CX291092

Overview
NameCX291092
Unique NameCX291092
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length497
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX291092 vs. ExPASy Swiss-Prot
Match: TRPB_BACAN (Tryptophan synthase beta chain OS=Bacillus anthracis GN=trpB PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.773e-22
Identity = 53/85 (62.35%), Postives = 63/85 (74.12%), Query Frame = 3 
Query:  243 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 497
            VPETLM ++ ELE A  +  +D  FQ+EL+  L+ YVGRETPLYFAE +TE+      GG  IYLKREDLNHTGAHKINN +GQA
Sbjct:   20 VPETLMQSVLELEEAYKEAMEDEAFQKELNHYLKTYVGRETPLYFAENMTEYC-----GGAKIYLKREDLNHTGAHKINNTIGQA 99
[Close]
BLAST of CX291092 vs. ExPASy Swiss-Prot
Match: TRPB_BACAC (Tryptophan synthase beta chain OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=trpB PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.773e-22
Identity = 53/85 (62.35%), Postives = 63/85 (74.12%), Query Frame = 3 
Query:  243 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 497
            VPETLM ++ ELE A  +  +D  FQ+EL+  L+ YVGRETPLYFAE +TE+      GG  IYLKREDLNHTGAHKINN +GQA
Sbjct:   20 VPETLMQSVLELEEAYKEAMEDEAFQKELNHYLKTYVGRETPLYFAENMTEYC-----GGAKIYLKREDLNHTGAHKINNTIGQA 99
[Close]
BLAST of CX291092 vs. ExPASy Swiss-Prot
Match: TRPB_BACAA (Tryptophan synthase beta chain OS=Bacillus anthracis (strain A0248) GN=trpB PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.773e-22
Identity = 53/85 (62.35%), Postives = 63/85 (74.12%), Query Frame = 3 
Query:  243 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 497
            VPETLM ++ ELE A  +  +D  FQ+EL+  L+ YVGRETPLYFAE +TE+      GG  IYLKREDLNHTGAHKINN +GQA
Sbjct:   20 VPETLMQSVLELEEAYKEAMEDEAFQKELNHYLKTYVGRETPLYFAENMTEYC-----GGAKIYLKREDLNHTGAHKINNTIGQA 99
[Close]
BLAST of CX291092 vs. ExPASy Swiss-Prot
Match: TRPB_LACLS (Tryptophan synthase beta chain OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=trpB PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.315e-22
Identity = 55/84 (65.48%), Postives = 61/84 (72.62%), Query Frame = 3 
Query:  243 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 494
            VPETLM A+ ELE A      D  FQ EL  +L+DYVGRE PLYFA+RLTE+      GG  IYLKREDLNHTGAHKINNA+GQ
Sbjct:   20 VPETLMTAVKELEVAYEDSKKDPVFQAELKELLKDYVGRENPLYFAKRLTEY-----AGGAKIYLKREDLNHTGAHKINNALGQ 98
[Close]
BLAST of CX291092 vs. ExPASy Swiss-Prot
Match: TRPB_LACLM (Tryptophan synthase beta chain OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=trpB PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.315e-22
Identity = 55/84 (65.48%), Postives = 61/84 (72.62%), Query Frame = 3 
Query:  243 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 494
            VPETLM A+ ELE A      D  FQ EL  +L+DYVGRE PLYFA+RLTE+      GG  IYLKREDLNHTGAHKINNA+GQ
Sbjct:   20 VPETLMTAVKELEVAYEDSKKDPVFQAELKELLKDYVGRENPLYFAKRLTEY-----AGGAKIYLKREDLNHTGAHKINNALGQ 98
[Close]
BLAST of CX291092 vs. ExPASy Swiss-Prot
Match: TRPB1_AQUAE (Tryptophan synthase beta chain 1 OS=Aquifex aeolicus GN=trpB1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.315e-22
Identity = 53/84 (63.10%), Postives = 61/84 (72.62%), Query Frame = 3 
Query:  243 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 494
            VPETLMYAL ELE    +L  D +FQ+EL   LR+Y GR TPLYFAE+LT++      GG  IYLKREDL HTGAHKINN +GQ
Sbjct:   19 VPETLMYALEELEEKYRELKSDPEFQKELDYYLREYAGRPTPLYFAEKLTKYV-----GGAKIYLKREDLLHTGAHKINNTIGQ 97
[Close]
BLAST of CX291092 vs. ExPASy Swiss-Prot
Match: TRPB_BACC3 (Tryptophan synthase beta chain OS=Bacillus cereus (strain 03BB102) GN=trpB PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.024e-22
Identity = 53/85 (62.35%), Postives = 62/85 (72.94%), Query Frame = 3 
Query:  243 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 497
            VPETLM ++ ELE A  +  +D  FQ+EL+  L  YVGRETPLYFAE +TE+      GG  IYLKREDLNHTGAHKINN +GQA
Sbjct:   20 VPETLMQSVLELEEAYKEAMEDEAFQKELNHYLNTYVGRETPLYFAENMTEYC-----GGAKIYLKREDLNHTGAHKINNTIGQA 99
[Close]
BLAST of CX291092 vs. ExPASy Swiss-Prot
Match: TRPB_BACAH (Tryptophan synthase beta chain OS=Bacillus thuringiensis (strain Al Hakam) GN=trpB PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.024e-22
Identity = 53/85 (62.35%), Postives = 62/85 (72.94%), Query Frame = 3 
Query:  243 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 497
            VPETLM ++ ELE A  +  +D  FQ+EL+  L  YVGRETPLYFAE +TE+      GG  IYLKREDLNHTGAHKINN +GQA
Sbjct:   20 VPETLMQSVLELEEAYKEAMEDEAFQKELNHYLNTYVGRETPLYFAENMTEYC-----GGAKIYLKREDLNHTGAHKINNTIGQA 99
[Close]
BLAST of CX291092 vs. ExPASy Swiss-Prot
Match: TRPB_BACC4 (Tryptophan synthase beta chain OS=Bacillus cereus (strain B4264) GN=trpB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 5.157e-22
Identity = 53/85 (62.35%), Postives = 62/85 (72.94%), Query Frame = 3 
Query:  243 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 497
            VPETLM ++ ELE A  +   D  FQ+EL+  L+ YVGRETPLYFAE LT++      GG  IYLKREDLNHTGAHKINN +GQA
Sbjct:   20 VPETLMQSVLELEEAYKEAMQDEAFQKELNHYLKTYVGRETPLYFAENLTKYC-----GGAKIYLKREDLNHTGAHKINNTIGQA 99
[Close]
BLAST of CX291092 vs. ExPASy Swiss-Prot
Match: TRPB_BACC2 (Tryptophan synthase beta chain OS=Bacillus cereus (strain G9842) GN=trpB PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 8.797e-22
Identity = 52/85 (61.18%), Postives = 62/85 (72.94%), Query Frame = 3 
Query:  243 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 497
            VPETLM ++ ELE A  +   D  FQ+EL+  L+ YVGRETPLYFAE +T++      GG  IYLKREDLNHTGAHKINN +GQA
Sbjct:   20 VPETLMQSVLELEEAYKEAMQDEAFQKELNHYLKTYVGRETPLYFAENMTKYC-----GGAKIYLKREDLNHTGAHKINNTIGQA 99
The following BLAST results are available for this feature:
BLAST of CX291092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 324
Match NameE-valueIdentityDescription
TRPB_BACAN1.773e-2262.35Tryptophan synthase beta chain OS=Bacillus anthrac... [more]
TRPB_BACAC1.773e-2262.35Tryptophan synthase beta chain OS=Bacillus anthrac... [more]
TRPB_BACAA1.773e-2262.35Tryptophan synthase beta chain OS=Bacillus anthrac... [more]
TRPB_LACLS2.315e-2265.48Tryptophan synthase beta chain OS=Lactococcus lact... [more]
TRPB_LACLM2.315e-2265.48Tryptophan synthase beta chain OS=Lactococcus lact... [more]
TRPB1_AQUAE2.315e-2263.10Tryptophan synthase beta chain 1 OS=Aquifex aeolic... [more]
TRPB_BACC33.024e-2262.35Tryptophan synthase beta chain OS=Bacillus cereus ... [more]
TRPB_BACAH3.024e-2262.35Tryptophan synthase beta chain OS=Bacillus thuring... [more]
TRPB_BACC45.157e-2262.35Tryptophan synthase beta chain OS=Bacillus cereus ... [more]
TRPB_BACC28.797e-2261.18Tryptophan synthase beta chain OS=Bacillus cereus ... [more]

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Properties
Property NameValue
Genbank descriptionC03004A03SK OF2 Citrus clementina cDNA clone C03004A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291092 ID=CX291092; Name=CX291092; organism=Citrus clementina; type=EST; length=497bp
TCGCCACAGGTTCAAGCTCCTGTTGCAAACTCGCAAAGCCCTGCGCTTTC
ACGACATCGAATTCCTCGCAGTCGCCCTTCAAGTTGAAGAAATTTACAGC
CAGCCCAGCCAAATCGACGTCCATTCGCTGTACCATTGCGAGAGACCCGG
TCGTTCCCATGGAGGCCAAGAAGCAGTCCGACCCTGCCCCGTGGCAGAGA
CCTGATGTGTTTGGCCGGTTCGGTAGGTTCGGCGGGAAGTTCGTCCCTGA
GACGCTAATGTACGCGCTTTCTGAGCTGGAATCCGCACTTCATAAACTCG
CCGACGACCGAGATTTTCAGGAGGAACTTTCGGGGATTTTGAGAGACTAT
GTCGGCAGGGAGACTCCGCTTTATTTTGCTGAGCGGCTTACGGAGCACTA
CAGGCGGCCTAACGGGGGAGGGCCTCACATATACCTCAAGAGGGAGGACC
TCAACCACACTGGGGCCCACAAGATCAACAATGCTGTTGGCCAAGCT
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