%), Postives = 73/109 (66.97%), Query Frame = 3
Query:  180 DPA---PWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 497
            DPA   P  RP+            VPETLM AL+ELE A  +   D  F  EL+ +L+ YVGR TPLY AERL+ HYRR + GGP I+LKREDLNHTGAHKINNA+GQA
Sbjct:   12 DPASLMPSVRPEAHGRYGRYGGQYVPETLMPALAELEQAAAEAWKDSAFTTELNRLLKSYVGRATPLYEAERLSAHYRR-SDGGPRIWLKREDLNHTGAHKINNALGQA 119          
BLAST of CX291092 vs. ExPASy Swiss-Prot
Match: TRPB_PROMM (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9313) GN=trpB PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.230e-24
Identity = 63/109 (57.80%), Postives = 69/109 (63.30%), Query Frame = 3
Query:  171 KQSDPAPWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 497
            K +D A   RP             VPETLM AL+ELE A      D  F  EL  +LR YVGR TPLY AERLT HY R + GGP I+LKREDLNHTGAHKINNA+GQA
Sbjct:   30 KDADLAVSARPSAQGRFGRYGGQYVPETLMPALAELEQAAALAWKDPAFTAELDRLLRSYVGRATPLYEAERLTAHYCR-SDGGPRIWLKREDLNHTGAHKINNALGQA 137          
BLAST of CX291092 vs. ExPASy Swiss-Prot
Match: TRPB_STRTD (Tryptophan synthase beta chain OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=trpB PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.510e-24
Identity = 56/101 (55.45%), Postives = 68/101 (67.33%), Query Frame = 3
Query:  192 WQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 494
            +Q+PD            VPETLM A+ EL+ A  +  +D  FQ EL  +L++YVGRETPLY A+RLT+H      GG  IYLKREDLNHTGAHKINNA+GQ
Sbjct:    3 YQQPDAKGFYGKFGGQFVPETLMTAVIELDKAYREAKEDSSFQAELDDLLKNYVGRETPLYHAKRLTDHI-----GGAQIYLKREDLNHTGAHKINNALGQ 98          
The following BLAST results are available for this feature:
BLAST of CX291092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 324
Match NameE-valueIdentityDescription
TRPB_PROMT7.689e-2655.96Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_PROM17.689e-2655.96Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_SYNPW1.312e-2559.81Tryptophan synthase beta chain OS=Synechococcus sp... [more]
TRPB_THEEB2.922e-2561.62Tryptophan synthase beta chain OS=Thermosynechococ... [more]
TRPB_SYNSC2.922e-2559.22Tryptophan synthase beta chain OS=Synechococcus sp... [more]
TRPB_SYNPX2.922e-2558.72Tryptophan synthase beta chain OS=Synechococcus sp... [more]
TRPB_SYNJB3.816e-2558.82Tryptophan synthase beta chain OS=Synechococcus sp... [more]
TRPB_SYNS36.509e-2557.80Tryptophan synthase beta chain OS=Synechococcus sp... [more]
TRPB_PROMM3.230e-2457.80Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_STRTD5.510e-2455.45Tryptophan synthase beta chain OS=Streptococcus th... [more]

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Properties
Property NameValue
Genbank descriptionC03004A03SK OF2 Citrus clementina cDNA clone C03004A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291092 ID=CX291092; Name=CX291092; organism=Citrus clementina; type=EST; length=497bp
TCGCCACAGGTTCAAGCTCCTGTTGCAAACTCGCAAAGCCCTGCGCTTTC
ACGACATCGAATTCCTCGCAGTCGCCCTTCAAGTTGAAGAAATTTACAGC
CAGCCCAGCCAAATCGACGTCCATTCGCTGTACCATTGCGAGAGACCCGG
TCGTTCCCATGGAGGCCAAGAAGCAGTCCGACCCTGCCCCGTGGCAGAGA
CCTGATGTGTTTGGCCGGTTCGGTAGGTTCGGCGGGAAGTTCGTCCCTGA
GACGCTAATGTACGCGCTTTCTGAGCTGGAATCCGCACTTCATAAACTCG
CCGACGACCGAGATTTTCAGGAGGAACTTTCGGGGATTTTGAGAGACTAT
GTCGGCAGGGAGACTCCGCTTTATTTTGCTGAGCGGCTTACGGAGCACTA
CAGGCGGCCTAACGGGGGAGGGCCTCACATATACCTCAAGAGGGAGGACC
TCAACCACACTGGGGCCCACAAGATCAACAATGCTGTTGGCCAAGCT
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