CX291249

Overview
NameCX291249
Unique NameCX291249
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length484
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_CLOPH (50S ribosomal protein L3 OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=rplC PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.241e-14
Identity = 50/160 (31.25%), Postives = 70/160 (43.75%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            + ++ VG G  ++  + KP+ GHF   GV  KR L+EF     A   +G  + V  F  G  +D               R G    P  HG+   HR  GS G    PG+VF            + TV+N+ V KID   NL+ V+G VPG     + +K
Sbjct:   46 YAAVQVGFGDIRETLVNKPQKGHFAKAGVANKRFLKEFRFENAADYTVGQEIKVDIFTAGDKIDATGTSKGKGFQGAIKRHGLSRGPMGHGSKF-HRHAGSNGAATTPGRVFKGKHMPGQMGNVKVTVQNLEVVKIDVDNNLILVKGAVPGPKKAMIMLK 204          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_MYCPA (50S ribosomal protein L3 OS=Mycobacterium paratuberculosis GN=rplC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.621e-14
Identity = 46/163 (28.22%), Postives = 73/163 (44.79%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTED---ALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            + ++ +  G+   + + KP  G + A G+  +R L E  +      A   +G  L    F  G YVD+              R GF+G  ASHGA   HR  GS G    P +VF            + TV+N+ V+K+D    ++ ++G VPG +G  V ++
Sbjct:   47 YSAVQLAYGEISPRKVNKPVTGQYAAAGINPRRFLAELRLDNPDAAAEYQVGQELTAEIFTDGSYVDVTGTSKGKGFAGTMKRHGFRGQGASHGAQAVHRRPGSIGGCATPARVFKGTRMAGRMGNDRVTVQNLLVHKVDTENGVLLIKGAVPGRTGGLVMVR 209          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_MYCA1 (50S ribosomal protein L3 OS=Mycobacterium avium (strain 104) GN=rplC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.621e-14
Identity = 46/163 (28.22%), Postives = 73/163 (44.79%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTED---ALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            + ++ +  G+   + + KP  G + A G+  +R L E  +      A   +G  L    F  G YVD+              R GF+G  ASHGA   HR  GS G    P +VF            + TV+N+ V+K+D    ++ ++G VPG +G  V ++
Sbjct:   47 YSAVQLAYGEISPRKVNKPVTGQYAAAGINPRRFLAELRLDNPDAAAEYQVGQELTAEIFTDGSYVDVTGTSKGKGFAGTMKRHGFRGQGASHGAQAVHRRPGSIGGCATPARVFKGTRMAGRMGNDRVTVQNLLVHKVDTENGVLLIKGAVPGRTGGLVMVR 209          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_GLOVI (50S ribosomal protein L3 OS=Gloeobacter violaceus GN=rplC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.621e-14
Identity = 48/160 (30.00%), Postives = 78/160 (48.75%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLK-RKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFI 479
            + ++ +G G  ++K +T+PEVGH +  G+    R LREF + + +    G  + V  F  GQ VD+              R  F   P +HG S +HR+ GS G    PG+VF            + TV+ + V ++ P RN++ ++G +PG  G  + I
Sbjct:   46 YTAVQLGFGTAREKVLTRPEVGHCKKAGLEAPVRHLREFRLPDSSQYTPGQQITVDLFAAGQLVDVVGTSIGKGFAGGQKRHHFGRGPMAHG-SKNHRAPGSIGAGTTPGRVFPGKRMPGRMGNERVTVRKLTVVRVIPERNVILIQGGLPGVEGGLLMI 204          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_CYTH3 (50S ribosomal protein L3 OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=rplC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.621e-14
Identity = 51/152 (33.55%), Postives = 74/152 (48.68%), Query Frame = 3
Query:   33 KKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRH-FIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPA-SHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            KK+K  TKP +GHF+  GV  KRKL EF   E+ L  +G SL  +  F+ G +VD+              R GF G+   +HG     R  GS G    P +VF            +  ++N+ + K+ P  NL+ V G VPG+  ++V I+
Sbjct:   55 KKEKSTTKPLLGHFKKAGVSPKRKLVEFKGFENELT-LGQSLAAQDVFVEGDFVDVVGTAKGRGFQGVVKRHGFGGVGGQTHGQHNRARHAGSIGACSFPARVFKGTRMAGRMGNNRVKIQNLQILKVYPEHNLLVVSGSVPGSKNSYVLIE 205          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_CYAA5 (50S ribosomal protein L3 OS=Cyanothece sp. (strain ATCC 51142) GN=rplC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.621e-14
Identity = 47/159 (29.56%), Postives = 76/159 (47.80%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFI 479
            + ++ +G  + K+K +TKPE+GH +       R L+E+ V + A   +G ++    F  G  VDI              R  FK    +HG S +HR  GSTG    PG+V+            + T +++ V ++D  RNL+ ++G VPG  G  + I
Sbjct:   47 YSAIQIGYLEVKEKALTKPELGHLKKVEASPLRHLKEYRVDDTATYTLGEAVKADIFNAGDLVDIAGTSMGRGFAGYQKRHNFKRGSMTHG-SKNHRLPGSTGAGTTPGRVYPGKKMAGQYGAVKTTTRHLQVVRVDAERNLLLIKGAVPGKPGGLLNI 204          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_DEHSC (50S ribosomal protein L3 OS=Dehalococcoides sp. (strain CBDB1) GN=rplC PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.117e-14
Identity = 47/155 (30.32%), Postives = 68/155 (43.87%), Query Frame = 3
Query:   18 VGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            V  G  K KH+T    G  R  G    + LRE  V + A + +G  + V  F  G+ +D               RW F G P +HG S  HR+ GS G    PG+++              T++N+ V K D  +NL+ V+G +PG     + IK
Sbjct:   49 VQLGYGKAKHITSAVKGQCRGFGE--FKVLREVDVDDIAAVSVGDQITVSDFKDGEKIDASGVSRGRGFSGVVKRWHFAGGPKTHGQSDRHRAPGSIGSTTTPGRIYKGKHMAGHMGNEAVTIRNLVVLKTDAEKNLLMVKGAIPGGKNTIILIK 201          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_DEHSB (50S ribosomal protein L3 OS=Dehalococcoides sp. (strain BAV1) GN=rplC PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.117e-14
Identity = 47/155 (30.32%), Postives = 68/155 (43.87%), Query Frame = 3
Query:   18 VGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            V  G  K KH+T    G  R  G    + LRE  V + A + +G  + V  F  G+ +D               RW F G P +HG S  HR+ GS G    PG+++              T++N+ V K D  +NL+ V+G +PG     + IK
Sbjct:   49 VQLGYGKAKHITSAVKGQCRGFGE--FKVLREVDVDDIAAVSVGDQITVSDFKDGEKIDASGVSRGRGFSGVVKRWHFAGGPKTHGQSDRHRAPGSIGSTTTPGRIYKGKHMAGHMGNEAVTIRNLVVLKTDAEKNLLMVKGAIPGGKNTIILIK 201          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_CORDI (50S ribosomal protein L3 OS=Corynebacterium diphtheriae GN=rplC PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.117e-14
Identity = 44/158 (27.85%), Postives = 71/158 (44.94%), Query Frame = 3
Query:    9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            ++ +  G+   +   KP  GHF+  GV  +R + E  + + +   +G  + V  F    +VD+              R GF G  A+HG   +HR +G  G    PG+VF            + T +N+ V KID   NL+ ++G +PG  G  V +K
Sbjct:   52 AIQIAYGEIDPRKANKPAAGHFKKAGVTPRRHVAEIRMDDVSGYELGQDVTVEIFEGINFVDVTGTTKGKGYAGAMKRHGFAGQGAAHGNQAAHRRVGGIGACATPGRVFKGTRMAGRMGSDRVTTQNLKVQKIDADANLILIKGAIPGVRGGIVTVK 209          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_BRAHW (50S ribosomal protein L3 OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) GN=rplC PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.117e-14
Identity = 42/157 (26.75%), Postives = 76/157 (48.41%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFV 473
            + ++ +G G  K+KH+ KP++G F+   +  K+ L+EF + + +   +G  L    F  G ++D+              R  + G P SHG++   R+ GS G    P +V+              T++N+ V +I P  NL+ ++G +PGA  + V
Sbjct:   45 YSAIQLGYGAVKEKHLKKPQIGQFKKANLEPKKYLKEFRMDDASSYTVGQELKADIFQAGDFIDVSSLSKGRGFAGVMKRHNYDGGPMSHGSNFRRRA-GSIGCNSYPARVWKGKGMPGHMGNTLTTIQNLKVVEIRPDDNLIMIKGAIPGAINSIV 200          
The following BLAST results are available for this feature:
BLAST of CX291249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL3_CLOPH1.241e-1431.2550S ribosomal protein L3 OS=Clostridium phytoferme... [more]
RL3_MYCPA1.621e-1428.2250S ribosomal protein L3 OS=Mycobacterium paratube... [more]
RL3_MYCA11.621e-1428.2250S ribosomal protein L3 OS=Mycobacterium avium (s... [more]
RL3_GLOVI1.621e-1430.0050S ribosomal protein L3 OS=Gloeobacter violaceus ... [more]
RL3_CYTH31.621e-1433.5550S ribosomal protein L3 OS=Cytophaga hutchinsonii... [more]
RL3_CYAA51.621e-1429.5650S ribosomal protein L3 OS=Cyanothece sp. (strain... [more]
RL3_DEHSC2.117e-1430.3250S ribosomal protein L3 OS=Dehalococcoides sp. (s... [more]
RL3_DEHSB2.117e-1430.3250S ribosomal protein L3 OS=Dehalococcoides sp. (s... [more]
RL3_CORDI2.117e-1427.8550S ribosomal protein L3 OS=Corynebacterium diphth... [more]
RL3_BRAHW2.117e-1426.7550S ribosomal protein L3 OS=Brachyspira hyodysente... [more]

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Properties
Property NameValue
Genbank descriptionC03005G12SK OF2 Citrus clementina cDNA clone C03005G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291249 ID=CX291249; Name=CX291249; organism=Citrus clementina; type=EST; length=484bp
GTTTCTTTTCCTTGCACGTTGGATGCGGGCAGAAGAAGGATAAACATATG
ACAAAACCTGAAGTGGGTCATTTTAGAGCTCAAGGTGTTCCACTGAAGAG
GAAATTGCGGGAGTTTCCTGTCACAGAAGATGCACTTCTCCCCATTGGCA
CATCACTTGGAGTTCGTCATTTTATTCCTGGCCAATACGTTGATATCACG
GGTACCACGAAAGGGAAAGGTTTTCAGGGTGGAATGAAAAGATGGGGATT
TAAAGGAATGCCAGCTTCTCATGGTGCATCATTGTCGCATCGAAGTCTTG
GTTCTACCGGTCAGAGGGATGCTCCTGGCAAGGTATTTAAGGGCAAAAAA
ATGCCTGGGCGAATGGGTGGAAAGCAGAGAACCGTAAAAAATGTATGGGT
ATACAAAATAGATCCAGCAAGGAATTTGATGTGGGTGAGAGGCCAGGTGC
CAGGTGCTTCAGGAAACTTTGTATTTATAAAGGA
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