CX291249

Overview
NameCX291249
Unique NameCX291249
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length484
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_PROMH (50S ribosomal protein L3 OS=Proteus mirabilis (strain HI4320) GN=rplC PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.258e-23
Identity = 59/158 (37.34%), Postives = 81/158 (51.27%), Query Frame = 3
Query:    9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            ++ V  G KK   + KPE GHF   GV   R LREF + E     +G S+ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PG+VF            Q TV+++ V ++D  RNL+ V+G VPGA+G+ + +K
Sbjct:   47 AIQVTTGSKKANRVLKPEAGHFAKAGVEAGRLLREFRLNEGEEYTVGQSISVEIFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGRVFKGKKMAGQLGNEQVTVQSLEVVRVDAERNLLLVKGAVPGATGSDLIVK 204          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_BRUSU (50S ribosomal protein L3 OS=Brucella suis GN=rplC PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.256e-23
Identity = 60/160 (37.50%), Postives = 82/160 (51.25%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            + ++ +G G  K K+ +K   GHF    V  K KL EF V+ D LL +G  +   HF+ GQ VD+              R  F G  ASHG S++HRS GSTGQR  PGKVF            + T +N+ V   D  R L+ VRG VPG+ G ++ ++
Sbjct:   46 YTAVQLGVGVAKVKNTSKAMRGHFAKAEVEPKAKLAEFRVSPDNLLEVGVEITAEHFVAGQKVDVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRSHGSTGQRQDPGKVFKGKKMAGHMGQTRVTTQNIEVVSTDSDRGLILVRGAVPGSKGAWILVR 205          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_ROSDO (50S ribosomal protein L3 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=rplC PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 5.558e-23
Identity = 58/160 (36.25%), Postives = 83/160 (51.88%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            + ++ +G G  K K  ++   GHF A  V  KRK+ EF V  + L+ +G  +   H+  GQ+VD+              R  F G+ ASHG S+SHRS GSTGQ   PGKVF            + T +N+ V + D  R L+ V+G VPG+ G +V +K
Sbjct:   47 YSAVQLGAGTAKAKRTSQAMRGHFAAAKVEPKRKVAEFRVDPENLIGVGEEITANHYFEGQFVDVAGTSIGKGFAGAMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKGKKMAGHMGAARVTTQNLQVVRTDANRGLIMVKGAVPGSKGGWVTVK 206          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_PHOLL (50S ribosomal protein L3 OS=Photorhabdus luminescens subsp. laumondii GN=rplC PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 5.558e-23
Identity = 59/158 (37.34%), Postives = 81/158 (51.27%), Query Frame = 3
Query:    9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            ++ V  G KK   + KPE GHF   GV   R LREF ++E     +G S+ V  F   + VD+              RW F+   ASHG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPG++G  + +K
Sbjct:   47 AIQVTTGSKKASRVNKPEAGHFAKAGVEAGRILREFRLSEGEEYAVGQSISVEIFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDASHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQLGNERVTVQSLDVVRVDAERNLLLVKGAVPGSTGGNLIVK 204          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_HYPNA (50S ribosomal protein L3 OS=Hyphomonas neptunium (strain ATCC 15444) GN=rplC PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.259e-23
Identity = 60/155 (38.71%), Postives = 81/155 (52.26%), Query Frame = 3
Query:   18 VGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            +G G KK K+ TK   G F   GV  K KL+EF V+ D L  +G+++   HF  GQ VD+              RW F G+ ASHG S+SHR+ GSTG    PG+VF            + T +N+ V + D  R L+ V+G VPG  G FV ++
Sbjct:   70 MGSGDKKAKNTTKALRGQFAKAGVAPKAKLKEFRVSGD-LPEVGSTVQADHFAEGQLVDVSAMSIGKGFAGAMKRWNFSGLRASHGVSISHRAHGSTGMNQDPGRVFKNKKMAGHLGDERVTTQNLVVVRTDVERGLILVKGSVPGHDGTFVEVR 223          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_SHISS (50S ribosomal protein L3 OS=Shigella sonnei (strain Ss046) GN=rplC PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 9.480e-23
Identity = 59/158 (37.34%), Postives = 81/158 (51.27%), Query Frame = 3
Query:    9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            ++ V  G KK   +TKPE GHF   GV   R L EF + E     +G S+ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G+ + +K
Sbjct:   47 AIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFAEVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVK 204          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_SHIFL (50S ribosomal protein L3 OS=Shigella flexneri GN=rplC PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 9.480e-23
Identity = 59/158 (37.34%), Postives = 81/158 (51.27%), Query Frame = 3
Query:    9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            ++ V  G KK   +TKPE GHF   GV   R L EF + E     +G S+ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G+ + +K
Sbjct:   47 AIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVK 204          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_SHIF8 (50S ribosomal protein L3 OS=Shigella flexneri serotype 5b (strain 8401) GN=rplC PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 9.480e-23
Identity = 59/158 (37.34%), Postives = 81/158 (51.27%), Query Frame = 3
Query:    9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            ++ V  G KK   +TKPE GHF   GV   R L EF + E     +G S+ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G+ + +K
Sbjct:   47 AIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVK 204          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_SHIDS (50S ribosomal protein L3 OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=rplC PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 9.480e-23
Identity = 59/158 (37.34%), Postives = 81/158 (51.27%), Query Frame = 3
Query:    9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            ++ V  G KK   +TKPE GHF   GV   R L EF + E     +G S+ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G+ + +K
Sbjct:   47 AIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVK 204          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_SHIBS (50S ribosomal protein L3 OS=Shigella boydii serotype 4 (strain Sb227) GN=rplC PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 9.480e-23
Identity = 59/158 (37.34%), Postives = 81/158 (51.27%), Query Frame = 3
Query:    9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            ++ V  G KK   +TKPE GHF   GV   R L EF + E     +G S+ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G+ + +K
Sbjct:   47 AIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVK 204          
The following BLAST results are available for this feature:
BLAST of CX291249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL3_PROMH3.258e-2337.3450S ribosomal protein L3 OS=Proteus mirabilis (str... [more]
RL3_BRUSU4.256e-2337.5050S ribosomal protein L3 OS=Brucella suis GN=rplC ... [more]
RL3_ROSDO5.558e-2336.2550S ribosomal protein L3 OS=Roseobacter denitrific... [more]
RL3_PHOLL5.558e-2337.3450S ribosomal protein L3 OS=Photorhabdus luminesce... [more]
RL3_HYPNA7.259e-2338.7150S ribosomal protein L3 OS=Hyphomonas neptunium (... [more]
RL3_SHISS9.480e-2337.3450S ribosomal protein L3 OS=Shigella sonnei (strai... [more]
RL3_SHIFL9.480e-2337.3450S ribosomal protein L3 OS=Shigella flexneri GN=r... [more]
RL3_SHIF89.480e-2337.3450S ribosomal protein L3 OS=Shigella flexneri sero... [more]
RL3_SHIDS9.480e-2337.3450S ribosomal protein L3 OS=Shigella dysenteriae s... [more]
RL3_SHIBS9.480e-2337.3450S ribosomal protein L3 OS=Shigella boydii seroty... [more]

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Properties
Property NameValue
Genbank descriptionC03005G12SK OF2 Citrus clementina cDNA clone C03005G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291249 ID=CX291249; Name=CX291249; organism=Citrus clementina; type=EST; length=484bp
GTTTCTTTTCCTTGCACGTTGGATGCGGGCAGAAGAAGGATAAACATATG
ACAAAACCTGAAGTGGGTCATTTTAGAGCTCAAGGTGTTCCACTGAAGAG
GAAATTGCGGGAGTTTCCTGTCACAGAAGATGCACTTCTCCCCATTGGCA
CATCACTTGGAGTTCGTCATTTTATTCCTGGCCAATACGTTGATATCACG
GGTACCACGAAAGGGAAAGGTTTTCAGGGTGGAATGAAAAGATGGGGATT
TAAAGGAATGCCAGCTTCTCATGGTGCATCATTGTCGCATCGAAGTCTTG
GTTCTACCGGTCAGAGGGATGCTCCTGGCAAGGTATTTAAGGGCAAAAAA
ATGCCTGGGCGAATGGGTGGAAAGCAGAGAACCGTAAAAAATGTATGGGT
ATACAAAATAGATCCAGCAAGGAATTTGATGTGGGTGAGAGGCCAGGTGC
CAGGTGCTTCAGGAAACTTTGTATTTATAAAGGA
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