CX291297

Overview
NameCX291297
Unique NameCX291297
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length235
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_STRP2 (60 kDa chaperonin OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=groL PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.146e-21
Identity = 50/71 (70.42%), Postives = 61/71 (85.92%), Query Frame = 1
Query:   22 DAVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            +A+S RVA I++ IE    +++REKL ER+AKLSGGVAVI+VGA TETELKE KLR+EDALNAT+AAVEEG
Sbjct:  338 EAISHRVAVIKSQIETTTSEFDREKLQERLAKLSGGVAVIKVGAATETELKEMKLRIEDALNATRAAVEEG 408          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_STRGN (60 kDa chaperonin OS=Streptococcus gordonii GN=groL PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.146e-21
Identity = 49/71 (69.01%), Postives = 63/71 (88.73%), Query Frame = 1
Query:   22 DAVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            +A++ RVA I++ IE+A  ++++EKL ER+AKLSGGVAVI+VGA TETELKE KLR+EDALNAT+AAVEEG
Sbjct:  338 EAIANRVAVIKSQIESATSEFDKEKLQERLAKLSGGVAVIKVGAATETELKEMKLRIEDALNATRAAVEEG 408          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_STRGC (60 kDa chaperonin OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=groL PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.146e-21
Identity = 49/71 (69.01%), Postives = 63/71 (88.73%), Query Frame = 1
Query:   22 DAVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            +A++ RVA I++ IE+A  ++++EKL ER+AKLSGGVAVI+VGA TETELKE KLR+EDALNAT+AAVEEG
Sbjct:  338 EAIANRVAVIKSQIESATSEFDKEKLQERLAKLSGGVAVIKVGAATETELKEMKLRIEDALNATRAAVEEG 408          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_STRCV (60 kDa chaperonin OS=Streptococcus constellatus GN=groL PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.146e-21
Identity = 49/71 (69.01%), Postives = 63/71 (88.73%), Query Frame = 1
Query:   22 DAVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            +A++ RVA I++ IE+A  ++++EKL ER+AKLSGGVAVI+VGA TETELKE KLR+EDALNAT+AAVEEG
Sbjct:  338 EAIANRVAVIKSQIESATSEFDKEKLQERLAKLSGGVAVIKVGAATETELKEMKLRIEDALNATRAAVEEG 408          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_BRECH (60 kDa chaperonin OS=Brevibacillus choshinensis GN=groL PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.146e-21
Identity = 49/69 (71.01%), Postives = 59/69 (85.51%), Query Frame = 1
Query:   28 VSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            +  RVA IR  IE+   D++REKL ER+AKL+GGVAVI+VGA TETELKEKKLR+EDALN+T+AAVEEG
Sbjct:  340 IESRVAQIRQQIEDTTSDFDREKLQERLAKLAGGVAVIKVGAATETELKEKKLRIEDALNSTRAAVEEG 408          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_ALKMQ (60 kDa chaperonin OS=Alkaliphilus metalliredigens (strain QYMF) GN=groL PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.146e-21
Identity = 49/72 (68.06%), Postives = 59/72 (81.94%), Query Frame = 1
Query:   19 QDAVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            Q  +  RV+ I+  IE    D+++EKL ER+AKLSGGVAVIQVGA TETELKE+KLR+EDALNAT+AAVEEG
Sbjct:  337 QQLIKDRVSQIKKQIEETTSDFDKEKLQERLAKLSGGVAVIQVGAATETELKERKLRIEDALNATRAAVEEG 408          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH602_SYNPX (60 kDa chaperonin 2 OS=Synechococcus sp. (strain WH8102) GN=groL2 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.146e-21
Identity = 49/70 (70.00%), Postives = 61/70 (87.14%), Query Frame = 1
Query:   25 AVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            AV+ RVA I+  ++  + DY+REKLNERIAKL+GGVAVI+VGA TETELK +KLR+EDALNAT+AA+EEG
Sbjct:  339 AVADRVAAIKRELDATDSDYDREKLNERIAKLAGGVAVIKVGAPTETELKNRKLRIEDALNATRAAIEEG 408          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH602_SYNP6 (60 kDa chaperonin 2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=groL2 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.146e-21
Identity = 48/69 (69.57%), Postives = 59/69 (85.51%), Query Frame = 1
Query:   28 VSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            V+ R+A IR  +E  + DY+REKL ERIAKL+GGVAVI+VGA TETELK +KLR+EDALNAT+AA+EEG
Sbjct:  341 VAARIAQIRRSLEETDSDYDREKLQERIAKLAGGVAVIKVGAPTETELKNRKLRIEDALNATRAAIEEG 409          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_SYMTH (60 kDa chaperonin OS=Symbiobacterium thermophilum GN=groL PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.026e-21
Identity = 49/73 (67.12%), Postives = 60/73 (82.19%), Query Frame = 1
Query:   16 TQDAVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            + +A+  RVA I+  IE    D++REKL ER+AKL+GGVAVI+VGA TE ELKEKKLR+EDALNAT+AAVEEG
Sbjct:  338 SSEAIKNRVAAIKRQIEETTSDFDREKLQERLAKLAGGVAVIKVGAATEVELKEKKLRIEDALNATRAAVEEG 410          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_PETMO (60 kDa chaperonin OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=groL PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.026e-21
Identity = 49/77 (63.64%), Postives = 60/77 (77.92%), Query Frame = 1
Query:    4 GTRSTQDAVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            G +    A+ +R+A I+  IEN   DYE+E L ER+AKLSGGVAVI+ GA TETELKEKK R+EDAL+AT+AAVEEG
Sbjct:  332 GGKGEPTAIKERIAQIKAQIENTSSDYEKETLQERLAKLSGGVAVIKAGAATETELKEKKHRIEDALSATRAAVEEG 408          
The following BLAST results are available for this feature:
BLAST of CX291297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_STRP26.146e-2170.4260 kDa chaperonin OS=Streptococcus pneumoniae sero... [more]
CH60_STRGN6.146e-2169.0160 kDa chaperonin OS=Streptococcus gordonii GN=gro... [more]
CH60_STRGC6.146e-2169.0160 kDa chaperonin OS=Streptococcus gordonii (strai... [more]
CH60_STRCV6.146e-2169.0160 kDa chaperonin OS=Streptococcus constellatus GN... [more]
CH60_BRECH6.146e-2171.0160 kDa chaperonin OS=Brevibacillus choshinensis GN... [more]
CH60_ALKMQ6.146e-2168.0660 kDa chaperonin OS=Alkaliphilus metalliredigens ... [more]
CH602_SYNPX6.146e-2170.0060 kDa chaperonin 2 OS=Synechococcus sp. (strain W... [more]
CH602_SYNP66.146e-2169.5760 kDa chaperonin 2 OS=Synechococcus sp. (strain A... [more]
CH60_SYMTH8.026e-2167.1260 kDa chaperonin OS=Symbiobacterium thermophilum ... [more]
CH60_PETMO8.026e-2163.6460 kDa chaperonin OS=Petrotoga mobilis (strain DSM... [more]

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Properties
Property NameValue
Genbank descriptionC03006D09SK OF2 Citrus clementina cDNA clone C03006D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291297 ID=CX291297; Name=CX291297; organism=Citrus clementina; type=EST; length=235bp
TTCGGCACGAGGAGCACCCAGGATGCAGTGAGCAAACGAGTGGCGCACAT
CAGAACTCTAATTGAGAACGCTGAGCAAGACTATGAAAGGGAGAAGCTTA
ATGAAAGAATTGCTAAACTGTCAGGTGGTGTTGCTGTCATACAGGTTGGA
GCTCAAACTGAGACAGAGCTTAAAGAGAAGAAGTTGAGAGTCGAAGATGC
TCTTAATGCAACAAAGGCTGCAGTTGAGGAAGGTA
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