CX291092

Overview
NameCX291092
Unique NameCX291092
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length497
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX291092 vs. ExPASy Swiss-Prot
Match: TRPB_STRP7 (Tryptophan synthase beta chain OS=Streptococcus pneumoniae (strain 70585) GN=trpB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.094e-23
Identity = 57/101 (56.44%), Postives = 67/101 (66.34%), Query Frame = 3 
Query:  192 WQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 494
            +Q P+            VPETLM A+ ELE A  +   D  FQEEL+ +LR YVGRETPLY+A+ LT+H      GG  IYLKREDLNHTGAHKINNA+GQ
Sbjct:    3 YQEPNKDGFYGKFGGRFVPETLMTAVLELEKAYRESQADPSFQEELNQLLRQYVGRETPLYYAKNLTQHI-----GGAKIYLKREDLNHTGAHKINNALGQ 98
[Close]
BLAST of CX291092 vs. ExPASy Swiss-Prot
Match: TRPB_STRP4 (Tryptophan synthase beta chain OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=trpB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.094e-23
Identity = 57/101 (56.44%), Postives = 67/101 (66.34%), Query Frame = 3 
Query:  192 WQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 494
            +Q P+            VPETLM A+ ELE A  +   D  FQEEL+ +LR YVGRETPLY+A+ LT+H      GG  IYLKREDLNHTGAHKINNA+GQ
Sbjct:    3 YQEPNKDGFYGKFGGRFVPETLMTAVLELEKAYRESQADPSFQEELNQLLRQYVGRETPLYYAKNLTQHI-----GGAKIYLKREDLNHTGAHKINNALGQ 98
[Close]
BLAST of CX291092 vs. ExPASy Swiss-Prot
Match: TRPB_STRP2 (Tryptophan synthase beta chain OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=trpB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.094e-23
Identity = 57/101 (56.44%), Postives = 67/101 (66.34%), Query Frame = 3 
Query:  192 WQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 494
            +Q P+            VPETLM A+ ELE A  +   D  FQEEL+ +LR YVGRETPLY+A+ LT+H      GG  IYLKREDLNHTGAHKINNA+GQ
Sbjct:    3 YQEPNKDGFYGKFGGRFVPETLMTAVLELEKAYRESQADPSFQEELNQLLRQYVGRETPLYYAKNLTQHI-----GGAKIYLKREDLNHTGAHKINNALGQ 98
[Close]
BLAST of CX291092 vs. ExPASy Swiss-Prot
Match: TRPB_GLOVI (Tryptophan synthase beta chain OS=Gloeobacter violaceus GN=trpB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.094e-23
Identity = 55/85 (64.71%), Postives = 65/85 (76.47%), Query Frame = 3 
Query:  243 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 497
            VPETLM AL++LE+A ++   D  F  E +G LRD+VGR TPLYFAERLT H+     GG  I+LKREDLNHTGAHKINNA+GQA
Sbjct:   34 VPETLMSALAQLEAAFNQYRHDPQFLAEFAGHLRDFVGRPTPLYFAERLTAHW-----GGGRIFLKREDLNHTGAHKINNALGQA 113
[Close]
BLAST of CX291092 vs. ExPASy Swiss-Prot
Match: TRPB_STRT1 (Tryptophan synthase beta chain OS=Streptococcus thermophilus (strain CNRZ 1066) GN=trpB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.735e-23
Identity = 55/101 (54.46%), Postives = 68/101 (67.33%), Query Frame = 3 
Query:  192 WQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 494
            +Q+PD            VPETLM A+ EL+ A  +  +D  FQ EL  +L++YVGRETPLY A+RLT++      GG  IYLKREDLNHTGAHKINNA+GQ
Sbjct:    3 YQQPDAKGFYGKFGGQFVPETLMTAVIELDKAYREAKEDSSFQAELDDLLKNYVGRETPLYHAKRLTDYI-----GGAQIYLKREDLNHTGAHKINNALGQ 98
[Close]
BLAST of CX291092 vs. ExPASy Swiss-Prot
Match: TRPB_LISMO (Tryptophan synthase beta chain OS=Listeria monocytogenes GN=trpB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.735e-23
Identity = 57/102 (55.88%), Postives = 66/102 (64.71%), Query Frame = 3 
Query:  192 WQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 497
            +Q PD            VPETLM A+ EL+ A      D  FQ+EL+  L++YVGRETPLYFAE+LT H      GG  IYLKREDLNHTGAHKINN +GQA
Sbjct:    3 YQAPDENGFYGKFGGRFVPETLMKAVKELDEAYQASKTDPAFQKELNYYLKEYVGRETPLYFAEQLTAH-----AGGAKIYLKREDLNHTGAHKINNTIGQA 99
[Close]
BLAST of CX291092 vs. ExPASy Swiss-Prot
Match: TRPB_LISMH (Tryptophan synthase beta chain OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=trpB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.735e-23
Identity = 57/102 (55.88%), Postives = 66/102 (64.71%), Query Frame = 3 
Query:  192 WQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 497
            +Q PD            VPETLM A+ EL+ A      D  FQ+EL+  L++YVGRETPLYFAE+LT H      GG  IYLKREDLNHTGAHKINN +GQA
Sbjct:    3 YQAPDENGFYGKFGGRFVPETLMKAVKELDEAYRASKTDPAFQKELNYYLKEYVGRETPLYFAEQLTAH-----AGGAKIYLKREDLNHTGAHKINNTIGQA 99
[Close]
BLAST of CX291092 vs. ExPASy Swiss-Prot
Match: TRPB_LISMF (Tryptophan synthase beta chain OS=Listeria monocytogenes serotype 4b (strain F2365) GN=trpB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.735e-23
Identity = 57/102 (55.88%), Postives = 66/102 (64.71%), Query Frame = 3 
Query:  192 WQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 497
            +Q PD            VPETLM A+ EL+ A      D  FQ+EL+  L++YVGRETPLYFAE+LT H      GG  IYLKREDLNHTGAHKINN +GQA
Sbjct:    3 YQAPDENGFYGKFGGRFVPETLMKAVKELDEAYRASKTDPAFQKELNYYLKEYVGRETPLYFAEQLTAH-----AGGAKIYLKREDLNHTGAHKINNTIGQA 99
[Close]
BLAST of CX291092 vs. ExPASy Swiss-Prot
Match: TRPB_LISMC (Tryptophan synthase beta chain OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=trpB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.735e-23
Identity = 57/102 (55.88%), Postives = 66/102 (64.71%), Query Frame = 3 
Query:  192 WQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 497
            +Q PD            VPETLM A+ EL+ A      D  FQ+EL+  L++YVGRETPLYFAE+LT H      GG  IYLKREDLNHTGAHKINN +GQA
Sbjct:    3 YQAPDENGFYGKFGGRFVPETLMKAVKELDEAYRASKTDPAFQKELNYYLKEYVGRETPLYFAEQLTAH-----AGGAKIYLKREDLNHTGAHKINNTIGQA 99
[Close]
BLAST of CX291092 vs. ExPASy Swiss-Prot
Match: TRPB_PROM4 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9211) GN=trpB PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.572e-23
Identity = 59/109 (54.13%), Postives = 69/109 (63.30%), Query Frame = 3 
Query:  171 KQSDPAPWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 497
            K  + A   RP V           VPETLM AL+ELE    +   D  F  ELS +L+ YVGR TPLY A+RL++HY     GGP I+LKREDLNHTGAHKINNA+GQA
Sbjct:   10 KDMELANSSRPSVHGRFGRFGGQYVPETLMPALAELEKKAAEAWQDSSFTNELSHLLKTYVGRATPLYEAKRLSQHY-MSREGGPRIWLKREDLNHTGAHKINNALGQA 117
The following BLAST results are available for this feature:
BLAST of CX291092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 324
Match NameE-valueIdentityDescription
TRPB_STRP72.094e-2356.44Tryptophan synthase beta chain OS=Streptococcus pn... [more]
TRPB_STRP42.094e-2356.44Tryptophan synthase beta chain OS=Streptococcus pn... [more]
TRPB_STRP22.094e-2356.44Tryptophan synthase beta chain OS=Streptococcus pn... [more]
TRPB_GLOVI2.094e-2364.71Tryptophan synthase beta chain OS=Gloeobacter viol... [more]
TRPB_STRT12.735e-2354.46Tryptophan synthase beta chain OS=Streptococcus th... [more]
TRPB_LISMO2.735e-2355.88Tryptophan synthase beta chain OS=Listeria monocyt... [more]
TRPB_LISMH2.735e-2355.88Tryptophan synthase beta chain OS=Listeria monocyt... [more]
TRPB_LISMF2.735e-2355.88Tryptophan synthase beta chain OS=Listeria monocyt... [more]
TRPB_LISMC2.735e-2355.88Tryptophan synthase beta chain OS=Listeria monocyt... [more]
TRPB_PROM43.572e-2354.13Tryptophan synthase beta chain OS=Prochlorococcus ... [more]

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Properties
Property NameValue
Genbank descriptionC03004A03SK OF2 Citrus clementina cDNA clone C03004A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291092 ID=CX291092; Name=CX291092; organism=Citrus clementina; type=EST; length=497bp
TCGCCACAGGTTCAAGCTCCTGTTGCAAACTCGCAAAGCCCTGCGCTTTC
ACGACATCGAATTCCTCGCAGTCGCCCTTCAAGTTGAAGAAATTTACAGC
CAGCCCAGCCAAATCGACGTCCATTCGCTGTACCATTGCGAGAGACCCGG
TCGTTCCCATGGAGGCCAAGAAGCAGTCCGACCCTGCCCCGTGGCAGAGA
CCTGATGTGTTTGGCCGGTTCGGTAGGTTCGGCGGGAAGTTCGTCCCTGA
GACGCTAATGTACGCGCTTTCTGAGCTGGAATCCGCACTTCATAAACTCG
CCGACGACCGAGATTTTCAGGAGGAACTTTCGGGGATTTTGAGAGACTAT
GTCGGCAGGGAGACTCCGCTTTATTTTGCTGAGCGGCTTACGGAGCACTA
CAGGCGGCCTAACGGGGGAGGGCCTCACATATACCTCAAGAGGGAGGACC
TCAACCACACTGGGGCCCACAAGATCAACAATGCTGTTGGCCAAGCT
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