CX291297

Overview
NameCX291297
Unique NameCX291297
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length235
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_NEIFL (60 kDa chaperonin OS=Neisseria flavescens GN=groL PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.404e-19
Identity = 48/69 (69.57%), Postives = 56/69 (81.16%), Query Frame = 1
Query:   28 VSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            +  RVA IR  IE A  DY +EKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AAVEEG
Sbjct:  342 IEARVAEIRQQIETATSDYGKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEG 410          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_MANSM (60 kDa chaperonin OS=Mannheimia succiniciproducens (strain MBEL55E) GN=groL PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.404e-19
Identity = 47/69 (68.12%), Postives = 57/69 (82.61%), Query Frame = 1
Query:   28 VSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            +  RVA IR  IE +  DY++EKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AAVEEG
Sbjct:  342 IKGRVAQIRQQIEESTSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEG 410          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_LEGPL (60 kDa chaperonin OS=Legionella pneumophila (strain Lens) GN=groL PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.404e-19
Identity = 45/69 (65.22%), Postives = 56/69 (81.16%), Query Frame = 1
Query:   28 VSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            ++ R+  IR  +E    DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AAVEEG
Sbjct:  341 INARITQIRAQMEETTSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEG 409          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_LEGPH (60 kDa chaperonin OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=groL PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 4.404e-19
Identity = 45/69 (65.22%), Postives = 56/69 (81.16%), Query Frame = 1
Query:   28 VSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            ++ R+  IR  +E    DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AAVEEG
Sbjct:  341 INARITQIRAQMEETTSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEG 409          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_HAES2 (60 kDa chaperonin OS=Haemophilus somnus (strain 2336) GN=groL PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.404e-19
Identity = 47/69 (68.12%), Postives = 57/69 (82.61%), Query Frame = 1
Query:   28 VSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            +  RVA IR  IE A  DY++EKL ER+AKL+GGVAVI+VGA TE E+KEKK RV+DAL+AT+AAVEEG
Sbjct:  342 IKGRVAQIRQQIEEATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVDDALHATRAAVEEG 410          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_HAES1 (60 kDa chaperonin OS=Haemophilus somnus (strain 129Pt) GN=groL PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.404e-19
Identity = 47/69 (68.12%), Postives = 57/69 (82.61%), Query Frame = 1
Query:   28 VSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            +  RVA IR  IE A  DY++EKL ER+AKL+GGVAVI+VGA TE E+KEKK RV+DAL+AT+AAVEEG
Sbjct:  342 IKGRVAQIRQQIEEATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVDDALHATRAAVEEG 410          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_GEOTN (60 kDa chaperonin OS=Geobacillus thermodenitrificans (strain NG80-2) GN=groL PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.404e-19
Identity = 44/71 (61.97%), Postives = 58/71 (81.69%), Query Frame = 1
Query:   22 DAVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            + +  R+  IR  +E    +++REKL ER+AKL+GGVAVI+VGA TETELKE+KLR+EDALN+T+AAVEEG
Sbjct:  338 ERIKARINQIRAQLEETTSEFDREKLQERLAKLAGGVAVIKVGAATETELKERKLRIEDALNSTRAAVEEG 408          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_GEOSW (60 kDa chaperonin OS=Geobacillus sp. (strain WCH70) GN=groL PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.404e-19
Identity = 44/71 (61.97%), Postives = 58/71 (81.69%), Query Frame = 1
Query:   22 DAVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            + +  R+  IR  +E    +++REKL ER+AKL+GGVAVI+VGA TETELKE+KLR+EDALN+T+AAVEEG
Sbjct:  338 ERIKARINQIRAQLEETTSEFDREKLQERLAKLAGGVAVIKVGAATETELKERKLRIEDALNSTRAAVEEG 408          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_GEOMG (60 kDa chaperonin OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=groL PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.404e-19
Identity = 47/69 (68.12%), Postives = 55/69 (79.71%), Query Frame = 1
Query:   28 VSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            +  RV  IR  IE    DY+REKL ER+AKL GGVAVI+VGA TETE+KEKK RVEDAL+AT+AAV+EG
Sbjct:  341 IQGRVKQIRAQIEETSSDYDREKLQERLAKLVGGVAVIKVGAATETEMKEKKARVEDALHATRAAVDEG 409          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_GEOLS (60 kDa chaperonin OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=groL PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.404e-19
Identity = 47/69 (68.12%), Postives = 56/69 (81.16%), Query Frame = 1
Query:   28 VSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            +  RV  IR  IE+   DY+REKL ER+AKL GGVAVI+VGA TETE+KEKK RVEDAL+AT+AAV+EG
Sbjct:  342 IQGRVKQIRAQIEDTTSDYDREKLQERLAKLVGGVAVIKVGAATETEMKEKKARVEDALHATRAAVDEG 410          
The following BLAST results are available for this feature:
BLAST of CX291297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_NEIFL4.404e-1969.5760 kDa chaperonin OS=Neisseria flavescens GN=groL ... [more]
CH60_MANSM4.404e-1968.1260 kDa chaperonin OS=Mannheimia succiniciproducens... [more]
CH60_LEGPL4.404e-1965.2260 kDa chaperonin OS=Legionella pneumophila (strai... [more]
CH60_LEGPH4.404e-1965.2260 kDa chaperonin OS=Legionella pneumophila subsp.... [more]
CH60_HAES24.404e-1968.1260 kDa chaperonin OS=Haemophilus somnus (strain 23... [more]
CH60_HAES14.404e-1968.1260 kDa chaperonin OS=Haemophilus somnus (strain 12... [more]
CH60_GEOTN4.404e-1961.9760 kDa chaperonin OS=Geobacillus thermodenitrifica... [more]
CH60_GEOSW4.404e-1961.9760 kDa chaperonin OS=Geobacillus sp. (strain WCH70... [more]
CH60_GEOMG4.404e-1968.1260 kDa chaperonin OS=Geobacter metallireducens (st... [more]
CH60_GEOLS4.404e-1968.1260 kDa chaperonin OS=Geobacter lovleyi (strain ATC... [more]

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Properties
Property NameValue
Genbank descriptionC03006D09SK OF2 Citrus clementina cDNA clone C03006D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291297 ID=CX291297; Name=CX291297; organism=Citrus clementina; type=EST; length=235bp
TTCGGCACGAGGAGCACCCAGGATGCAGTGAGCAAACGAGTGGCGCACAT
CAGAACTCTAATTGAGAACGCTGAGCAAGACTATGAAAGGGAGAAGCTTA
ATGAAAGAATTGCTAAACTGTCAGGTGGTGTTGCTGTCATACAGGTTGGA
GCTCAAACTGAGACAGAGCTTAAAGAGAAGAAGTTGAGAGTCGAAGATGC
TCTTAATGCAACAAAGGCTGCAGTTGAGGAAGGTA
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