CX291249
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_RICAH (50S ribosomal protein L3 OS=Rickettsia akari (strain Hartford) GN=rplC PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 3.849e-24 Identity = 59/158 (37.34%), Postives = 85/158 (53.80%), Query Frame = 3 Query: 9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 +L +G KK +TKP F + K KL+EF ++E + I +L V HF+ GQ+VDI R F+G+ ASHG S+SHRS GSTGQR PGKVF Q T++N+ ++ +D R L+ +RG +PG +++ IK Sbjct: 48 ALVIGIKDKKISRVTKPMKQVFANAKISPKTKLKEFRISEGNFIDIAANLEVDHFMAGQFVDITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGCNQVTIQNLKIFAVDRERKLIMIRGSIPGHKNSYLSIK 205
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_RICAE (50S ribosomal protein L3 OS=Rickettsia africae (strain ESF-5) GN=rplC PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 3.849e-24 Identity = 59/158 (37.34%), Postives = 85/158 (53.80%), Query Frame = 3 Query: 9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 +L VG KK +TKP F + K KL+EF ++E+ + I SL V HF GQ+VDI R F+G+ ASHG S+SHRS GSTGQR PGKVF Q T++N+ ++ +D R L+ ++G +PG +++ +K Sbjct: 48 ALVVGVKDKKISRVTKPMRQVFANAKISPKTKLKEFRISEENFIDIAASLEVDHFTAGQFVDITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGCNQVTIQNLKIFAVDKERKLIMIQGSIPGHKNSYLSVK 205
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_RHILW (50S ribosomal protein L3 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=rplC PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 3.849e-24 Identity = 60/160 (37.50%), Postives = 85/160 (53.12%), Query Frame = 3 Query: 3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 + ++ +G GQ K K+ +K G+F V K K+ EF V+ED LL IGT + HF GQ VD+ R GF G+ A+HG S+SHRS GSTG R PGKVF + T +N+ V D R L+ ++G VPG+ G ++ ++ Sbjct: 46 YTAVQLGAGQAKVKNTSKAMRGNFAVANVEPKAKVAEFRVSEDQLLEIGTEIKAGHFAAGQLVDVTGTTIGKGFAGAMKRHGFGGLRATHGVSVSHRSHGSTGSRQDPGKVFKNKKMAGHMGQTRVTTQNLEVVSTDEDRGLILIKGAVPGSKGAWIIVR 205
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_ERWCT (50S ribosomal protein L3 OS=Erwinia carotovora subsp. atroseptica GN=rplC PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 3.849e-24 Identity = 60/158 (37.97%), Postives = 84/158 (53.16%), Query Frame = 3 Query: 9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 ++ V G KK +TKPE GHF GV R LREF ++E +G S+ V F + VD+ RW F+ A+HG SLSHR+ GS GQ PGKVF + TV+++ V ++D RNL+ V+G VPGA+G+ + +K Sbjct: 47 AVQVTAGAKKANRVTKPEAGHFAKAGVEAGRTLREFRLSEGEEFTVGQSISVEIFADIKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRAPGSIGQNQTPGKVFKGKKMAGQLGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVK 204
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_RICRS (50S ribosomal protein L3 OS=Rickettsia rickettsii (strain Sheila Smith) GN=rplC PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 5.027e-24 Identity = 58/158 (36.71%), Postives = 85/158 (53.80%), Query Frame = 3 Query: 9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 +L +G KK +TKP F + K KL+EF ++E+ + I SL V HF GQ+VDI R F+G+ ASHG S+SHRS GSTGQR PGKVF Q T++N+ ++ +D R L+ ++G +PG +++ +K Sbjct: 48 ALVIGVKDKKISRVTKPMRQVFANAKISPKTKLKEFRISEENFIDIAASLEVDHFTAGQFVDITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGCNQVTIQNLKIFAVDKERKLIMIQGSIPGHKNSYLSVK 205
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_RICRO (50S ribosomal protein L3 OS=Rickettsia rickettsii (strain Iowa) GN=rplC PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 5.027e-24 Identity = 58/158 (36.71%), Postives = 85/158 (53.80%), Query Frame = 3 Query: 9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 +L +G KK +TKP F + K KL+EF ++E+ + I SL V HF GQ+VDI R F+G+ ASHG S+SHRS GSTGQR PGKVF Q T++N+ ++ +D R L+ ++G +PG +++ +K Sbjct: 48 ALVIGVKDKKISRVTKPMRQVFANAKISPKTKLKEFRISEENFIDIAASLEVDHFTAGQFVDITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGCNQVTIQNLKIFAVDKERKLIMIQGSIPGHKNSYLSVK 205
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_RICPU (50S ribosomal protein L3 OS=Rickettsia peacockii (strain Rustic) GN=rplC PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 5.027e-24 Identity = 58/158 (36.71%), Postives = 85/158 (53.80%), Query Frame = 3 Query: 9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 +L +G KK +TKP F + K KL+EF ++E+ + I SL V HF GQ+VDI R F+G+ ASHG S+SHRS GSTGQR PGKVF Q T++N+ ++ +D R L+ ++G +PG +++ +K Sbjct: 48 ALVIGVKDKKISRVTKPMRQVFANAKISPKTKLKEFRISEENFIDIAASLEVDHFTAGQFVDITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGCNQVTIQNLKIFAVDKERKLIMIQGSIPGHKNSYLSVK 205
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_PECCP (50S ribosomal protein L3 OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rplC PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 8.575e-24 Identity = 60/158 (37.97%), Postives = 83/158 (52.53%), Query Frame = 3 Query: 9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 ++ V G KK +TKPE GHF GV R LREF ++E +G S+ V F + VD+ RW F+ A+HG SLSHR GS GQ PGKVF + TV+++ V ++D RNL+ V+G VPGA+G+ + +K Sbjct: 47 AVQVTTGAKKANRVTKPEAGHFAKAGVEAGRTLREFRLSEGEEFTVGQSISVEIFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQLGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVK 204
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_RICTY (50S ribosomal protein L3 OS=Rickettsia typhi GN=rplC PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 1.463e-23 Identity = 58/158 (36.71%), Postives = 85/158 (53.80%), Query Frame = 3 Query: 9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 +L +G +K +TKP F + K KL+EF ++ED + I + L V HF GQ+VDI R F+G+ ASHG S+SHRS GSTGQR PGKVF Q T++N+ ++ ID R L+ ++G +PG +++ +K Sbjct: 48 ALVIGVKDQKISRVTKPMKQVFANAKISPKTKLKEFRISEDNFIDIASILEVDHFSVGQFVDITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGCNQVTIQNLKIFAIDTNRKLIMIQGSIPGHKNSYLLVK 205
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_RICCN (50S ribosomal protein L3 OS=Rickettsia conorii GN=rplC PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 1.463e-23 Identity = 57/158 (36.08%), Postives = 85/158 (53.80%), Query Frame = 3 Query: 9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 +L +G KK +TKP F + K KL+EF ++E+ + I SL V HF GQ+VDI R F+G+ ASHG S+SHRS GSTGQR PGKVF + T++N+ ++ +D R L+ ++G +PG +++ +K Sbjct: 48 ALVIGVKDKKISRVTKPMRQVFANAKISPKTKLKEFRISEENFIDIAASLEVDHFTAGQFVDITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGCNKVTIQNLKIFAVDKERKLIMIQGSIPGHKNSYLSVK 205 The following BLAST results are available for this feature:
BLAST of CX291249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX291249 ID=CX291249; Name=CX291249; organism=Citrus clementina; type=EST; length=484bpback to top |