CX291249
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_CLOPH (50S ribosomal protein L3 OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=rplC PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 1.241e-14 Identity = 50/160 (31.25%), Postives = 70/160 (43.75%), Query Frame = 3 Query: 3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 + ++ VG G ++ + KP+ GHF GV KR L+EF A +G + V F G +D R G P HG+ HR GS G PG+VF + TV+N+ V KID NL+ V+G VPG + +K Sbjct: 46 YAAVQVGFGDIRETLVNKPQKGHFAKAGVANKRFLKEFRFENAADYTVGQEIKVDIFTAGDKIDATGTSKGKGFQGAIKRHGLSRGPMGHGSKF-HRHAGSNGAATTPGRVFKGKHMPGQMGNVKVTVQNLEVVKIDVDNNLILVKGAVPGPKKAMIMLK 204
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_MYCPA (50S ribosomal protein L3 OS=Mycobacterium paratuberculosis GN=rplC PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 1.621e-14 Identity = 46/163 (28.22%), Postives = 73/163 (44.79%), Query Frame = 3 Query: 3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTED---ALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 + ++ + G+ + + KP G + A G+ +R L E + A +G L F G YVD+ R GF+G ASHGA HR GS G P +VF + TV+N+ V+K+D ++ ++G VPG +G V ++ Sbjct: 47 YSAVQLAYGEISPRKVNKPVTGQYAAAGINPRRFLAELRLDNPDAAAEYQVGQELTAEIFTDGSYVDVTGTSKGKGFAGTMKRHGFRGQGASHGAQAVHRRPGSIGGCATPARVFKGTRMAGRMGNDRVTVQNLLVHKVDTENGVLLIKGAVPGRTGGLVMVR 209
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_MYCA1 (50S ribosomal protein L3 OS=Mycobacterium avium (strain 104) GN=rplC PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 1.621e-14 Identity = 46/163 (28.22%), Postives = 73/163 (44.79%), Query Frame = 3 Query: 3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTED---ALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 + ++ + G+ + + KP G + A G+ +R L E + A +G L F G YVD+ R GF+G ASHGA HR GS G P +VF + TV+N+ V+K+D ++ ++G VPG +G V ++ Sbjct: 47 YSAVQLAYGEISPRKVNKPVTGQYAAAGINPRRFLAELRLDNPDAAAEYQVGQELTAEIFTDGSYVDVTGTSKGKGFAGTMKRHGFRGQGASHGAQAVHRRPGSIGGCATPARVFKGTRMAGRMGNDRVTVQNLLVHKVDTENGVLLIKGAVPGRTGGLVMVR 209
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_GLOVI (50S ribosomal protein L3 OS=Gloeobacter violaceus GN=rplC PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 1.621e-14 Identity = 48/160 (30.00%), Postives = 78/160 (48.75%), Query Frame = 3 Query: 3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLK-RKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFI 479 + ++ +G G ++K +T+PEVGH + G+ R LREF + + + G + V F GQ VD+ R F P +HG S +HR+ GS G PG+VF + TV+ + V ++ P RN++ ++G +PG G + I Sbjct: 46 YTAVQLGFGTAREKVLTRPEVGHCKKAGLEAPVRHLREFRLPDSSQYTPGQQITVDLFAAGQLVDVVGTSIGKGFAGGQKRHHFGRGPMAHG-SKNHRAPGSIGAGTTPGRVFPGKRMPGRMGNERVTVRKLTVVRVIPERNVILIQGGLPGVEGGLLMI 204
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_CYTH3 (50S ribosomal protein L3 OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=rplC PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 1.621e-14 Identity = 51/152 (33.55%), Postives = 74/152 (48.68%), Query Frame = 3 Query: 33 KKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRH-FIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPA-SHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 KK+K TKP +GHF+ GV KRKL EF E+ L +G SL + F+ G +VD+ R GF G+ +HG R GS G P +VF + ++N+ + K+ P NL+ V G VPG+ ++V I+ Sbjct: 55 KKEKSTTKPLLGHFKKAGVSPKRKLVEFKGFENELT-LGQSLAAQDVFVEGDFVDVVGTAKGRGFQGVVKRHGFGGVGGQTHGQHNRARHAGSIGACSFPARVFKGTRMAGRMGNNRVKIQNLQILKVYPEHNLLVVSGSVPGSKNSYVLIE 205
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_CYAA5 (50S ribosomal protein L3 OS=Cyanothece sp. (strain ATCC 51142) GN=rplC PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 1.621e-14 Identity = 47/159 (29.56%), Postives = 76/159 (47.80%), Query Frame = 3 Query: 3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFI 479 + ++ +G + K+K +TKPE+GH + R L+E+ V + A +G ++ F G VDI R FK +HG S +HR GSTG PG+V+ + T +++ V ++D RNL+ ++G VPG G + I Sbjct: 47 YSAIQIGYLEVKEKALTKPELGHLKKVEASPLRHLKEYRVDDTATYTLGEAVKADIFNAGDLVDIAGTSMGRGFAGYQKRHNFKRGSMTHG-SKNHRLPGSTGAGTTPGRVYPGKKMAGQYGAVKTTTRHLQVVRVDAERNLLLIKGAVPGKPGGLLNI 204
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_DEHSC (50S ribosomal protein L3 OS=Dehalococcoides sp. (strain CBDB1) GN=rplC PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 2.117e-14 Identity = 47/155 (30.32%), Postives = 68/155 (43.87%), Query Frame = 3 Query: 18 VGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 V G K KH+T G R G + LRE V + A + +G + V F G+ +D RW F G P +HG S HR+ GS G PG+++ T++N+ V K D +NL+ V+G +PG + IK Sbjct: 49 VQLGYGKAKHITSAVKGQCRGFGE--FKVLREVDVDDIAAVSVGDQITVSDFKDGEKIDASGVSRGRGFSGVVKRWHFAGGPKTHGQSDRHRAPGSIGSTTTPGRIYKGKHMAGHMGNEAVTIRNLVVLKTDAEKNLLMVKGAIPGGKNTIILIK 201
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_DEHSB (50S ribosomal protein L3 OS=Dehalococcoides sp. (strain BAV1) GN=rplC PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 2.117e-14 Identity = 47/155 (30.32%), Postives = 68/155 (43.87%), Query Frame = 3 Query: 18 VGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 V G K KH+T G R G + LRE V + A + +G + V F G+ +D RW F G P +HG S HR+ GS G PG+++ T++N+ V K D +NL+ V+G +PG + IK Sbjct: 49 VQLGYGKAKHITSAVKGQCRGFGE--FKVLREVDVDDIAAVSVGDQITVSDFKDGEKIDASGVSRGRGFSGVVKRWHFAGGPKTHGQSDRHRAPGSIGSTTTPGRIYKGKHMAGHMGNEAVTIRNLVVLKTDAEKNLLMVKGAIPGGKNTIILIK 201
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_CORDI (50S ribosomal protein L3 OS=Corynebacterium diphtheriae GN=rplC PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 2.117e-14 Identity = 44/158 (27.85%), Postives = 71/158 (44.94%), Query Frame = 3 Query: 9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 ++ + G+ + KP GHF+ GV +R + E + + + +G + V F +VD+ R GF G A+HG +HR +G G PG+VF + T +N+ V KID NL+ ++G +PG G V +K Sbjct: 52 AIQIAYGEIDPRKANKPAAGHFKKAGVTPRRHVAEIRMDDVSGYELGQDVTVEIFEGINFVDVTGTTKGKGYAGAMKRHGFAGQGAAHGNQAAHRRVGGIGACATPGRVFKGTRMAGRMGSDRVTTQNLKVQKIDADANLILIKGAIPGVRGGIVTVK 209
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_BRAHW (50S ribosomal protein L3 OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) GN=rplC PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 2.117e-14 Identity = 42/157 (26.75%), Postives = 76/157 (48.41%), Query Frame = 3 Query: 3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFV 473 + ++ +G G K+KH+ KP++G F+ + K+ L+EF + + + +G L F G ++D+ R + G P SHG++ R+ GS G P +V+ T++N+ V +I P NL+ ++G +PGA + V Sbjct: 45 YSAIQLGYGAVKEKHLKKPQIGQFKKANLEPKKYLKEFRMDDASSYTVGQELKADIFQAGDFIDVSSLSKGRGFAGVMKRHNYDGGPMSHGSNFRRRA-GSIGCNSYPARVWKGKGMPGHMGNTLTTIQNLKVVEIRPDDNLIMIKGAIPGAINSIV 200 The following BLAST results are available for this feature:
BLAST of CX291249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX291249 ID=CX291249; Name=CX291249; organism=Citrus clementina; type=EST; length=484bpback to top |