CX291249

Overview
NameCX291249
Unique NameCX291249
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length484
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_METSB (50S ribosomal protein L3 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=rplC PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 5.938e-25
Identity = 61/160 (38.12%), Postives = 85/160 (53.12%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            + +L +G G+ K K+++K E G F    V  K KL EF V E  LLP+G  +   HF+ GQ+VD+              RW F G+ A+HG SLSHRS GSTG R  PGK F            + T  N+ V ++D  R L+ V G VPG +G ++ ++
Sbjct:   46 YTALQLGIGRAKVKNVSKAERGRFAIAEVEPKLKLAEFRVEESDLLPVGAEITADHFVVGQFVDVTGTSIGKGFAGPMKRWNFGGLRATHGVSLSHRSHGSTGGRQDPGKTFKNKKMAGHMGAERVTTLNLKVVQLDIERGLILVEGAVPGVAGGWIQVR 205          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_RHOS4 (50S ribosomal protein L3 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rplC PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 7.755e-25
Identity = 61/160 (38.12%), Postives = 84/160 (52.50%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            + ++ +G G  K K ++  + GHF    V  KRK+ EF VT D L+ +G  +   H+  GQ+VDI              R  F G+ ASHG S+SHRS GSTGQ   PGKVF            + T +N+ V + D  R L+ V+G VPG+ G +V IK
Sbjct:   46 YTAVQLGAGAAKAKRVSAAQRGHFAKANVEPKRKIAEFRVTPDCLIDVGAEITADHYFAGQFVDIAGTSIGKGFAGAMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKGKKMAGHMGAARVTTQNLQVVRTDSDRGLIMVKGAVPGSKGGWVTIK 205          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_PARDP (50S ribosomal protein L3 OS=Paracoccus denitrificans (strain Pd 1222) GN=rplC PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 7.755e-25
Identity = 63/160 (39.38%), Postives = 83/160 (51.88%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            + +L +G G+ K K  T    GHF    V  KRK+ EF V+ + L+ +G  +   H+  GQYVDI              R  F G+ ASHG S+SHRS GSTGQ   PGKVF            + T +N+ V K D  R L+ V+G VPG+ G +V IK
Sbjct:   47 YVALQLGAGEAKAKRTTAALRGHFAKANVAPKRKIAEFRVSPENLVEVGEEIVADHYFEGQYVDIAGTSIGKGFAGAMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKGKKMAGHLGAVRVTTQNLQVVKTDAERGLIMVKGSVPGSKGGWVTIK 206          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_BEII9 (50S ribosomal protein L3 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplC PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 7.755e-25
Identity = 59/160 (36.88%), Postives = 85/160 (53.12%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            + ++ +G G+ K K+++K E G F    V  K KL EF V +  LLPIG  +   HF+ GQ+VD+              RW F G+ A+HG S+SHRS GSTG R  PGK F            + T  N+ V + D  R L+ V G VPG +G +++++
Sbjct:   46 YVAVQLGIGRAKVKNVSKAERGRFAVAKVEPKLKLAEFRVDDATLLPIGAEITADHFVVGQFVDVTGTSTGKGFAGAMKRWNFGGLRATHGVSISHRSHGSTGGRQDPGKTFKNKKMAGHLGTERVTTLNLRVVQTDVERGLILVEGAVPGTAGGWIYVR 205          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_RICM5 (50S ribosomal protein L3 OS=Rickettsia massiliae (strain Mtu5) GN=rplC PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.013e-24
Identity = 59/158 (37.34%), Postives = 86/158 (54.43%), Query Frame = 3
Query:    9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            +L +G   KK   +TKP    F    +  K KL+EF ++E+  + I TSL V HF  GQ+VDI              R  F+G+ ASHG S+SHRS GSTGQR  PGKVF            Q T++N+ ++ +D  R L+ ++G +PG   +++ +K
Sbjct:   48 ALVIGVKDKKISRVTKPMKQVFANAKISPKTKLKEFRISEEHFIDIATSLEVDHFTAGQFVDITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFRGKKMAGHMGCNQVTIQNLKIFAVDKERKLIMIQGSIPGHKNSYLSVK 205          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_RHIEC (50S ribosomal protein L3 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rplC PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.323e-24
Identity = 62/160 (38.75%), Postives = 85/160 (53.12%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            + ++ +G GQ K K+ +K   G+F    V  K KL EF V+ED LL IGT L   HF  GQ VD+              R GF G+ A+HG S+SHRS GSTG R  PGKVF            + T +N+ V   D  R L+ ++G VPG+ G ++ ++
Sbjct:   46 YTAVQLGAGQAKVKNTSKAMRGNFAVANVEPKAKLAEFRVSEDNLLEIGTELKADHFAAGQLVDVTGTTIGKGFAGAMKRHGFGGLRATHGVSVSHRSHGSTGSRQDPGKVFKNKKMAGHMGQTRVTTQNLEVVSTDEDRGLILIKGAVPGSKGAWIIVR 205          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_RHIE6 (50S ribosomal protein L3 OS=Rhizobium etli (strain CIAT 652) GN=rplC PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.323e-24
Identity = 62/160 (38.75%), Postives = 85/160 (53.12%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            + ++ +G GQ K K+ +K   G+F    V  K KL EF V+ED LL IGT L   HF  GQ VD+              R GF G+ A+HG S+SHRS GSTG R  PGKVF            + T +N+ V   D  R L+ ++G VPG+ G ++ ++
Sbjct:   46 YTAVQLGAGQAKVKNTSKAMRGNFAVANVEPKAKLAEFRVSEDNLLEIGTELKAGHFAAGQLVDVTGTTIGKGFAGAMKRHGFGGLRATHGVSVSHRSHGSTGSRQDPGKVFKNKKMAGHMGQTRVTTQNLEVVSTDEDRGLILIKGAVPGSKGAWIIVR 205          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_DINSH (50S ribosomal protein L3 OS=Dinoroseobacter shibae (strain DFL 12) GN=rplC PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.728e-24
Identity = 61/160 (38.12%), Postives = 83/160 (51.88%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            + ++ +G G  K K  TK   GHF A  V  KRK+ EF V  + L+ +G  +   H+  GQYVD+              R  F G+ ASHG S+SHRS GSTGQ   PGKVF            + T +N+ V + D  R L+ ++G VPG+ G +V IK
Sbjct:   46 YSAVQLGAGTAKAKRTTKAMRGHFAAASVEPKRKVAEFRVAPENLINVGEEITADHYFEGQYVDVSGTSIGKGFAGAMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKGKKMAGHMGAARVTTQNLQVVRTDADRGLIMIKGAVPGSKGGWVTIK 205          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_RICCK (50S ribosomal protein L3 OS=Rickettsia canadensis (strain McKiel) GN=rplC PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.947e-24
Identity = 58/158 (36.71%), Postives = 86/158 (54.43%), Query Frame = 3
Query:    9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            +L +G   KK   +TKP    F    +  K KL+EF ++E+  + +  SL V HF+ GQ+VDI              R  F+G+ ASHG S+SHRS GSTGQR  PGKVF            Q T++N+ ++ +D  R L+ ++G +PG   +++ IK
Sbjct:   48 ALVIGVKDKKISRVTKPMKQVFANAKISPKTKLKEFRISEENFIDVAASLEVDHFMAGQFVDITAITIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGCNQVTIQNLKIFAVDKDRKLIMIQGSIPGHKNSYLSIK 205          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_RHIL3 (50S ribosomal protein L3 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=rplC PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.947e-24
Identity = 60/160 (37.50%), Postives = 85/160 (53.12%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            + ++ +G GQ K K+ +K   G+F    V  K KL EF V+ED LL +GT +   HF  GQ VD+              R GF G+ A+HG S+SHRS GSTG R  PGKVF            + T +N+ V   D  R L+ ++G VPG+ G ++ ++
Sbjct:   46 YTAVQLGAGQAKVKNTSKAMRGNFAIANVEPKAKLTEFRVSEDQLLEVGTEIKAGHFAAGQLVDVTGTTIGKGFAGAMKRHGFGGLRATHGVSVSHRSHGSTGSRQDPGKVFKNKKMAGHMGQTRVTTQNLEVVSTDEDRGLILIKGAVPGSKGAWIIVR 205          
The following BLAST results are available for this feature:
BLAST of CX291249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL3_METSB5.938e-2538.1350S ribosomal protein L3 OS=Methylocella silvestri... [more]
RL3_RHOS47.755e-2538.1350S ribosomal protein L3 OS=Rhodobacter sphaeroide... [more]
RL3_PARDP7.755e-2539.3850S ribosomal protein L3 OS=Paracoccus denitrifica... [more]
RL3_BEII97.755e-2536.8850S ribosomal protein L3 OS=Beijerinckia indica su... [more]
RL3_RICM51.013e-2437.3450S ribosomal protein L3 OS=Rickettsia massiliae (... [more]
RL3_RHIEC1.323e-2438.7550S ribosomal protein L3 OS=Rhizobium etli (strain... [more]
RL3_RHIE61.323e-2438.7550S ribosomal protein L3 OS=Rhizobium etli (strain... [more]
RL3_DINSH1.728e-2438.1350S ribosomal protein L3 OS=Dinoroseobacter shibae... [more]
RL3_RICCK2.947e-2436.7150S ribosomal protein L3 OS=Rickettsia canadensis ... [more]
RL3_RHIL32.947e-2437.5050S ribosomal protein L3 OS=Rhizobium leguminosaru... [more]

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Properties
Property NameValue
Genbank descriptionC03005G12SK OF2 Citrus clementina cDNA clone C03005G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291249 ID=CX291249; Name=CX291249; organism=Citrus clementina; type=EST; length=484bp
GTTTCTTTTCCTTGCACGTTGGATGCGGGCAGAAGAAGGATAAACATATG
ACAAAACCTGAAGTGGGTCATTTTAGAGCTCAAGGTGTTCCACTGAAGAG
GAAATTGCGGGAGTTTCCTGTCACAGAAGATGCACTTCTCCCCATTGGCA
CATCACTTGGAGTTCGTCATTTTATTCCTGGCCAATACGTTGATATCACG
GGTACCACGAAAGGGAAAGGTTTTCAGGGTGGAATGAAAAGATGGGGATT
TAAAGGAATGCCAGCTTCTCATGGTGCATCATTGTCGCATCGAAGTCTTG
GTTCTACCGGTCAGAGGGATGCTCCTGGCAAGGTATTTAAGGGCAAAAAA
ATGCCTGGGCGAATGGGTGGAAAGCAGAGAACCGTAAAAAATGTATGGGT
ATACAAAATAGATCCAGCAAGGAATTTGATGTGGGTGAGAGGCCAGGTGC
CAGGTGCTTCAGGAAACTTTGTATTTATAAAGGA
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