CX291249
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_PROMH (50S ribosomal protein L3 OS=Proteus mirabilis (strain HI4320) GN=rplC PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 3.258e-23 Identity = 59/158 (37.34%), Postives = 81/158 (51.27%), Query Frame = 3 Query: 9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 ++ V G KK + KPE GHF GV R LREF + E +G S+ V F + VD+ RW F+ A+HG SLSHR GS GQ PG+VF Q TV+++ V ++D RNL+ V+G VPGA+G+ + +K Sbjct: 47 AIQVTTGSKKANRVLKPEAGHFAKAGVEAGRLLREFRLNEGEEYTVGQSISVEIFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGRVFKGKKMAGQLGNEQVTVQSLEVVRVDAERNLLLVKGAVPGATGSDLIVK 204
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_BRUSU (50S ribosomal protein L3 OS=Brucella suis GN=rplC PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 4.256e-23 Identity = 60/160 (37.50%), Postives = 82/160 (51.25%), Query Frame = 3 Query: 3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 + ++ +G G K K+ +K GHF V K KL EF V+ D LL +G + HF+ GQ VD+ R F G ASHG S++HRS GSTGQR PGKVF + T +N+ V D R L+ VRG VPG+ G ++ ++ Sbjct: 46 YTAVQLGVGVAKVKNTSKAMRGHFAKAEVEPKAKLAEFRVSPDNLLEVGVEITAEHFVAGQKVDVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRSHGSTGQRQDPGKVFKGKKMAGHMGQTRVTTQNIEVVSTDSDRGLILVRGAVPGSKGAWILVR 205
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_ROSDO (50S ribosomal protein L3 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=rplC PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 5.558e-23 Identity = 58/160 (36.25%), Postives = 83/160 (51.88%), Query Frame = 3 Query: 3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 + ++ +G G K K ++ GHF A V KRK+ EF V + L+ +G + H+ GQ+VD+ R F G+ ASHG S+SHRS GSTGQ PGKVF + T +N+ V + D R L+ V+G VPG+ G +V +K Sbjct: 47 YSAVQLGAGTAKAKRTSQAMRGHFAAAKVEPKRKVAEFRVDPENLIGVGEEITANHYFEGQFVDVAGTSIGKGFAGAMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKGKKMAGHMGAARVTTQNLQVVRTDANRGLIMVKGAVPGSKGGWVTVK 206
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_PHOLL (50S ribosomal protein L3 OS=Photorhabdus luminescens subsp. laumondii GN=rplC PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 5.558e-23 Identity = 59/158 (37.34%), Postives = 81/158 (51.27%), Query Frame = 3 Query: 9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 ++ V G KK + KPE GHF GV R LREF ++E +G S+ V F + VD+ RW F+ ASHG SLSHR GS GQ PGKVF + TV+++ V ++D RNL+ V+G VPG++G + +K Sbjct: 47 AIQVTTGSKKASRVNKPEAGHFAKAGVEAGRILREFRLSEGEEYAVGQSISVEIFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDASHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQLGNERVTVQSLDVVRVDAERNLLLVKGAVPGSTGGNLIVK 204
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_HYPNA (50S ribosomal protein L3 OS=Hyphomonas neptunium (strain ATCC 15444) GN=rplC PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 7.259e-23 Identity = 60/155 (38.71%), Postives = 81/155 (52.26%), Query Frame = 3 Query: 18 VGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 +G G KK K+ TK G F GV K KL+EF V+ D L +G+++ HF GQ VD+ RW F G+ ASHG S+SHR+ GSTG PG+VF + T +N+ V + D R L+ V+G VPG G FV ++ Sbjct: 70 MGSGDKKAKNTTKALRGQFAKAGVAPKAKLKEFRVSGD-LPEVGSTVQADHFAEGQLVDVSAMSIGKGFAGAMKRWNFSGLRASHGVSISHRAHGSTGMNQDPGRVFKNKKMAGHLGDERVTTQNLVVVRTDVERGLILVKGSVPGHDGTFVEVR 223
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_SHISS (50S ribosomal protein L3 OS=Shigella sonnei (strain Ss046) GN=rplC PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 9.480e-23 Identity = 59/158 (37.34%), Postives = 81/158 (51.27%), Query Frame = 3 Query: 9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 ++ V G KK +TKPE GHF GV R L EF + E +G S+ V F + VD+ RW F+ A+HG SLSHR GS GQ PGKVF + TV+++ V ++D RNL+ V+G VPGA+G+ + +K Sbjct: 47 AIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFAEVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVK 204
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_SHIFL (50S ribosomal protein L3 OS=Shigella flexneri GN=rplC PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 9.480e-23 Identity = 59/158 (37.34%), Postives = 81/158 (51.27%), Query Frame = 3 Query: 9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 ++ V G KK +TKPE GHF GV R L EF + E +G S+ V F + VD+ RW F+ A+HG SLSHR GS GQ PGKVF + TV+++ V ++D RNL+ V+G VPGA+G+ + +K Sbjct: 47 AIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVK 204
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_SHIF8 (50S ribosomal protein L3 OS=Shigella flexneri serotype 5b (strain 8401) GN=rplC PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 9.480e-23 Identity = 59/158 (37.34%), Postives = 81/158 (51.27%), Query Frame = 3 Query: 9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 ++ V G KK +TKPE GHF GV R L EF + E +G S+ V F + VD+ RW F+ A+HG SLSHR GS GQ PGKVF + TV+++ V ++D RNL+ V+G VPGA+G+ + +K Sbjct: 47 AIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVK 204
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_SHIDS (50S ribosomal protein L3 OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=rplC PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 9.480e-23 Identity = 59/158 (37.34%), Postives = 81/158 (51.27%), Query Frame = 3 Query: 9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 ++ V G KK +TKPE GHF GV R L EF + E +G S+ V F + VD+ RW F+ A+HG SLSHR GS GQ PGKVF + TV+++ V ++D RNL+ V+G VPGA+G+ + +K Sbjct: 47 AIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVK 204
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_SHIBS (50S ribosomal protein L3 OS=Shigella boydii serotype 4 (strain Sb227) GN=rplC PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 9.480e-23 Identity = 59/158 (37.34%), Postives = 81/158 (51.27%), Query Frame = 3 Query: 9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 ++ V G KK +TKPE GHF GV R L EF + E +G S+ V F + VD+ RW F+ A+HG SLSHR GS GQ PGKVF + TV+++ V ++D RNL+ V+G VPGA+G+ + +K Sbjct: 47 AIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVK 204 The following BLAST results are available for this feature:
BLAST of CX291249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX291249 ID=CX291249; Name=CX291249; organism=Citrus clementina; type=EST; length=484bpback to top |