CX291249

Overview
NameCX291249
Unique NameCX291249
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length484
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_SHIB3 (50S ribosomal protein L3 OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=rplC PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 9.480e-23
Identity = 59/158 (37.34%), Postives = 81/158 (51.27%), Query Frame = 3
Query:    9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            ++ V  G KK   +TKPE GHF   GV   R L EF + E     +G S+ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G+ + +K
Sbjct:   47 AIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVK 204          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_RICPR (50S ribosomal protein L3 OS=Rickettsia prowazekii GN=rplC PE=3 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 9.480e-23
Identity = 56/158 (35.44%), Postives = 85/158 (53.80%), Query Frame = 3
Query:    9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            +L +G   +K   +TKP    F    +  K KL+EF ++ED  + I + L V HF  GQ+VDI              R  F+G+ ASHG S+SHRS GSTGQR  PGKVF            + T++N+ ++ +D  R L+ ++G +PG   +++ +K
Sbjct:   48 ALVIGVKDQKISKVTKPMKQVFANAKIAPKTKLKEFRISEDNFIDIASILEVDHFRVGQFVDITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGCNKVTIQNLKIFAVDTNRKLIMIQGSIPGHKNSYLLVK 205          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_PARL1 (50S ribosomal protein L3 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rplC PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 9.480e-23
Identity = 57/160 (35.62%), Postives = 84/160 (52.50%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            + ++ +G G+ K K++   + G F    V  K +L EF V+ D LL +G  +   HFI GQYVD+              R  F G+ A+HG S+SHRS GSTGQ   PGKVF            + T +N+ V + D  + L+ V+G VPG+ G +V ++
Sbjct:   46 YTAVQLGTGRAKAKNVANAQRGQFARASVEPKLELVEFRVSPDNLLDVGVEITADHFIAGQYVDVSGTSIGKGFAGVMKRHNFGGLRATHGVSVSHRSHGSTGQNQDPGKVFKGKKMAGHMGATRVTTQNLEVVRTDADKGLIMVKGAVPGSKGGWVLVR 205          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_ESCF3 (50S ribosomal protein L3 OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=rplC PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 9.480e-23
Identity = 59/158 (37.34%), Postives = 81/158 (51.27%), Query Frame = 3
Query:    9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            ++ V  G KK   +TKPE GHF   GV   R L EF + E     +G S+ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G+ + +K
Sbjct:   47 AIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVK 204          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_ECOUT (50S ribosomal protein L3 OS=Escherichia coli (strain UTI89 / UPEC) GN=rplC PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 9.480e-23
Identity = 59/158 (37.34%), Postives = 81/158 (51.27%), Query Frame = 3
Query:    9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            ++ V  G KK   +TKPE GHF   GV   R L EF + E     +G S+ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G+ + +K
Sbjct:   47 AIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVK 204          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_ECOSM (50S ribosomal protein L3 OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=rplC PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 9.480e-23
Identity = 59/158 (37.34%), Postives = 81/158 (51.27%), Query Frame = 3
Query:    9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            ++ V  G KK   +TKPE GHF   GV   R L EF + E     +G S+ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G+ + +K
Sbjct:   47 AIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVK 204          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_ECOSE (50S ribosomal protein L3 OS=Escherichia coli (strain SE11) GN=rplC PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 9.480e-23
Identity = 59/158 (37.34%), Postives = 81/158 (51.27%), Query Frame = 3
Query:    9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            ++ V  G KK   +TKPE GHF   GV   R L EF + E     +G S+ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G+ + +K
Sbjct:   47 AIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVK 204          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_ECOLU (50S ribosomal protein L3 OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=rplC PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 9.480e-23
Identity = 59/158 (37.34%), Postives = 81/158 (51.27%), Query Frame = 3
Query:    9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            ++ V  G KK   +TKPE GHF   GV   R L EF + E     +G S+ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G+ + +K
Sbjct:   47 AIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVK 204          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_ECOLI (50S ribosomal protein L3 OS=Escherichia coli (strain K12) GN=rplC PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 9.480e-23
Identity = 59/158 (37.34%), Postives = 81/158 (51.27%), Query Frame = 3
Query:    9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            ++ V  G KK   +TKPE GHF   GV   R L EF + E     +G S+ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G+ + +K
Sbjct:   47 AIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVK 204          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_ECOLC (50S ribosomal protein L3 OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=rplC PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 9.480e-23
Identity = 59/158 (37.34%), Postives = 81/158 (51.27%), Query Frame = 3
Query:    9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            ++ V  G KK   +TKPE GHF   GV   R L EF + E     +G S+ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G+ + +K
Sbjct:   47 AIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVK 204          
The following BLAST results are available for this feature:
BLAST of CX291249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL3_SHIB39.480e-2337.3450S ribosomal protein L3 OS=Shigella boydii seroty... [more]
RL3_RICPR9.480e-2335.4450S ribosomal protein L3 OS=Rickettsia prowazekii ... [more]
RL3_PARL19.480e-2335.6350S ribosomal protein L3 OS=Parvibaculum lavamenti... [more]
RL3_ESCF39.480e-2337.3450S ribosomal protein L3 OS=Escherichia fergusonii... [more]
RL3_ECOUT9.480e-2337.3450S ribosomal protein L3 OS=Escherichia coli (stra... [more]
RL3_ECOSM9.480e-2337.3450S ribosomal protein L3 OS=Escherichia coli (stra... [more]
RL3_ECOSE9.480e-2337.3450S ribosomal protein L3 OS=Escherichia coli (stra... [more]
RL3_ECOLU9.480e-2337.3450S ribosomal protein L3 OS=Escherichia coli O17:K... [more]
RL3_ECOLI9.480e-2337.3450S ribosomal protein L3 OS=Escherichia coli (stra... [more]
RL3_ECOLC9.480e-2337.3450S ribosomal protein L3 OS=Escherichia coli (stra... [more]

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Properties
Property NameValue
Genbank descriptionC03005G12SK OF2 Citrus clementina cDNA clone C03005G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291249 ID=CX291249; Name=CX291249; organism=Citrus clementina; type=EST; length=484bp
GTTTCTTTTCCTTGCACGTTGGATGCGGGCAGAAGAAGGATAAACATATG
ACAAAACCTGAAGTGGGTCATTTTAGAGCTCAAGGTGTTCCACTGAAGAG
GAAATTGCGGGAGTTTCCTGTCACAGAAGATGCACTTCTCCCCATTGGCA
CATCACTTGGAGTTCGTCATTTTATTCCTGGCCAATACGTTGATATCACG
GGTACCACGAAAGGGAAAGGTTTTCAGGGTGGAATGAAAAGATGGGGATT
TAAAGGAATGCCAGCTTCTCATGGTGCATCATTGTCGCATCGAAGTCTTG
GTTCTACCGGTCAGAGGGATGCTCCTGGCAAGGTATTTAAGGGCAAAAAA
ATGCCTGGGCGAATGGGTGGAAAGCAGAGAACCGTAAAAAATGTATGGGT
ATACAAAATAGATCCAGCAAGGAATTTGATGTGGGTGAGAGGCCAGGTGC
CAGGTGCTTCAGGAAACTTTGTATTTATAAAGGA
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