CX291092

Overview
NameCX291092
Unique NameCX291092
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length497
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291092 vs. ExPASy Swiss-Prot
Match: TRPB_PSEA6 (Tryptophan synthase beta chain OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=trpB PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.125e-11
Identity = 38/85 (44.71%), Postives = 49/85 (57.65%), Query Frame = 3
Query:  243 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 497
            VPE L+ AL +LE A     +D +FQ+E   +L DY GR T +  +  L  +   PN     +YLKREDL H GAHK N  +GQA
Sbjct:   16 VPELLIPALDQLEQAFIDAQNDPEFQKEFMELLTDYAGRPTAMTLSRNLVSN---PN---VKLYLKREDLLHGGAHKTNQVLGQA 94          
BLAST of CX291092 vs. ExPASy Swiss-Prot
Match: TRPB_HELPY (Tryptophan synthase beta chain OS=Helicobacter pylori GN=trpB PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.125e-11
Identity = 37/85 (43.53%), Postives = 49/85 (57.65%), Query Frame = 3
Query:  243 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 497
            V E L+ AL ELE A      D  FQ+E   +L+D+VGR +PL   + +  + +        +YLKREDL H GAHK N A+GQA
Sbjct:   15 VSELLVPALRELEQAFDACLKDEKFQKEYFRLLKDFVGRPSPLTLCQNIVSNPK------VKLYLKREDLIHGGAHKTNQALGQA 93          
BLAST of CX291092 vs. ExPASy Swiss-Prot
Match: TRPB_ERWCT (Tryptophan synthase beta chain OS=Erwinia carotovora subsp. atroseptica GN=trpB PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.125e-11
Identity = 37/85 (43.53%), Postives = 48/85 (56.47%), Query Frame = 3
Query:  243 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 497
            VP+ L+ AL +LE A      D +FQ E + +L++Y GR T L   + LT       G    +YLKREDL H GAHK N  +GQA
Sbjct:   16 VPQILIPALRQLEEAFVSAQKDPEFQAEFTDLLKNYAGRPTALTLCKNLTA------GTKTKLYLKREDLLHGGAHKTNQVLGQA 94          
BLAST of CX291092 vs. ExPASy Swiss-Prot
Match: TRPB_BUCDN (Tryptophan synthase beta chain OS=Buchnera aphidicola subsp. Diuraphis noxia GN=trpB PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.125e-11
Identity = 38/85 (44.71%), Postives = 47/85 (55.29%), Query Frame = 3
Query:  243 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 497
            VP+ LM AL ELE    +   D +F +    +L++Y GR TPL     LT+      G    IYLKREDL H GAHK N  +GQA
Sbjct:   16 VPQILMPALLELEKNFVEAQKDINFHKTFFNLLKNYAGRPTPLTLCNNLTK------GTKTRIYLKREDLLHGGAHKTNQVLGQA 94          
The following BLAST results are available for this feature:
BLAST of CX291092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 324
Match NameE-valueIdentityDescription
TRPB_PSEA69.125e-1144.71Tryptophan synthase beta chain OS=Pseudoalteromona... [more]
TRPB_HELPY9.125e-1143.53Tryptophan synthase beta chain OS=Helicobacter pyl... [more]
TRPB_ERWCT9.125e-1143.53Tryptophan synthase beta chain OS=Erwinia carotovo... [more]
TRPB_BUCDN9.125e-1144.71Tryptophan synthase beta chain OS=Buchnera aphidic... [more]

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Properties
Property NameValue
Genbank descriptionC03004A03SK OF2 Citrus clementina cDNA clone C03004A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291092 ID=CX291092; Name=CX291092; organism=Citrus clementina; type=EST; length=497bp
TCGCCACAGGTTCAAGCTCCTGTTGCAAACTCGCAAAGCCCTGCGCTTTC
ACGACATCGAATTCCTCGCAGTCGCCCTTCAAGTTGAAGAAATTTACAGC
CAGCCCAGCCAAATCGACGTCCATTCGCTGTACCATTGCGAGAGACCCGG
TCGTTCCCATGGAGGCCAAGAAGCAGTCCGACCCTGCCCCGTGGCAGAGA
CCTGATGTGTTTGGCCGGTTCGGTAGGTTCGGCGGGAAGTTCGTCCCTGA
GACGCTAATGTACGCGCTTTCTGAGCTGGAATCCGCACTTCATAAACTCG
CCGACGACCGAGATTTTCAGGAGGAACTTTCGGGGATTTTGAGAGACTAT
GTCGGCAGGGAGACTCCGCTTTATTTTGCTGAGCGGCTTACGGAGCACTA
CAGGCGGCCTAACGGGGGAGGGCCTCACATATACCTCAAGAGGGAGGACC
TCAACCACACTGGGGCCCACAAGATCAACAATGCTGTTGGCCAAGCT
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