CX291297 | Citrus Genome Database

Overview


Name	CX291297
Unique Name	CX291297
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	235

Libraries


Library Name	Type
OF2	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_ESCF3 (60 kDa chaperonin OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=groL PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.369e-20
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 1

Query:   25 AVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            A+  RVA IR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AAVEEG
Sbjct:  341 AIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEG 410

[Close]

BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_ECOUT (60 kDa chaperonin OS=Escherichia coli (strain UTI89 / UPEC) GN=groL PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.369e-20
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 1

Query:   25 AVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            A+  RVA IR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AAVEEG
Sbjct:  341 AIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEG 410

[Close]

BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_ECOSM (60 kDa chaperonin OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=groL PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.369e-20
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 1

Query:   25 AVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            A+  RVA IR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AAVEEG
Sbjct:  341 AIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEG 410

[Close]

BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_ECOSE (60 kDa chaperonin OS=Escherichia coli (strain SE11) GN=groL PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.369e-20
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 1

Query:   25 AVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            A+  RVA IR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AAVEEG
Sbjct:  341 AIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEG 410

[Close]

BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_ECOLU (60 kDa chaperonin OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=groL PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.369e-20
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 1

Query:   25 AVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            A+  RVA IR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AAVEEG
Sbjct:  341 AIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEG 410

[Close]

BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_ECOLI (60 kDa chaperonin OS=Escherichia coli (strain K12) GN=groL PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.369e-20
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 1

Query:   25 AVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            A+  RVA IR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AAVEEG
Sbjct:  341 AIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEG 410

[Close]

BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_ECOLC (60 kDa chaperonin OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=groL PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.369e-20
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 1

Query:   25 AVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            A+  RVA IR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AAVEEG
Sbjct:  341 AIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEG 410

[Close]

BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_ECOL6 (60 kDa chaperonin OS=Escherichia coli O6 GN=groL PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.369e-20
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 1

Query:   25 AVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            A+  RVA IR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AAVEEG
Sbjct:  341 AIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEG 410

[Close]

BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_ECOL5 (60 kDa chaperonin OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=groL PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.369e-20
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 1

Query:   25 AVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            A+  RVA IR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AAVEEG
Sbjct:  341 AIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEG 410

[Close]

BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_ECOHS (60 kDa chaperonin OS=Escherichia coli O9:H4 (strain HS) GN=groL PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.369e-20
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 1

Query:   25 AVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            A+  RVA IR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AAVEEG
Sbjct:  341 AIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEG 410

The following BLAST results are available for this feature:

BLAST of CX291297 vs. ExPASy Swiss-Prot

BLAST of CX291297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
CH60_ESCF3	1.369e-20	71.43	60 kDa chaperonin OS=Escherichia fergusonii (strai...	[more]
CH60_ECOUT	1.369e-20	71.43	60 kDa chaperonin OS=Escherichia coli (strain UTI8...	[more]
CH60_ECOSM	1.369e-20	71.43	60 kDa chaperonin OS=Escherichia coli (strain SMS-...	[more]
CH60_ECOSE	1.369e-20	71.43	60 kDa chaperonin OS=Escherichia coli (strain SE11...	[more]
CH60_ECOLU	1.369e-20	71.43	60 kDa chaperonin OS=Escherichia coli O17:K52:H18 ...	[more]
CH60_ECOLI	1.369e-20	71.43	60 kDa chaperonin OS=Escherichia coli (strain K12)...	[more]
CH60_ECOLC	1.369e-20	71.43	60 kDa chaperonin OS=Escherichia coli (strain ATCC...	[more]
CH60_ECOL6	1.369e-20	71.43	60 kDa chaperonin OS=Escherichia coli O6 GN=groL P...	[more]
CH60_ECOL5	1.369e-20	71.43	60 kDa chaperonin OS=Escherichia coli O6:K15:H31 (...	[more]
CH60_ECOHS	1.369e-20	71.43	60 kDa chaperonin OS=Escherichia coli O9:H4 (strai...	[more]

Pages

Properties


Property Name	Value
Genbank description	C03006D09SK OF2 Citrus clementina cDNA clone C03006D09, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX291297 ID=CX291297; Name=CX291297; organism=Citrus clementina; type=EST; length=235bp
TTCGGCACGAGGAGCACCCAGGATGCAGTGAGCAAACGAGTGGCGCACAT
CAGAACTCTAATTGAGAACGCTGAGCAAGACTATGAAAGGGAGAAGCTTA
ATGAAAGAATTGCTAAACTGTCAGGTGGTGTTGCTGTCATACAGGTTGGA
GCTCAAACTGAGACAGAGCTTAAAGAGAAGAAGTTGAGAGTCGAAGATGC
TCTTAATGCAACAAAGGCTGCAGTTGAGGAAGGTA