CX291297

Overview
NameCX291297
Unique NameCX291297
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length235
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_SALPA (60 kDa chaperonin OS=Salmonella paratyphi A GN=groL PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.369e-20
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 1
Query:   25 AVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            A+  RVA IR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AAVEEG
Sbjct:  341 AIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEG 410          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_SALHS (60 kDa chaperonin OS=Salmonella heidelberg (strain SL476) GN=groL PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.369e-20
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 1
Query:   25 AVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            A+  RVA IR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AAVEEG
Sbjct:  341 AIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEG 410          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_SALG2 (60 kDa chaperonin OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=groL PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.369e-20
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 1
Query:   25 AVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            A+  RVA IR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AAVEEG
Sbjct:  341 AIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEG 410          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_SALEP (60 kDa chaperonin OS=Salmonella enteritidis PT4 (strain P125109) GN=groL PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.369e-20
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 1
Query:   25 AVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            A+  RVA IR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AAVEEG
Sbjct:  341 AIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEG 410          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_SALDC (60 kDa chaperonin OS=Salmonella dublin (strain CT_02021853) GN=groL PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.369e-20
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 1
Query:   25 AVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            A+  RVA IR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AAVEEG
Sbjct:  341 AIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEG 410          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_SALCH (60 kDa chaperonin OS=Salmonella choleraesuis GN=groL PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.369e-20
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 1
Query:   25 AVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            A+  RVA IR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AAVEEG
Sbjct:  341 AIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEG 410          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_SALAR (60 kDa chaperonin OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=groL PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.369e-20
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 1
Query:   25 AVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            A+  RVA IR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AAVEEG
Sbjct:  341 AIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEG 410          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_SALA4 (60 kDa chaperonin OS=Salmonella agona (strain SL483) GN=groL PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.369e-20
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 1
Query:   25 AVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            A+  RVA IR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AAVEEG
Sbjct:  341 AIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEG 410          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_LACGA (60 kDa chaperonin OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=groL PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.369e-20
Identity = 48/73 (65.75%), Postives = 62/73 (84.93%), Query Frame = 1
Query:   16 TQDAVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            ++DA+S+RV  I+  I +   D++REKL ER+AKL+GGVAVI+VGA TETELKE+K R+EDALNAT+AAVEEG
Sbjct:  336 SKDAISERVDQIKKQIADTTSDFDREKLQERLAKLAGGVAVIKVGAATETELKERKYRIEDALNATRAAVEEG 408          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_LACBA (60 kDa chaperonin OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=groL PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.369e-20
Identity = 47/73 (64.38%), Postives = 62/73 (84.93%), Query Frame = 1
Query:   16 TQDAVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            ++D ++ RVA I+  IE+   D++R+KL ER+AKLSGGVAV++VGA TETELKE+K R+EDALNAT+AAVEEG
Sbjct:  336 SKDQIAARVAEIKGQIEDTTSDFDRDKLKERLAKLSGGVAVVRVGAATETELKERKYRIEDALNATRAAVEEG 408          
The following BLAST results are available for this feature:
BLAST of CX291297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_SALPA1.369e-2071.4360 kDa chaperonin OS=Salmonella paratyphi A GN=gro... [more]
CH60_SALHS1.369e-2071.4360 kDa chaperonin OS=Salmonella heidelberg (strain... [more]
CH60_SALG21.369e-2071.4360 kDa chaperonin OS=Salmonella gallinarum (strain... [more]
CH60_SALEP1.369e-2071.4360 kDa chaperonin OS=Salmonella enteritidis PT4 (s... [more]
CH60_SALDC1.369e-2071.4360 kDa chaperonin OS=Salmonella dublin (strain CT_... [more]
CH60_SALCH1.369e-2071.4360 kDa chaperonin OS=Salmonella choleraesuis GN=gr... [more]
CH60_SALAR1.369e-2071.4360 kDa chaperonin OS=Salmonella arizonae (strain A... [more]
CH60_SALA41.369e-2071.4360 kDa chaperonin OS=Salmonella agona (strain SL48... [more]
CH60_LACGA1.369e-2065.7560 kDa chaperonin OS=Lactobacillus gasseri (strain... [more]
CH60_LACBA1.369e-2064.3860 kDa chaperonin OS=Lactobacillus brevis (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC03006D09SK OF2 Citrus clementina cDNA clone C03006D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291297 ID=CX291297; Name=CX291297; organism=Citrus clementina; type=EST; length=235bp
TTCGGCACGAGGAGCACCCAGGATGCAGTGAGCAAACGAGTGGCGCACAT
CAGAACTCTAATTGAGAACGCTGAGCAAGACTATGAAAGGGAGAAGCTTA
ATGAAAGAATTGCTAAACTGTCAGGTGGTGTTGCTGTCATACAGGTTGGA
GCTCAAACTGAGACAGAGCTTAAAGAGAAGAAGTTGAGAGTCGAAGATGC
TCTTAATGCAACAAAGGCTGCAGTTGAGGAAGGTA
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