CX291249
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_RHOPS (50S ribosomal protein L3 OS=Rhodopseudomonas palustris (strain BisB5) GN=rplC PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 4.858e-27 Identity = 61/160 (38.12%), Postives = 87/160 (54.37%), Query Frame = 3 Query: 3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 + +L +G G +K +M K E G F V KRK+ EF V+EDAL+P+G + HF+ GQ+VD+ RW F G+ A+HG S+SHRS+GSTG R PGK F + T N+ V + D R L+ V G VPG+ G ++ ++ Sbjct: 46 YVALQLGSGARKTVYMPKAERGQFAVAKVEPKRKVAEFRVSEDALIPVGAEIQADHFVVGQFVDVTGTSTGKGFAGGMKRWNFGGLRATHGVSVSHRSIGSTGGRQDPGKTFKNKKMPGHMGVDRITTLNLRVVQTDVERGLILVEGAVPGSKGGWISVR 205
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_RHOPB (50S ribosomal protein L3 OS=Rhodopseudomonas palustris (strain BisB18) GN=rplC PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 4.858e-27 Identity = 60/160 (37.50%), Postives = 88/160 (55.00%), Query Frame = 3 Query: 3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 + ++ +G G +K ++ K E G F V KRK+ EF V+EDAL+P+G + HF+ GQ+VD+ RW F G+ A+HG S+SHRS+GSTG R PGK F + T N+ V + D AR L+ V G VPG+ G ++ ++ Sbjct: 46 YVAMQLGSGTRKTVYLPKAERGQFAVAKVEPKRKVAEFRVSEDALIPVGAEIQADHFVVGQFVDVTGTSVGKGFAGGIKRWNFGGLRATHGVSVSHRSIGSTGGRQDPGKTFKNKKMPGHMGVDRITTLNLRVVQTDVARGLILVEGAVPGSKGGWIAVR 205
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_OLICO (50S ribosomal protein L3 OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rplC PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 4.858e-27 Identity = 60/160 (37.50%), Postives = 87/160 (54.37%), Query Frame = 3 Query: 3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 + +L +G G +K +M K E G F V KRK+ EF V+EDA++P+G + HF+ GQ+VD+ RW F G+ A+HG S+SHRS+GSTG R PGK F + T N+ V + D R L+ V G VPG+ G ++ ++ Sbjct: 46 YTALQLGAGARKSVYMPKAERGQFAVAKVEPKRKVAEFRVSEDAIIPVGAEIQADHFVVGQFVDVTGTSIGKGYAGGMKRWNFGGLRATHGVSVSHRSIGSTGGRQDPGKTFKNKKMPGHMGVDRITTLNLRVVQTDVERGLLLVEGAVPGSKGGWITVR 205
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_MARMM (50S ribosomal protein L3 OS=Maricaulis maris (strain MCS10) GN=rplC PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 4.858e-27 Identity = 64/160 (40.00%), Postives = 89/160 (55.62%), Query Frame = 3 Query: 3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 + +L +G G+ K K K GHF V KRKL EF V EDAL+ +G+ L HF+PGQ VD+ R GF G+ A+HG S+SHRS GSTGQ PGKVF + T +N+ V ++D R ++ V+G VPG++G +V ++ Sbjct: 51 YVALQLGAGEAKAKRTPKAMRGHFAKAKVAPKRKLVEFRVAEDALIEVGSELTADHFVPGQKVDVAGISIGKGFAGAMKRHGFGGLRATHGVSISHRSHGSTGQCQDPGKVFKGKKMAGHMGAVRVTTQNIEVVRVDVERGIVLVKGAVPGSAGGWVELR 210
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_GLUDA (50S ribosomal protein L3 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rplC PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 6.344e-27 Identity = 62/160 (38.75%), Postives = 84/160 (52.50%), Query Frame = 3 Query: 3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 + ++ +G G K K+++KP GHF V K+KL EF V +DA+L G +L HF+ GQ VD+ RW F G+ ASHG S+SHRS GSTG R PGK F + T N+ V +D +NL+ VRG VPG V ++ Sbjct: 46 YTAVQLGFGNAKVKNVSKPNRGHFARVKVEPKKKLAEFRVADDAVLEAGATLSAAHFVVGQKVDVTSTSKGKGFAGAMKRWNFAGLEASHGVSISHRSHGSTGNRQDPGKTFKNKKMAGHLGSERVTTLNLEVAAVDAEKNLLMVRGSVPGGKNELVLVR 205
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_SPHAL (50S ribosomal protein L3 OS=Sphingopyxis alaskensis GN=rplC PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 8.286e-27 Identity = 60/160 (37.50%), Postives = 87/160 (54.37%), Query Frame = 3 Query: 3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 + ++ +G G K K++ KP+ G + V K KL EF V +DA L +G L HF+ GQ VDI RWGF GM A+HG S+SHR+ GSTG R PG+VF RT +N+ + + D R L++V+G VPG+ G ++ ++ Sbjct: 46 YVAVQLGAGTAKAKNVAKPQRGAYGKAEVEPKAKLVEFRVADDATLDVGAELSADHFVAGQMVDIQGVTQGKGFAGAMKRWGFGGMRATHGVSISHRAHGSTGNRQDPGRVFKNKKMAGHMGARNRTQQNLEIVRTDAERGLLFVKGSVPGSKGGWLLVR 205
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_NITWN (50S ribosomal protein L3 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rplC PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 8.286e-27 Identity = 60/160 (37.50%), Postives = 87/160 (54.37%), Query Frame = 3 Query: 3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 + +L +G G +K +M K E G F V KRK+ EF V+ED+L+P+G + HF+ GQ+VD+ RW F G+ A+HG S+SHRS+GSTG R PGK F + T N+ V + D R L+ V G VPG+ G ++ ++ Sbjct: 46 YVALQLGSGARKTVYMPKAERGQFAVAKVAPKRKVAEFRVSEDSLIPVGAEIQADHFVVGQFVDVTGTSVGKGYAGGMKRWNFGGLRATHGVSISHRSIGSTGGRQDPGKTFKNKKMPGHMGVDRITTLNLRVVQTDVERGLILVEGAVPGSKGGWIAVR 205
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_BRASO (50S ribosomal protein L3 OS=Bradyrhizobium sp. (strain ORS278) GN=rplC PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 1.082e-26 Identity = 60/160 (37.50%), Postives = 87/160 (54.37%), Query Frame = 3 Query: 3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 + +L +G G +K +M K E G F V KRKL EF V+ED+L+P+G + HF+ GQ+VD+ RW F G+ A+HG S+SHRS+GSTG R PGK + + T N+ V + D R L+ V G VPG+ G ++ ++ Sbjct: 46 YVALQLGSGSRKTVYMPKAERGQFAVAKVEPKRKLAEFRVSEDSLIPVGAEIQADHFVVGQFVDVTGTSVGKGFAGGMKRWNFGGLRATHGVSISHRSIGSTGGRQDPGKTWKNKKMPGHMGVDRITTLNLRVVQTDVERGLILVEGAVPGSKGGWISVR 205
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_SILPO (50S ribosomal protein L3 OS=Silicibacter pomeroyi GN=rplC PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 2.411e-26 Identity = 63/160 (39.38%), Postives = 87/160 (54.37%), Query Frame = 3 Query: 3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 + ++ +G G K K ++K GHF AQ V KRKL EF V+EDAL+ +G + HF+ GQ VD+ R F G+ ASHG S+SHRS GSTGQ PG+VF + T +N+ V K D R L++++G VPG +V +K Sbjct: 46 YTAVQLGAGTPKIKRVSKAMRGHFAAQKVEPKRKLAEFRVSEDALIEVGAEISAEHFLTGQKVDVSGTSIGKGFAGAMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGRVFKGKKMAGHMGAARVTTQNLEVVKTDAERGLVFIKGAVPGPKSGWVTVK 205
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_NITHX (50S ribosomal protein L3 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rplC PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 2.411e-26 Identity = 59/160 (36.88%), Postives = 87/160 (54.37%), Query Frame = 3 Query: 3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 + +L +G G +K ++ K E G F V KRK+ EF V+ED+L+P+G + HF+ GQ+VD+ RW F G+ A+HG S+SHRS+GSTG R PGK F + T N+ V + D R L+ V G VPG+ G ++ ++ Sbjct: 46 YVALQLGSGARKTVYLPKAERGQFAVAKVEPKRKVAEFRVSEDSLIPVGAEIQADHFVVGQFVDVTGTSVGKGFAGGMKRWNFGGLRATHGVSVSHRSIGSTGGRQDPGKTFKNKKMPGHMGVDRVTTLNLRVVQTDVERGLILVEGAVPGSKGGWIAVR 205 The following BLAST results are available for this feature:
BLAST of CX291249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX291249 ID=CX291249; Name=CX291249; organism=Citrus clementina; type=EST; length=484bpback to top |