CX291249
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_SHIB3 (50S ribosomal protein L3 OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=rplC PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 9.480e-23 Identity = 59/158 (37.34%), Postives = 81/158 (51.27%), Query Frame = 3 Query: 9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 ++ V G KK +TKPE GHF GV R L EF + E +G S+ V F + VD+ RW F+ A+HG SLSHR GS GQ PGKVF + TV+++ V ++D RNL+ V+G VPGA+G+ + +K Sbjct: 47 AIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVK 204
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_RICPR (50S ribosomal protein L3 OS=Rickettsia prowazekii GN=rplC PE=3 SV=2) HSP 1 Score: 105.916 bits (263), Expect = 9.480e-23 Identity = 56/158 (35.44%), Postives = 85/158 (53.80%), Query Frame = 3 Query: 9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 +L +G +K +TKP F + K KL+EF ++ED + I + L V HF GQ+VDI R F+G+ ASHG S+SHRS GSTGQR PGKVF + T++N+ ++ +D R L+ ++G +PG +++ +K Sbjct: 48 ALVIGVKDQKISKVTKPMKQVFANAKIAPKTKLKEFRISEDNFIDIASILEVDHFRVGQFVDITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGCNKVTIQNLKIFAVDTNRKLIMIQGSIPGHKNSYLLVK 205
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_PARL1 (50S ribosomal protein L3 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rplC PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 9.480e-23 Identity = 57/160 (35.62%), Postives = 84/160 (52.50%), Query Frame = 3 Query: 3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 + ++ +G G+ K K++ + G F V K +L EF V+ D LL +G + HFI GQYVD+ R F G+ A+HG S+SHRS GSTGQ PGKVF + T +N+ V + D + L+ V+G VPG+ G +V ++ Sbjct: 46 YTAVQLGTGRAKAKNVANAQRGQFARASVEPKLELVEFRVSPDNLLDVGVEITADHFIAGQYVDVSGTSIGKGFAGVMKRHNFGGLRATHGVSVSHRSHGSTGQNQDPGKVFKGKKMAGHMGATRVTTQNLEVVRTDADKGLIMVKGAVPGSKGGWVLVR 205
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_ESCF3 (50S ribosomal protein L3 OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=rplC PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 9.480e-23 Identity = 59/158 (37.34%), Postives = 81/158 (51.27%), Query Frame = 3 Query: 9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 ++ V G KK +TKPE GHF GV R L EF + E +G S+ V F + VD+ RW F+ A+HG SLSHR GS GQ PGKVF + TV+++ V ++D RNL+ V+G VPGA+G+ + +K Sbjct: 47 AIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVK 204
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_ECOUT (50S ribosomal protein L3 OS=Escherichia coli (strain UTI89 / UPEC) GN=rplC PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 9.480e-23 Identity = 59/158 (37.34%), Postives = 81/158 (51.27%), Query Frame = 3 Query: 9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 ++ V G KK +TKPE GHF GV R L EF + E +G S+ V F + VD+ RW F+ A+HG SLSHR GS GQ PGKVF + TV+++ V ++D RNL+ V+G VPGA+G+ + +K Sbjct: 47 AIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVK 204
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_ECOSM (50S ribosomal protein L3 OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=rplC PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 9.480e-23 Identity = 59/158 (37.34%), Postives = 81/158 (51.27%), Query Frame = 3 Query: 9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 ++ V G KK +TKPE GHF GV R L EF + E +G S+ V F + VD+ RW F+ A+HG SLSHR GS GQ PGKVF + TV+++ V ++D RNL+ V+G VPGA+G+ + +K Sbjct: 47 AIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVK 204
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_ECOSE (50S ribosomal protein L3 OS=Escherichia coli (strain SE11) GN=rplC PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 9.480e-23 Identity = 59/158 (37.34%), Postives = 81/158 (51.27%), Query Frame = 3 Query: 9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 ++ V G KK +TKPE GHF GV R L EF + E +G S+ V F + VD+ RW F+ A+HG SLSHR GS GQ PGKVF + TV+++ V ++D RNL+ V+G VPGA+G+ + +K Sbjct: 47 AIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVK 204
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_ECOLU (50S ribosomal protein L3 OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=rplC PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 9.480e-23 Identity = 59/158 (37.34%), Postives = 81/158 (51.27%), Query Frame = 3 Query: 9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 ++ V G KK +TKPE GHF GV R L EF + E +G S+ V F + VD+ RW F+ A+HG SLSHR GS GQ PGKVF + TV+++ V ++D RNL+ V+G VPGA+G+ + +K Sbjct: 47 AIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVK 204
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_ECOLI (50S ribosomal protein L3 OS=Escherichia coli (strain K12) GN=rplC PE=1 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 9.480e-23 Identity = 59/158 (37.34%), Postives = 81/158 (51.27%), Query Frame = 3 Query: 9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 ++ V G KK +TKPE GHF GV R L EF + E +G S+ V F + VD+ RW F+ A+HG SLSHR GS GQ PGKVF + TV+++ V ++D RNL+ V+G VPGA+G+ + +K Sbjct: 47 AIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVK 204
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_ECOLC (50S ribosomal protein L3 OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=rplC PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 9.480e-23 Identity = 59/158 (37.34%), Postives = 81/158 (51.27%), Query Frame = 3 Query: 9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 ++ V G KK +TKPE GHF GV R L EF + E +G S+ V F + VD+ RW F+ A+HG SLSHR GS GQ PGKVF + TV+++ V ++D RNL+ V+G VPGA+G+ + +K Sbjct: 47 AIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVK 204 The following BLAST results are available for this feature:
BLAST of CX291249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX291249 ID=CX291249; Name=CX291249; organism=Citrus clementina; type=EST; length=484bpback to top |