CX291249

Overview
NameCX291249
Unique NameCX291249
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length484
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_ECOL6 (50S ribosomal protein L3 OS=Escherichia coli O6 GN=rplC PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 9.480e-23
Identity = 59/158 (37.34%), Postives = 81/158 (51.27%), Query Frame = 3 
Query:    9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            ++ V  G KK   +TKPE GHF   GV   R L EF + E     +G S+ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G+ + +K
Sbjct:   47 AIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVK 204
[Close]
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_ECOL5 (50S ribosomal protein L3 OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=rplC PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 9.480e-23
Identity = 59/158 (37.34%), Postives = 81/158 (51.27%), Query Frame = 3 
Query:    9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            ++ V  G KK   +TKPE GHF   GV   R L EF + E     +G S+ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G+ + +K
Sbjct:   47 AIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVK 204
[Close]
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_ECOK1 (50S ribosomal protein L3 OS=Escherichia coli O1:K1 / APEC GN=rplC PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 9.480e-23
Identity = 59/158 (37.34%), Postives = 81/158 (51.27%), Query Frame = 3 
Query:    9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            ++ V  G KK   +TKPE GHF   GV   R L EF + E     +G S+ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G+ + +K
Sbjct:   47 AIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVK 204
[Close]
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_ECOHS (50S ribosomal protein L3 OS=Escherichia coli O9:H4 (strain HS) GN=rplC PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 9.480e-23
Identity = 59/158 (37.34%), Postives = 81/158 (51.27%), Query Frame = 3 
Query:    9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            ++ V  G KK   +TKPE GHF   GV   R L EF + E     +G S+ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G+ + +K
Sbjct:   47 AIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVK 204
[Close]
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_ECODH (50S ribosomal protein L3 OS=Escherichia coli (strain K12 / DH10B) GN=rplC PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 9.480e-23
Identity = 59/158 (37.34%), Postives = 81/158 (51.27%), Query Frame = 3 
Query:    9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            ++ V  G KK   +TKPE GHF   GV   R L EF + E     +G S+ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G+ + +K
Sbjct:   47 AIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVK 204
[Close]
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_ECOBW (50S ribosomal protein L3 OS=Escherichia coli (strain K12 / BW2952) GN=rplC PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 9.480e-23
Identity = 59/158 (37.34%), Postives = 81/158 (51.27%), Query Frame = 3 
Query:    9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            ++ V  G KK   +TKPE GHF   GV   R L EF + E     +G S+ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G+ + +K
Sbjct:   47 AIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVK 204
[Close]
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_ECO8A (50S ribosomal protein L3 OS=Escherichia coli O8 (strain IAI1) GN=rplC PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 9.480e-23
Identity = 59/158 (37.34%), Postives = 81/158 (51.27%), Query Frame = 3 
Query:    9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            ++ V  G KK   +TKPE GHF   GV   R L EF + E     +G S+ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G+ + +K
Sbjct:   47 AIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVK 204
[Close]
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_ECO81 (50S ribosomal protein L3 OS=Escherichia coli O81 (strain ED1a) GN=rplC PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 9.480e-23
Identity = 59/158 (37.34%), Postives = 81/158 (51.27%), Query Frame = 3 
Query:    9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            ++ V  G KK   +TKPE GHF   GV   R L EF + E     +G S+ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G+ + +K
Sbjct:   47 AIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVK 204
[Close]
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_ECO7I (50S ribosomal protein L3 OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=rplC PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 9.480e-23
Identity = 59/158 (37.34%), Postives = 81/158 (51.27%), Query Frame = 3 
Query:    9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            ++ V  G KK   +TKPE GHF   GV   R L EF + E     +G S+ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G+ + +K
Sbjct:   47 AIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVK 204
[Close]
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_ECO5E (50S ribosomal protein L3 OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=rplC PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 9.480e-23
Identity = 59/158 (37.34%), Postives = 81/158 (51.27%), Query Frame = 3 
Query:    9 SLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            ++ V  G KK   +TKPE GHF   GV   R L EF + E     +G S+ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G+ + +K
Sbjct:   47 AIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVK 204
The following BLAST results are available for this feature:
BLAST of CX291249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL3_ECOL69.480e-2337.3450S ribosomal protein L3 OS=Escherichia coli O6 GN... [more]
RL3_ECOL59.480e-2337.3450S ribosomal protein L3 OS=Escherichia coli O6:K1... [more]
RL3_ECOK19.480e-2337.3450S ribosomal protein L3 OS=Escherichia coli O1:K1... [more]
RL3_ECOHS9.480e-2337.3450S ribosomal protein L3 OS=Escherichia coli O9:H4... [more]
RL3_ECODH9.480e-2337.3450S ribosomal protein L3 OS=Escherichia coli (stra... [more]
RL3_ECOBW9.480e-2337.3450S ribosomal protein L3 OS=Escherichia coli (stra... [more]
RL3_ECO8A9.480e-2337.3450S ribosomal protein L3 OS=Escherichia coli O8 (s... [more]
RL3_ECO819.480e-2337.3450S ribosomal protein L3 OS=Escherichia coli O81 (... [more]
RL3_ECO7I9.480e-2337.3450S ribosomal protein L3 OS=Escherichia coli O7:K1... [more]
RL3_ECO5E9.480e-2337.3450S ribosomal protein L3 OS=Escherichia coli O157:... [more]

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Properties
Property NameValue
Genbank descriptionC03005G12SK OF2 Citrus clementina cDNA clone C03005G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291249 ID=CX291249; Name=CX291249; organism=Citrus clementina; type=EST; length=484bp
GTTTCTTTTCCTTGCACGTTGGATGCGGGCAGAAGAAGGATAAACATATG
ACAAAACCTGAAGTGGGTCATTTTAGAGCTCAAGGTGTTCCACTGAAGAG
GAAATTGCGGGAGTTTCCTGTCACAGAAGATGCACTTCTCCCCATTGGCA
CATCACTTGGAGTTCGTCATTTTATTCCTGGCCAATACGTTGATATCACG
GGTACCACGAAAGGGAAAGGTTTTCAGGGTGGAATGAAAAGATGGGGATT
TAAAGGAATGCCAGCTTCTCATGGTGCATCATTGTCGCATCGAAGTCTTG
GTTCTACCGGTCAGAGGGATGCTCCTGGCAAGGTATTTAAGGGCAAAAAA
ATGCCTGGGCGAATGGGTGGAAAGCAGAGAACCGTAAAAAATGTATGGGT
ATACAAAATAGATCCAGCAAGGAATTTGATGTGGGTGAGAGGCCAGGTGC
CAGGTGCTTCAGGAAACTTTGTATTTATAAAGGA
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