CX291249

Overview
NameCX291249
Unique NameCX291249
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length484
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_RHOPS (50S ribosomal protein L3 OS=Rhodopseudomonas palustris (strain BisB5) GN=rplC PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 4.858e-27
Identity = 61/160 (38.12%), Postives = 87/160 (54.37%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            + +L +G G +K  +M K E G F    V  KRK+ EF V+EDAL+P+G  +   HF+ GQ+VD+              RW F G+ A+HG S+SHRS+GSTG R  PGK F            + T  N+ V + D  R L+ V G VPG+ G ++ ++
Sbjct:   46 YVALQLGSGARKTVYMPKAERGQFAVAKVEPKRKVAEFRVSEDALIPVGAEIQADHFVVGQFVDVTGTSTGKGFAGGMKRWNFGGLRATHGVSVSHRSIGSTGGRQDPGKTFKNKKMPGHMGVDRITTLNLRVVQTDVERGLILVEGAVPGSKGGWISVR 205          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_RHOPB (50S ribosomal protein L3 OS=Rhodopseudomonas palustris (strain BisB18) GN=rplC PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 4.858e-27
Identity = 60/160 (37.50%), Postives = 88/160 (55.00%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            + ++ +G G +K  ++ K E G F    V  KRK+ EF V+EDAL+P+G  +   HF+ GQ+VD+              RW F G+ A+HG S+SHRS+GSTG R  PGK F            + T  N+ V + D AR L+ V G VPG+ G ++ ++
Sbjct:   46 YVAMQLGSGTRKTVYLPKAERGQFAVAKVEPKRKVAEFRVSEDALIPVGAEIQADHFVVGQFVDVTGTSVGKGFAGGIKRWNFGGLRATHGVSVSHRSIGSTGGRQDPGKTFKNKKMPGHMGVDRITTLNLRVVQTDVARGLILVEGAVPGSKGGWIAVR 205          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_OLICO (50S ribosomal protein L3 OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rplC PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 4.858e-27
Identity = 60/160 (37.50%), Postives = 87/160 (54.37%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            + +L +G G +K  +M K E G F    V  KRK+ EF V+EDA++P+G  +   HF+ GQ+VD+              RW F G+ A+HG S+SHRS+GSTG R  PGK F            + T  N+ V + D  R L+ V G VPG+ G ++ ++
Sbjct:   46 YTALQLGAGARKSVYMPKAERGQFAVAKVEPKRKVAEFRVSEDAIIPVGAEIQADHFVVGQFVDVTGTSIGKGYAGGMKRWNFGGLRATHGVSVSHRSIGSTGGRQDPGKTFKNKKMPGHMGVDRITTLNLRVVQTDVERGLLLVEGAVPGSKGGWITVR 205          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_MARMM (50S ribosomal protein L3 OS=Maricaulis maris (strain MCS10) GN=rplC PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 4.858e-27
Identity = 64/160 (40.00%), Postives = 89/160 (55.62%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            + +L +G G+ K K   K   GHF    V  KRKL EF V EDAL+ +G+ L   HF+PGQ VD+              R GF G+ A+HG S+SHRS GSTGQ   PGKVF            + T +N+ V ++D  R ++ V+G VPG++G +V ++
Sbjct:   51 YVALQLGAGEAKAKRTPKAMRGHFAKAKVAPKRKLVEFRVAEDALIEVGSELTADHFVPGQKVDVAGISIGKGFAGAMKRHGFGGLRATHGVSISHRSHGSTGQCQDPGKVFKGKKMAGHMGAVRVTTQNIEVVRVDVERGIVLVKGAVPGSAGGWVELR 210          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_GLUDA (50S ribosomal protein L3 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rplC PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 6.344e-27
Identity = 62/160 (38.75%), Postives = 84/160 (52.50%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            + ++ +G G  K K+++KP  GHF    V  K+KL EF V +DA+L  G +L   HF+ GQ VD+              RW F G+ ASHG S+SHRS GSTG R  PGK F            + T  N+ V  +D  +NL+ VRG VPG     V ++
Sbjct:   46 YTAVQLGFGNAKVKNVSKPNRGHFARVKVEPKKKLAEFRVADDAVLEAGATLSAAHFVVGQKVDVTSTSKGKGFAGAMKRWNFAGLEASHGVSISHRSHGSTGNRQDPGKTFKNKKMAGHLGSERVTTLNLEVAAVDAEKNLLMVRGSVPGGKNELVLVR 205          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_SPHAL (50S ribosomal protein L3 OS=Sphingopyxis alaskensis GN=rplC PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 8.286e-27
Identity = 60/160 (37.50%), Postives = 87/160 (54.37%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            + ++ +G G  K K++ KP+ G +    V  K KL EF V +DA L +G  L   HF+ GQ VDI              RWGF GM A+HG S+SHR+ GSTG R  PG+VF             RT +N+ + + D  R L++V+G VPG+ G ++ ++
Sbjct:   46 YVAVQLGAGTAKAKNVAKPQRGAYGKAEVEPKAKLVEFRVADDATLDVGAELSADHFVAGQMVDIQGVTQGKGFAGAMKRWGFGGMRATHGVSISHRAHGSTGNRQDPGRVFKNKKMAGHMGARNRTQQNLEIVRTDAERGLLFVKGSVPGSKGGWLLVR 205          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_NITWN (50S ribosomal protein L3 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rplC PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 8.286e-27
Identity = 60/160 (37.50%), Postives = 87/160 (54.37%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            + +L +G G +K  +M K E G F    V  KRK+ EF V+ED+L+P+G  +   HF+ GQ+VD+              RW F G+ A+HG S+SHRS+GSTG R  PGK F            + T  N+ V + D  R L+ V G VPG+ G ++ ++
Sbjct:   46 YVALQLGSGARKTVYMPKAERGQFAVAKVAPKRKVAEFRVSEDSLIPVGAEIQADHFVVGQFVDVTGTSVGKGYAGGMKRWNFGGLRATHGVSISHRSIGSTGGRQDPGKTFKNKKMPGHMGVDRITTLNLRVVQTDVERGLILVEGAVPGSKGGWIAVR 205          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_BRASO (50S ribosomal protein L3 OS=Bradyrhizobium sp. (strain ORS278) GN=rplC PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.082e-26
Identity = 60/160 (37.50%), Postives = 87/160 (54.37%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            + +L +G G +K  +M K E G F    V  KRKL EF V+ED+L+P+G  +   HF+ GQ+VD+              RW F G+ A+HG S+SHRS+GSTG R  PGK +            + T  N+ V + D  R L+ V G VPG+ G ++ ++
Sbjct:   46 YVALQLGSGSRKTVYMPKAERGQFAVAKVEPKRKLAEFRVSEDSLIPVGAEIQADHFVVGQFVDVTGTSVGKGFAGGMKRWNFGGLRATHGVSISHRSIGSTGGRQDPGKTWKNKKMPGHMGVDRITTLNLRVVQTDVERGLILVEGAVPGSKGGWISVR 205          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_SILPO (50S ribosomal protein L3 OS=Silicibacter pomeroyi GN=rplC PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.411e-26
Identity = 63/160 (39.38%), Postives = 87/160 (54.37%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            + ++ +G G  K K ++K   GHF AQ V  KRKL EF V+EDAL+ +G  +   HF+ GQ VD+              R  F G+ ASHG S+SHRS GSTGQ   PG+VF            + T +N+ V K D  R L++++G VPG    +V +K
Sbjct:   46 YTAVQLGAGTPKIKRVSKAMRGHFAAQKVEPKRKLAEFRVSEDALIEVGAEISAEHFLTGQKVDVSGTSIGKGFAGAMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGRVFKGKKMAGHMGAARVTTQNLEVVKTDAERGLVFIKGAVPGPKSGWVTVK 205          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_NITHX (50S ribosomal protein L3 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rplC PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.411e-26
Identity = 59/160 (36.88%), Postives = 87/160 (54.37%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            + +L +G G +K  ++ K E G F    V  KRK+ EF V+ED+L+P+G  +   HF+ GQ+VD+              RW F G+ A+HG S+SHRS+GSTG R  PGK F            + T  N+ V + D  R L+ V G VPG+ G ++ ++
Sbjct:   46 YVALQLGSGARKTVYLPKAERGQFAVAKVEPKRKVAEFRVSEDSLIPVGAEIQADHFVVGQFVDVTGTSVGKGFAGGMKRWNFGGLRATHGVSVSHRSIGSTGGRQDPGKTFKNKKMPGHMGVDRVTTLNLRVVQTDVERGLILVEGAVPGSKGGWIAVR 205          
The following BLAST results are available for this feature:
BLAST of CX291249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL3_RHOPS4.858e-2738.1350S ribosomal protein L3 OS=Rhodopseudomonas palus... [more]
RL3_RHOPB4.858e-2737.5050S ribosomal protein L3 OS=Rhodopseudomonas palus... [more]
RL3_OLICO4.858e-2737.5050S ribosomal protein L3 OS=Oligotropha carboxidov... [more]
RL3_MARMM4.858e-2740.0050S ribosomal protein L3 OS=Maricaulis maris (stra... [more]
RL3_GLUDA6.344e-2738.7550S ribosomal protein L3 OS=Gluconacetobacter diaz... [more]
RL3_SPHAL8.286e-2737.5050S ribosomal protein L3 OS=Sphingopyxis alaskensi... [more]
RL3_NITWN8.286e-2737.5050S ribosomal protein L3 OS=Nitrobacter winogradsk... [more]
RL3_BRASO1.082e-2637.5050S ribosomal protein L3 OS=Bradyrhizobium sp. (st... [more]
RL3_SILPO2.411e-2639.3850S ribosomal protein L3 OS=Silicibacter pomeroyi ... [more]
RL3_NITHX2.411e-2636.8850S ribosomal protein L3 OS=Nitrobacter hamburgens... [more]

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Properties
Property NameValue
Genbank descriptionC03005G12SK OF2 Citrus clementina cDNA clone C03005G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291249 ID=CX291249; Name=CX291249; organism=Citrus clementina; type=EST; length=484bp
GTTTCTTTTCCTTGCACGTTGGATGCGGGCAGAAGAAGGATAAACATATG
ACAAAACCTGAAGTGGGTCATTTTAGAGCTCAAGGTGTTCCACTGAAGAG
GAAATTGCGGGAGTTTCCTGTCACAGAAGATGCACTTCTCCCCATTGGCA
CATCACTTGGAGTTCGTCATTTTATTCCTGGCCAATACGTTGATATCACG
GGTACCACGAAAGGGAAAGGTTTTCAGGGTGGAATGAAAAGATGGGGATT
TAAAGGAATGCCAGCTTCTCATGGTGCATCATTGTCGCATCGAAGTCTTG
GTTCTACCGGTCAGAGGGATGCTCCTGGCAAGGTATTTAAGGGCAAAAAA
ATGCCTGGGCGAATGGGTGGAAAGCAGAGAACCGTAAAAAATGTATGGGT
ATACAAAATAGATCCAGCAAGGAATTTGATGTGGGTGAGAGGCCAGGTGC
CAGGTGCTTCAGGAAACTTTGTATTTATAAAGGA
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