CX291249

Overview
NameCX291249
Unique NameCX291249
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length484
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_RICAH (50S ribosomal protein L3 OS=Rickettsia akari (strain Hartford) GN=rplC PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 3.849e-24
Identity = 59/158 (37.34%), Postives = 85/158 (53.80%), Query Frame = 3
Query:    9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            +L +G   KK   +TKP    F    +  K KL+EF ++E   + I  +L V HF+ GQ+VDI              R  F+G+ ASHG S+SHRS GSTGQR  PGKVF            Q T++N+ ++ +D  R L+ +RG +PG   +++ IK
Sbjct:   48 ALVIGIKDKKISRVTKPMKQVFANAKISPKTKLKEFRISEGNFIDIAANLEVDHFMAGQFVDITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGCNQVTIQNLKIFAVDRERKLIMIRGSIPGHKNSYLSIK 205          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_RICAE (50S ribosomal protein L3 OS=Rickettsia africae (strain ESF-5) GN=rplC PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 3.849e-24
Identity = 59/158 (37.34%), Postives = 85/158 (53.80%), Query Frame = 3
Query:    9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            +L VG   KK   +TKP    F    +  K KL+EF ++E+  + I  SL V HF  GQ+VDI              R  F+G+ ASHG S+SHRS GSTGQR  PGKVF            Q T++N+ ++ +D  R L+ ++G +PG   +++ +K
Sbjct:   48 ALVVGVKDKKISRVTKPMRQVFANAKISPKTKLKEFRISEENFIDIAASLEVDHFTAGQFVDITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGCNQVTIQNLKIFAVDKERKLIMIQGSIPGHKNSYLSVK 205          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_RHILW (50S ribosomal protein L3 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=rplC PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 3.849e-24
Identity = 60/160 (37.50%), Postives = 85/160 (53.12%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            + ++ +G GQ K K+ +K   G+F    V  K K+ EF V+ED LL IGT +   HF  GQ VD+              R GF G+ A+HG S+SHRS GSTG R  PGKVF            + T +N+ V   D  R L+ ++G VPG+ G ++ ++
Sbjct:   46 YTAVQLGAGQAKVKNTSKAMRGNFAVANVEPKAKVAEFRVSEDQLLEIGTEIKAGHFAAGQLVDVTGTTIGKGFAGAMKRHGFGGLRATHGVSVSHRSHGSTGSRQDPGKVFKNKKMAGHMGQTRVTTQNLEVVSTDEDRGLILIKGAVPGSKGAWIIVR 205          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_ERWCT (50S ribosomal protein L3 OS=Erwinia carotovora subsp. atroseptica GN=rplC PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 3.849e-24
Identity = 60/158 (37.97%), Postives = 84/158 (53.16%), Query Frame = 3
Query:    9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            ++ V  G KK   +TKPE GHF   GV   R LREF ++E     +G S+ V  F   + VD+              RW F+   A+HG SLSHR+ GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G+ + +K
Sbjct:   47 AVQVTAGAKKANRVTKPEAGHFAKAGVEAGRTLREFRLSEGEEFTVGQSISVEIFADIKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRAPGSIGQNQTPGKVFKGKKMAGQLGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVK 204          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_RICRS (50S ribosomal protein L3 OS=Rickettsia rickettsii (strain Sheila Smith) GN=rplC PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.027e-24
Identity = 58/158 (36.71%), Postives = 85/158 (53.80%), Query Frame = 3
Query:    9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            +L +G   KK   +TKP    F    +  K KL+EF ++E+  + I  SL V HF  GQ+VDI              R  F+G+ ASHG S+SHRS GSTGQR  PGKVF            Q T++N+ ++ +D  R L+ ++G +PG   +++ +K
Sbjct:   48 ALVIGVKDKKISRVTKPMRQVFANAKISPKTKLKEFRISEENFIDIAASLEVDHFTAGQFVDITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGCNQVTIQNLKIFAVDKERKLIMIQGSIPGHKNSYLSVK 205          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_RICRO (50S ribosomal protein L3 OS=Rickettsia rickettsii (strain Iowa) GN=rplC PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.027e-24
Identity = 58/158 (36.71%), Postives = 85/158 (53.80%), Query Frame = 3
Query:    9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            +L +G   KK   +TKP    F    +  K KL+EF ++E+  + I  SL V HF  GQ+VDI              R  F+G+ ASHG S+SHRS GSTGQR  PGKVF            Q T++N+ ++ +D  R L+ ++G +PG   +++ +K
Sbjct:   48 ALVIGVKDKKISRVTKPMRQVFANAKISPKTKLKEFRISEENFIDIAASLEVDHFTAGQFVDITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGCNQVTIQNLKIFAVDKERKLIMIQGSIPGHKNSYLSVK 205          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_RICPU (50S ribosomal protein L3 OS=Rickettsia peacockii (strain Rustic) GN=rplC PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.027e-24
Identity = 58/158 (36.71%), Postives = 85/158 (53.80%), Query Frame = 3
Query:    9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            +L +G   KK   +TKP    F    +  K KL+EF ++E+  + I  SL V HF  GQ+VDI              R  F+G+ ASHG S+SHRS GSTGQR  PGKVF            Q T++N+ ++ +D  R L+ ++G +PG   +++ +K
Sbjct:   48 ALVIGVKDKKISRVTKPMRQVFANAKISPKTKLKEFRISEENFIDIAASLEVDHFTAGQFVDITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGCNQVTIQNLKIFAVDKERKLIMIQGSIPGHKNSYLSVK 205          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_PECCP (50S ribosomal protein L3 OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rplC PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 8.575e-24
Identity = 60/158 (37.97%), Postives = 83/158 (52.53%), Query Frame = 3
Query:    9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            ++ V  G KK   +TKPE GHF   GV   R LREF ++E     +G S+ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G+ + +K
Sbjct:   47 AVQVTTGAKKANRVTKPEAGHFAKAGVEAGRTLREFRLSEGEEFTVGQSISVEIFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQLGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVK 204          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_RICTY (50S ribosomal protein L3 OS=Rickettsia typhi GN=rplC PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.463e-23
Identity = 58/158 (36.71%), Postives = 85/158 (53.80%), Query Frame = 3
Query:    9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            +L +G   +K   +TKP    F    +  K KL+EF ++ED  + I + L V HF  GQ+VDI              R  F+G+ ASHG S+SHRS GSTGQR  PGKVF            Q T++N+ ++ ID  R L+ ++G +PG   +++ +K
Sbjct:   48 ALVIGVKDQKISRVTKPMKQVFANAKISPKTKLKEFRISEDNFIDIASILEVDHFSVGQFVDITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGCNQVTIQNLKIFAIDTNRKLIMIQGSIPGHKNSYLLVK 205          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_RICCN (50S ribosomal protein L3 OS=Rickettsia conorii GN=rplC PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.463e-23
Identity = 57/158 (36.08%), Postives = 85/158 (53.80%), Query Frame = 3
Query:    9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            +L +G   KK   +TKP    F    +  K KL+EF ++E+  + I  SL V HF  GQ+VDI              R  F+G+ ASHG S+SHRS GSTGQR  PGKVF            + T++N+ ++ +D  R L+ ++G +PG   +++ +K
Sbjct:   48 ALVIGVKDKKISRVTKPMRQVFANAKISPKTKLKEFRISEENFIDIAASLEVDHFTAGQFVDITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGCNKVTIQNLKIFAVDKERKLIMIQGSIPGHKNSYLSVK 205          
The following BLAST results are available for this feature:
BLAST of CX291249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL3_RICAH3.849e-2437.3450S ribosomal protein L3 OS=Rickettsia akari (stra... [more]
RL3_RICAE3.849e-2437.3450S ribosomal protein L3 OS=Rickettsia africae (st... [more]
RL3_RHILW3.849e-2437.5050S ribosomal protein L3 OS=Rhizobium leguminosaru... [more]
RL3_ERWCT3.849e-2437.9750S ribosomal protein L3 OS=Erwinia carotovora sub... [more]
RL3_RICRS5.027e-2436.7150S ribosomal protein L3 OS=Rickettsia rickettsii ... [more]
RL3_RICRO5.027e-2436.7150S ribosomal protein L3 OS=Rickettsia rickettsii ... [more]
RL3_RICPU5.027e-2436.7150S ribosomal protein L3 OS=Rickettsia peacockii (... [more]
RL3_PECCP8.575e-2437.9750S ribosomal protein L3 OS=Pectobacterium carotov... [more]
RL3_RICTY1.463e-2336.7150S ribosomal protein L3 OS=Rickettsia typhi GN=rp... [more]
RL3_RICCN1.463e-2336.0850S ribosomal protein L3 OS=Rickettsia conorii GN=... [more]

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Properties
Property NameValue
Genbank descriptionC03005G12SK OF2 Citrus clementina cDNA clone C03005G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291249 ID=CX291249; Name=CX291249; organism=Citrus clementina; type=EST; length=484bp
GTTTCTTTTCCTTGCACGTTGGATGCGGGCAGAAGAAGGATAAACATATG
ACAAAACCTGAAGTGGGTCATTTTAGAGCTCAAGGTGTTCCACTGAAGAG
GAAATTGCGGGAGTTTCCTGTCACAGAAGATGCACTTCTCCCCATTGGCA
CATCACTTGGAGTTCGTCATTTTATTCCTGGCCAATACGTTGATATCACG
GGTACCACGAAAGGGAAAGGTTTTCAGGGTGGAATGAAAAGATGGGGATT
TAAAGGAATGCCAGCTTCTCATGGTGCATCATTGTCGCATCGAAGTCTTG
GTTCTACCGGTCAGAGGGATGCTCCTGGCAAGGTATTTAAGGGCAAAAAA
ATGCCTGGGCGAATGGGTGGAAAGCAGAGAACCGTAAAAAATGTATGGGT
ATACAAAATAGATCCAGCAAGGAATTTGATGTGGGTGAGAGGCCAGGTGC
CAGGTGCTTCAGGAAACTTTGTATTTATAAAGGA
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