CX291249
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_METSB (50S ribosomal protein L3 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=rplC PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 5.938e-25 Identity = 61/160 (38.12%), Postives = 85/160 (53.12%), Query Frame = 3 Query: 3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 + +L +G G+ K K+++K E G F V K KL EF V E LLP+G + HF+ GQ+VD+ RW F G+ A+HG SLSHRS GSTG R PGK F + T N+ V ++D R L+ V G VPG +G ++ ++ Sbjct: 46 YTALQLGIGRAKVKNVSKAERGRFAIAEVEPKLKLAEFRVEESDLLPVGAEITADHFVVGQFVDVTGTSIGKGFAGPMKRWNFGGLRATHGVSLSHRSHGSTGGRQDPGKTFKNKKMAGHMGAERVTTLNLKVVQLDIERGLILVEGAVPGVAGGWIQVR 205
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_RHOS4 (50S ribosomal protein L3 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rplC PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 7.755e-25 Identity = 61/160 (38.12%), Postives = 84/160 (52.50%), Query Frame = 3 Query: 3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 + ++ +G G K K ++ + GHF V KRK+ EF VT D L+ +G + H+ GQ+VDI R F G+ ASHG S+SHRS GSTGQ PGKVF + T +N+ V + D R L+ V+G VPG+ G +V IK Sbjct: 46 YTAVQLGAGAAKAKRVSAAQRGHFAKANVEPKRKIAEFRVTPDCLIDVGAEITADHYFAGQFVDIAGTSIGKGFAGAMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKGKKMAGHMGAARVTTQNLQVVRTDSDRGLIMVKGAVPGSKGGWVTIK 205
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_PARDP (50S ribosomal protein L3 OS=Paracoccus denitrificans (strain Pd 1222) GN=rplC PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 7.755e-25 Identity = 63/160 (39.38%), Postives = 83/160 (51.88%), Query Frame = 3 Query: 3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 + +L +G G+ K K T GHF V KRK+ EF V+ + L+ +G + H+ GQYVDI R F G+ ASHG S+SHRS GSTGQ PGKVF + T +N+ V K D R L+ V+G VPG+ G +V IK Sbjct: 47 YVALQLGAGEAKAKRTTAALRGHFAKANVAPKRKIAEFRVSPENLVEVGEEIVADHYFEGQYVDIAGTSIGKGFAGAMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKGKKMAGHLGAVRVTTQNLQVVKTDAERGLIMVKGSVPGSKGGWVTIK 206
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_BEII9 (50S ribosomal protein L3 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplC PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 7.755e-25 Identity = 59/160 (36.88%), Postives = 85/160 (53.12%), Query Frame = 3 Query: 3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 + ++ +G G+ K K+++K E G F V K KL EF V + LLPIG + HF+ GQ+VD+ RW F G+ A+HG S+SHRS GSTG R PGK F + T N+ V + D R L+ V G VPG +G +++++ Sbjct: 46 YVAVQLGIGRAKVKNVSKAERGRFAVAKVEPKLKLAEFRVDDATLLPIGAEITADHFVVGQFVDVTGTSTGKGFAGAMKRWNFGGLRATHGVSISHRSHGSTGGRQDPGKTFKNKKMAGHLGTERVTTLNLRVVQTDVERGLILVEGAVPGTAGGWIYVR 205
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_RICM5 (50S ribosomal protein L3 OS=Rickettsia massiliae (strain Mtu5) GN=rplC PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 1.013e-24 Identity = 59/158 (37.34%), Postives = 86/158 (54.43%), Query Frame = 3 Query: 9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 +L +G KK +TKP F + K KL+EF ++E+ + I TSL V HF GQ+VDI R F+G+ ASHG S+SHRS GSTGQR PGKVF Q T++N+ ++ +D R L+ ++G +PG +++ +K Sbjct: 48 ALVIGVKDKKISRVTKPMKQVFANAKISPKTKLKEFRISEEHFIDIATSLEVDHFTAGQFVDITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFRGKKMAGHMGCNQVTIQNLKIFAVDKERKLIMIQGSIPGHKNSYLSVK 205
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_RHIEC (50S ribosomal protein L3 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rplC PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 1.323e-24 Identity = 62/160 (38.75%), Postives = 85/160 (53.12%), Query Frame = 3 Query: 3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 + ++ +G GQ K K+ +K G+F V K KL EF V+ED LL IGT L HF GQ VD+ R GF G+ A+HG S+SHRS GSTG R PGKVF + T +N+ V D R L+ ++G VPG+ G ++ ++ Sbjct: 46 YTAVQLGAGQAKVKNTSKAMRGNFAVANVEPKAKLAEFRVSEDNLLEIGTELKADHFAAGQLVDVTGTTIGKGFAGAMKRHGFGGLRATHGVSVSHRSHGSTGSRQDPGKVFKNKKMAGHMGQTRVTTQNLEVVSTDEDRGLILIKGAVPGSKGAWIIVR 205
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_RHIE6 (50S ribosomal protein L3 OS=Rhizobium etli (strain CIAT 652) GN=rplC PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 1.323e-24 Identity = 62/160 (38.75%), Postives = 85/160 (53.12%), Query Frame = 3 Query: 3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 + ++ +G GQ K K+ +K G+F V K KL EF V+ED LL IGT L HF GQ VD+ R GF G+ A+HG S+SHRS GSTG R PGKVF + T +N+ V D R L+ ++G VPG+ G ++ ++ Sbjct: 46 YTAVQLGAGQAKVKNTSKAMRGNFAVANVEPKAKLAEFRVSEDNLLEIGTELKAGHFAAGQLVDVTGTTIGKGFAGAMKRHGFGGLRATHGVSVSHRSHGSTGSRQDPGKVFKNKKMAGHMGQTRVTTQNLEVVSTDEDRGLILIKGAVPGSKGAWIIVR 205
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_DINSH (50S ribosomal protein L3 OS=Dinoroseobacter shibae (strain DFL 12) GN=rplC PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 1.728e-24 Identity = 61/160 (38.12%), Postives = 83/160 (51.88%), Query Frame = 3 Query: 3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 + ++ +G G K K TK GHF A V KRK+ EF V + L+ +G + H+ GQYVD+ R F G+ ASHG S+SHRS GSTGQ PGKVF + T +N+ V + D R L+ ++G VPG+ G +V IK Sbjct: 46 YSAVQLGAGTAKAKRTTKAMRGHFAAASVEPKRKVAEFRVAPENLINVGEEITADHYFEGQYVDVSGTSIGKGFAGAMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKGKKMAGHMGAARVTTQNLQVVRTDADRGLIMIKGAVPGSKGGWVTIK 205
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_RICCK (50S ribosomal protein L3 OS=Rickettsia canadensis (strain McKiel) GN=rplC PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 2.947e-24 Identity = 58/158 (36.71%), Postives = 86/158 (54.43%), Query Frame = 3 Query: 9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 +L +G KK +TKP F + K KL+EF ++E+ + + SL V HF+ GQ+VDI R F+G+ ASHG S+SHRS GSTGQR PGKVF Q T++N+ ++ +D R L+ ++G +PG +++ IK Sbjct: 48 ALVIGVKDKKISRVTKPMKQVFANAKISPKTKLKEFRISEENFIDVAASLEVDHFMAGQFVDITAITIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGCNQVTIQNLKIFAVDKDRKLIMIQGSIPGHKNSYLSIK 205
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_RHIL3 (50S ribosomal protein L3 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=rplC PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 2.947e-24 Identity = 60/160 (37.50%), Postives = 85/160 (53.12%), Query Frame = 3 Query: 3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 + ++ +G GQ K K+ +K G+F V K KL EF V+ED LL +GT + HF GQ VD+ R GF G+ A+HG S+SHRS GSTG R PGKVF + T +N+ V D R L+ ++G VPG+ G ++ ++ Sbjct: 46 YTAVQLGAGQAKVKNTSKAMRGNFAIANVEPKAKLTEFRVSEDQLLEVGTEIKAGHFAAGQLVDVTGTTIGKGFAGAMKRHGFGGLRATHGVSVSHRSHGSTGSRQDPGKVFKNKKMAGHMGQTRVTTQNLEVVSTDEDRGLILIKGAVPGSKGAWIIVR 205 The following BLAST results are available for this feature:
BLAST of CX291249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX291249 ID=CX291249; Name=CX291249; organism=Citrus clementina; type=EST; length=484bpback to top |