CX291297

Overview
NameCX291297
Unique NameCX291297
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length235
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_DESAP (60 kDa chaperonin OS=Desulforudis audaxviator (strain MP104C) GN=groL PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.256e-22
Identity = 50/71 (70.42%), Postives = 62/71 (87.32%), Query Frame = 1
Query:   22 DAVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            DA++KR+A I+  IE+   D++REKL ER+AKL+GGVAVI VGA TETE+KEKKLR+EDALNAT+AAVEEG
Sbjct:  339 DAITKRLAQIKKQIEDTTSDFDREKLQERLAKLAGGVAVINVGAATETEMKEKKLRIEDALNATRAAVEEG 409          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH602_SYNS9 (60 kDa chaperonin 2 OS=Synechococcus sp. (strain CC9902) GN=groL2 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.256e-22
Identity = 52/71 (73.24%), Postives = 62/71 (87.32%), Query Frame = 1
Query:   22 DAVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            +AVS RVA I+  ++  E DY+REKLNERIAKL+GGVAVI+VGA TETELK +KLR+EDALNAT+AAVEEG
Sbjct:  338 EAVSNRVAAIKRELDATESDYDREKLNERIAKLAGGVAVIKVGAATETELKNRKLRIEDALNATRAAVEEG 408          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH601_SYNS3 (60 kDa chaperonin 1 OS=Synechococcus sp. (strain CC9311) GN=groL1 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.558e-22
Identity = 50/73 (68.49%), Postives = 65/73 (89.04%), Query Frame = 1
Query:   16 TQDAVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            +++AVS RVA I+  ++N + +Y++EKLNERIAKL+GGVAVI+VGA TETELK +KLR+EDALNAT+AAVEEG
Sbjct:  336 SKEAVSARVASIKRELDNTDSEYDQEKLNERIAKLAGGVAVIKVGAPTETELKNRKLRIEDALNATRAAVEEG 408          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH602_PROM3 (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain MIT 9303) GN=groL2 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.481e-22
Identity = 50/72 (69.44%), Postives = 63/72 (87.50%), Query Frame = 1
Query:   19 QDAVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            +DAV+ RVA I+  ++  + +Y+REKLNERIAKL+GGVAVI+VGA TETELK +KLR+EDALNAT+AAVEEG
Sbjct:  337 RDAVNARVASIKRELDETDSEYDREKLNERIAKLAGGVAVIKVGAPTETELKNRKLRIEDALNATRAAVEEG 408          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH601_TRIEI (60 kDa chaperonin 1 OS=Trichodesmium erythraeum (strain IMS101) GN=groL1 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.481e-22
Identity = 50/73 (68.49%), Postives = 62/73 (84.93%), Query Frame = 1
Query:   16 TQDAVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            T + V KR+A IR  +  ++ DY++EKL ERIAKL+GGVAVI+VGA TETELK++KLR+EDALNATKAAVEEG
Sbjct:  336 TAEEVKKRIAQIRKQLGESDSDYDKEKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATKAAVEEG 408          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH601_SYNSC (60 kDa chaperonin 1 OS=Synechococcus sp. (strain CC9605) GN=groL1 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.481e-22
Identity = 52/72 (72.22%), Postives = 62/72 (86.11%), Query Frame = 1
Query:   19 QDAVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            + AVS+RV+ IR  +E  E DY+REKL ERIAKL+GGVAVI+VGA TETELK +KLR+EDALNAT+AAVEEG
Sbjct:  337 RQAVSERVSAIRRELEATESDYDREKLQERIAKLAGGVAVIKVGAPTETELKNRKLRIEDALNATRAAVEEG 408          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH601_PROMM (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain MIT 9313) GN=groL1 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.481e-22
Identity = 50/72 (69.44%), Postives = 63/72 (87.50%), Query Frame = 1
Query:   19 QDAVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            +DAV+ RVA I+  ++  + +Y+REKLNERIAKL+GGVAVI+VGA TETELK +KLR+EDALNAT+AAVEEG
Sbjct:  337 RDAVNARVASIKRELDETDSEYDREKLNERIAKLAGGVAVIKVGAPTETELKNRKLRIEDALNATRAAVEEG 408          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_PELTS (60 kDa chaperonin OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=groL PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.617e-21
Identity = 49/77 (63.64%), Postives = 63/77 (81.82%), Query Frame = 1
Query:    4 GTRSTQDAVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            G   + D ++KRVA I+  IE    ++++EKL ER+AKL+GGVAVIQVGA TETE+K+KKLR+EDALNAT+AAVEEG
Sbjct:  333 GGAGSTDEITKRVAQIKKQIEETTSEFDKEKLQERLAKLAGGVAVIQVGAATETEMKDKKLRIEDALNATRAAVEEG 409          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_STRAP (60 kDa chaperonin OS=Streptococcus anginosus GN=groL PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.112e-21
Identity = 50/71 (70.42%), Postives = 63/71 (88.73%), Query Frame = 1
Query:   22 DAVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            +A++ RVA I++ IE++  D++REKL ER+AKLSGGVAVI+VGA TETELKE KLR+EDALNAT+AAVEEG
Sbjct:  338 EAIANRVAVIKSQIESSTSDFDREKLQERLAKLSGGVAVIKVGAATETELKEMKLRIEDALNATRAAVEEG 408          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH602_GLOVI (60 kDa chaperonin 2 OS=Gloeobacter violaceus GN=groL2 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.112e-21
Identity = 49/70 (70.00%), Postives = 61/70 (87.14%), Query Frame = 1
Query:   25 AVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            AV KR+A I   +E+ + D++REKL ER+AKL+GGVAVI+VGA TETELK++KLR+EDALNATKAAVEEG
Sbjct:  340 AVEKRIAQIHKQMEDTDSDFDREKLQERLAKLAGGVAVIKVGAATETELKDRKLRIEDALNATKAAVEEG 409          
The following BLAST results are available for this feature:
BLAST of CX291297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_DESAP4.256e-2270.4260 kDa chaperonin OS=Desulforudis audaxviator (str... [more]
CH602_SYNS94.256e-2273.2460 kDa chaperonin 2 OS=Synechococcus sp. (strain C... [more]
CH601_SYNS35.558e-2268.4960 kDa chaperonin 1 OS=Synechococcus sp. (strain C... [more]
CH602_PROM39.481e-2269.4460 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH601_TRIEI9.481e-2268.4960 kDa chaperonin 1 OS=Trichodesmium erythraeum (s... [more]
CH601_SYNSC9.481e-2272.2260 kDa chaperonin 1 OS=Synechococcus sp. (strain C... [more]
CH601_PROMM9.481e-2269.4460 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]
CH60_PELTS1.617e-2163.6460 kDa chaperonin OS=Pelotomaculum thermopropionic... [more]
CH60_STRAP2.112e-2170.4260 kDa chaperonin OS=Streptococcus anginosus GN=gr... [more]
CH602_GLOVI2.112e-2170.0060 kDa chaperonin 2 OS=Gloeobacter violaceus GN=gr... [more]

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Properties
Property NameValue
Genbank descriptionC03006D09SK OF2 Citrus clementina cDNA clone C03006D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291297 ID=CX291297; Name=CX291297; organism=Citrus clementina; type=EST; length=235bp
TTCGGCACGAGGAGCACCCAGGATGCAGTGAGCAAACGAGTGGCGCACAT
CAGAACTCTAATTGAGAACGCTGAGCAAGACTATGAAAGGGAGAAGCTTA
ATGAAAGAATTGCTAAACTGTCAGGTGGTGTTGCTGTCATACAGGTTGGA
GCTCAAACTGAGACAGAGCTTAAAGAGAAGAAGTTGAGAGTCGAAGATGC
TCTTAATGCAACAAAGGCTGCAGTTGAGGAAGGTA
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