CX291297 | Citrus Genome Database

Overview


Name	CX291297
Unique Name	CX291297
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	235

Libraries


Library Name	Type
OF2	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_SHIF8 (60 kDa chaperonin OS=Shigella flexneri serotype 5b (strain 8401) GN=groL PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.369e-20
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 1

Query:   25 AVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            A+  RVA IR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AAVEEG
Sbjct:  341 AIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEG 410

[Close]

BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_SHIDS (60 kDa chaperonin OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=groL PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.369e-20
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 1

Query:   25 AVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            A+  RVA IR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AAVEEG
Sbjct:  341 AIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEG 410

[Close]

BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_SHIBS (60 kDa chaperonin OS=Shigella boydii serotype 4 (strain Sb227) GN=groL PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.369e-20
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 1

Query:   25 AVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            A+  RVA IR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AAVEEG
Sbjct:  341 AIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEG 410

[Close]

BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_SHIB3 (60 kDa chaperonin OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=groL PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.369e-20
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 1

Query:   25 AVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            A+  RVA IR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AAVEEG
Sbjct:  341 AIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEG 410

[Close]

BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_SALTY (60 kDa chaperonin OS=Salmonella typhimurium GN=groL PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.369e-20
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 1

Query:   25 AVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            A+  RVA IR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AAVEEG
Sbjct:  341 AIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEG 410

[Close]

BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_SALTI (60 kDa chaperonin OS=Salmonella typhi GN=groL PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.369e-20
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 1

Query:   25 AVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            A+  RVA IR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AAVEEG
Sbjct:  341 AIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEG 410

[Close]

BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_SALSV (60 kDa chaperonin OS=Salmonella schwarzengrund (strain CVM19633) GN=groL PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.369e-20
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 1

Query:   25 AVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            A+  RVA IR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AAVEEG
Sbjct:  341 AIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEG 410

[Close]

BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_SALPK (60 kDa chaperonin OS=Salmonella paratyphi A (strain AKU_12601) GN=groL PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.369e-20
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 1

Query:   25 AVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            A+  RVA IR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AAVEEG
Sbjct:  341 AIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEG 410

[Close]

BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_SALPC (60 kDa chaperonin OS=Salmonella paratyphi C (strain RKS4594) GN=groL PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.369e-20
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 1

Query:   25 AVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            A+  RVA IR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AAVEEG
Sbjct:  341 AIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEG 410

[Close]

BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_SALPB (60 kDa chaperonin OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=groL PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.369e-20
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 1

Query:   25 AVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            A+  RVA IR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AAVEEG
Sbjct:  341 AIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEG 410

The following BLAST results are available for this feature:

BLAST of CX291297 vs. ExPASy Swiss-Prot

BLAST of CX291297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
CH60_SHIF8	1.369e-20	71.43	60 kDa chaperonin OS=Shigella flexneri serotype 5b...	[more]
CH60_SHIDS	1.369e-20	71.43	60 kDa chaperonin OS=Shigella dysenteriae serotype...	[more]
CH60_SHIBS	1.369e-20	71.43	60 kDa chaperonin OS=Shigella boydii serotype 4 (s...	[more]
CH60_SHIB3	1.369e-20	71.43	60 kDa chaperonin OS=Shigella boydii serotype 18 (...	[more]
CH60_SALTY	1.369e-20	71.43	60 kDa chaperonin OS=Salmonella typhimurium GN=gro...	[more]
CH60_SALTI	1.369e-20	71.43	60 kDa chaperonin OS=Salmonella typhi GN=groL PE=3...	[more]
CH60_SALSV	1.369e-20	71.43	60 kDa chaperonin OS=Salmonella schwarzengrund (st...	[more]
CH60_SALPK	1.369e-20	71.43	60 kDa chaperonin OS=Salmonella paratyphi A (strai...	[more]
CH60_SALPC	1.369e-20	71.43	60 kDa chaperonin OS=Salmonella paratyphi C (strai...	[more]
CH60_SALPB	1.369e-20	71.43	60 kDa chaperonin OS=Salmonella paratyphi B (strai...	[more]

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Properties


Property Name	Value
Genbank description	C03006D09SK OF2 Citrus clementina cDNA clone C03006D09, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX291297 ID=CX291297; Name=CX291297; organism=Citrus clementina; type=EST; length=235bp
TTCGGCACGAGGAGCACCCAGGATGCAGTGAGCAAACGAGTGGCGCACAT
CAGAACTCTAATTGAGAACGCTGAGCAAGACTATGAAAGGGAGAAGCTTA
ATGAAAGAATTGCTAAACTGTCAGGTGGTGTTGCTGTCATACAGGTTGGA
GCTCAAACTGAGACAGAGCTTAAAGAGAAGAAGTTGAGAGTCGAAGATGC
TCTTAATGCAACAAAGGCTGCAGTTGAGGAAGGTA