CX291249

Overview
NameCX291249
Unique NameCX291249
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length484
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_RICFE (50S ribosomal protein L3 OS=Rickettsia felis GN=rplC PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.910e-23
Identity = 57/158 (36.08%), Postives = 85/158 (53.80%), Query Frame = 3
Query:    9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            +L +G   KK   +TKP    F    +  K KL+EF ++E+  + I  SL V +F  GQ+VDI              R  F+G+ ASHG S+SHRS GSTGQR  PGKVF            Q T++N+ ++ +D  R L+ ++G +PG   +++ +K
Sbjct:   48 ALVIGIKDKKISRVTKPMKQVFANAKISPKTKLKEFRISEENFIDIAASLEVDYFTAGQFVDITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGCNQVTIQNLKIFAVDKERKLIMIQGSIPGHKNSYLSVK 205          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_MESSB (50S ribosomal protein L3 OS=Mesorhizobium sp. (strain BNC1) GN=rplC PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.495e-23
Identity = 59/160 (36.88%), Postives = 85/160 (53.12%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            + ++ +G G  K K+ +K   GHF A  V  K K+ EF V+ + LL +G  +   HF+PGQ VD+              R  F G  A+HG S+SHR+ GSTGQR  PGKVF            + T +N+ V   D  R L+ VRG VPG+ G+++ ++
Sbjct:   46 YTAVQLGVGLAKVKNTSKALRGHFAAASVEPKAKVAEFRVSPENLLDVGAEITADHFVPGQKVDVTGTSIGKGFQGVMKRHNFGGGRATHGNSVSHRTHGSTGQRQDPGKVFKGKKMAGHMGDRRVTTQNLEVVSTDTERGLILVRGAVPGSKGSWIMVR 205          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_BRUSI (50S ribosomal protein L3 OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=rplC PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.495e-23
Identity = 60/160 (37.50%), Postives = 82/160 (51.25%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            + ++ +G G  K K+ +K   GHF    V  K KL EF V+ D LL +G  +   HF+ GQ VD+              R  F G  ASHG S++HRS GSTGQR  PGKVF            + T +N+ V   D  R L+ VRG VPG+ G ++ ++
Sbjct:   46 YTAVQLGVGMAKVKNTSKAMRGHFAKAEVEPKAKLAEFRVSPDNLLEVGVEITAEHFVAGQKVDVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRSHGSTGQRQDPGKVFKGKKMAGHMGQTRVTTQNIEVVSTDSDRGLILVRGAVPGSKGAWILVR 205          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_BRUO2 (50S ribosomal protein L3 OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=rplC PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.495e-23
Identity = 60/160 (37.50%), Postives = 82/160 (51.25%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            + ++ +G G  K K+ +K   GHF    V  K KL EF V+ D LL +G  +   HF+ GQ VD+              R  F G  ASHG S++HRS GSTGQR  PGKVF            + T +N+ V   D  R L+ VRG VPG+ G ++ ++
Sbjct:   46 YTAVQLGVGMAKVKNTSKAMRGHFAKAEVEPKAKLAEFRVSPDNLLEVGVEITAEHFVAGQKVDVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRSHGSTGQRQDPGKVFKGKKMAGHMGQTRVTTQNIEVVSTDSDRGLILVRGAVPGSKGAWILVR 205          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_BRUME (50S ribosomal protein L3 OS=Brucella melitensis GN=rplC PE=3 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 2.495e-23
Identity = 60/160 (37.50%), Postives = 82/160 (51.25%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            + ++ +G G  K K+ +K   GHF    V  K KL EF V+ D LL +G  +   HF+ GQ VD+              R  F G  ASHG S++HRS GSTGQR  PGKVF            + T +N+ V   D  R L+ VRG VPG+ G ++ ++
Sbjct:   46 YTAVQLGVGMAKVKNTSKAMRGHFAKAEVEPKAKLAEFRVSPDNLLEVGVEITAEHFVAGQKVDVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRSHGSTGQRQDPGKVFKGKKMAGHMGQTRVTTQNIEVVSTDSDRGLILVRGAVPGSKGAWILVR 205          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_BRUMB (50S ribosomal protein L3 OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=rplC PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.495e-23
Identity = 60/160 (37.50%), Postives = 82/160 (51.25%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            + ++ +G G  K K+ +K   GHF    V  K KL EF V+ D LL +G  +   HF+ GQ VD+              R  F G  ASHG S++HRS GSTGQR  PGKVF            + T +N+ V   D  R L+ VRG VPG+ G ++ ++
Sbjct:   46 YTAVQLGVGMAKVKNTSKAMRGHFAKAEVEPKAKLAEFRVSPDNLLEVGVEITAEHFVAGQKVDVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRSHGSTGQRQDPGKVFKGKKMAGHMGQTRVTTQNIEVVSTDSDRGLILVRGAVPGSKGAWILVR 205          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_BRUC2 (50S ribosomal protein L3 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=rplC PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.495e-23
Identity = 60/160 (37.50%), Postives = 82/160 (51.25%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            + ++ +G G  K K+ +K   GHF    V  K KL EF V+ D LL +G  +   HF+ GQ VD+              R  F G  ASHG S++HRS GSTGQR  PGKVF            + T +N+ V   D  R L+ VRG VPG+ G ++ ++
Sbjct:   46 YTAVQLGVGMAKVKNTSKAMRGHFAKAEVEPKAKLAEFRVSPDNLLEVGVEITAEHFVAGQKVDVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRSHGSTGQRQDPGKVFKGKKMAGHMGQTRVTTQNIEVVSTDSDRGLILVRGAVPGSKGAWILVR 205          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_BRUAB (50S ribosomal protein L3 OS=Brucella abortus GN=rplC PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.495e-23
Identity = 60/160 (37.50%), Postives = 82/160 (51.25%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            + ++ +G G  K K+ +K   GHF    V  K KL EF V+ D LL +G  +   HF+ GQ VD+              R  F G  ASHG S++HRS GSTGQR  PGKVF            + T +N+ V   D  R L+ VRG VPG+ G ++ ++
Sbjct:   46 YTAVQLGVGMAKVKNTSKAMRGHFAKAEVEPKAKLAEFRVSPDNLLEVGVEITAEHFVAGQKVDVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRSHGSTGQRQDPGKVFKGKKMAGHMGQTRVTTQNIEVVSTDSDRGLILVRGAVPGSKGAWILVR 205          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_BRUA2 (50S ribosomal protein L3 OS=Brucella abortus (strain 2308) GN=rplC PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.495e-23
Identity = 60/160 (37.50%), Postives = 82/160 (51.25%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            + ++ +G G  K K+ +K   GHF    V  K KL EF V+ D LL +G  +   HF+ GQ VD+              R  F G  ASHG S++HRS GSTGQR  PGKVF            + T +N+ V   D  R L+ VRG VPG+ G ++ ++
Sbjct:   46 YTAVQLGVGMAKVKNTSKAMRGHFAKAEVEPKAKLAEFRVSPDNLLEVGVEITAEHFVAGQKVDVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRSHGSTGQRQDPGKVFKGKKMAGHMGQTRVTTQNIEVVSTDSDRGLILVRGAVPGSKGAWILVR 205          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_BRUA1 (50S ribosomal protein L3 OS=Brucella abortus (strain S19) GN=rplC PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.495e-23
Identity = 60/160 (37.50%), Postives = 82/160 (51.25%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            + ++ +G G  K K+ +K   GHF    V  K KL EF V+ D LL +G  +   HF+ GQ VD+              R  F G  ASHG S++HRS GSTGQR  PGKVF            + T +N+ V   D  R L+ VRG VPG+ G ++ ++
Sbjct:   46 YTAVQLGVGMAKVKNTSKAMRGHFAKAEVEPKAKLAEFRVSPDNLLEVGVEITAEHFVAGQKVDVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRSHGSTGQRQDPGKVFKGKKMAGHMGQTRVTTQNIEVVSTDSDRGLILVRGAVPGSKGAWILVR 205          
The following BLAST results are available for this feature:
BLAST of CX291249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL3_RICFE1.910e-2336.0850S ribosomal protein L3 OS=Rickettsia felis GN=rp... [more]
RL3_MESSB2.495e-2336.8850S ribosomal protein L3 OS=Mesorhizobium sp. (str... [more]
RL3_BRUSI2.495e-2337.5050S ribosomal protein L3 OS=Brucella suis (strain ... [more]
RL3_BRUO22.495e-2337.5050S ribosomal protein L3 OS=Brucella ovis (strain ... [more]
RL3_BRUME2.495e-2337.5050S ribosomal protein L3 OS=Brucella melitensis GN... [more]
RL3_BRUMB2.495e-2337.5050S ribosomal protein L3 OS=Brucella melitensis bi... [more]
RL3_BRUC22.495e-2337.5050S ribosomal protein L3 OS=Brucella canis (strain... [more]
RL3_BRUAB2.495e-2337.5050S ribosomal protein L3 OS=Brucella abortus GN=rp... [more]
RL3_BRUA22.495e-2337.5050S ribosomal protein L3 OS=Brucella abortus (stra... [more]
RL3_BRUA12.495e-2337.5050S ribosomal protein L3 OS=Brucella abortus (stra... [more]

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Properties
Property NameValue
Genbank descriptionC03005G12SK OF2 Citrus clementina cDNA clone C03005G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291249 ID=CX291249; Name=CX291249; organism=Citrus clementina; type=EST; length=484bp
GTTTCTTTTCCTTGCACGTTGGATGCGGGCAGAAGAAGGATAAACATATG
ACAAAACCTGAAGTGGGTCATTTTAGAGCTCAAGGTGTTCCACTGAAGAG
GAAATTGCGGGAGTTTCCTGTCACAGAAGATGCACTTCTCCCCATTGGCA
CATCACTTGGAGTTCGTCATTTTATTCCTGGCCAATACGTTGATATCACG
GGTACCACGAAAGGGAAAGGTTTTCAGGGTGGAATGAAAAGATGGGGATT
TAAAGGAATGCCAGCTTCTCATGGTGCATCATTGTCGCATCGAAGTCTTG
GTTCTACCGGTCAGAGGGATGCTCCTGGCAAGGTATTTAAGGGCAAAAAA
ATGCCTGGGCGAATGGGTGGAAAGCAGAGAACCGTAAAAAATGTATGGGT
ATACAAAATAGATCCAGCAAGGAATTTGATGTGGGTGAGAGGCCAGGTGC
CAGGTGCTTCAGGAAACTTTGTATTTATAAAGGA
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