CX291399

Overview
NameCX291399
Unique NameCX291399
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length632
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291399 vs. ExPASy Swiss-Prot
Match: MPPB_BOVIN (Mitochondrial-processing peptidase subunit beta OS=Bos taurus GN=PMPCB PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.711e-23
Identity = 49/100 (49.00%), Postives = 73/100 (73.00%), Query Frame = 2
Query:    2 KLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYW 301
            +L   V+E++V RA+N LK+++LL +DG++P+ EDIGRQ+L Y RRIP  EL ARID+V+A  ++ V  ++IYD+  A+AA+GPI+ LPD+N       W
Sbjct:  388 RLCTSVTESEVARAKNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVNAEIIREVCTKYIYDKSPAVAAVGPIEQLPDFNQICSNMRW 487          
BLAST of CX291399 vs. ExPASy Swiss-Prot
Match: MPPB_NEUCR (Mitochondrial-processing peptidase subunit beta OS=Neurospora crassa GN=pep PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.819e-19
Identity = 51/91 (56.04%), Postives = 69/91 (75.82%), Query Frame = 2
Query:    2 KLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDY 274
            +L   VSEA+V RA+ QLK+S+LL +DGT+ VAEDIGRQ++T GRR+  AE+   ID+V A  V   AN+ I+D+DIAI+A+G I+GL DY
Sbjct:  374 RLCSNVSEAEVERAKAQLKASILLSLDGTTAVAEDIGRQIVTTGRRMSPAEIERIIDAVSAKDVMDFANKKIWDQDIAISAVGSIEGLFDY 464          
BLAST of CX291399 vs. ExPASy Swiss-Prot
Match: MPPB_SCHPO (Probable mitochondrial-processing peptidase subunit beta OS=Schizosaccharomyces pombe GN=qcr1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.540e-18
Identity = 48/97 (49.48%), Postives = 67/97 (69.07%), Query Frame = 2
Query:   20 SEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNRY 310
            + A+V RA+ QL++SLLL +D T+ +AEDIGRQLLT GRR+   E+  RI  +    V RVA+  I+D+DIA++A+G I+GL DYN  R     NR+
Sbjct:  361 TRAEVERAKAQLRASLLLSLDSTTAIAEDIGRQLLTTGRRMSPQEVDLRIGQITEKDVARVASEMIWDKDIAVSAVGSIEGLLDYNRIRSSISMNRW 457          
BLAST of CX291399 vs. ExPASy Swiss-Prot
Match: MPPB_LENED (Mitochondrial-processing peptidase subunit beta OS=Lentinula edodes GN=mppB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.011e-18
Identity = 43/95 (45.26%), Postives = 68/95 (71.58%), Query Frame = 2
Query:    2 KLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFR 286
            +++   +E +V RA++QLK+ LLL +DGT+ VAEDIGRQ++T G+R+  A++   +D+V    +KRVA ++++D+D A+AA G I GL DY   R
Sbjct:  364 RMSIAPTEGEVERAKSQLKAGLLLSLDGTTAVAEDIGRQIVTSGKRMTPAQIENAVDAVSVDDIKRVAQKYLWDKDFALAAFGNIDGLKDYGRIR 458          
BLAST of CX291399 vs. ExPASy Swiss-Prot
Match: MPPB_DICDI (Mitochondrial-processing peptidase subunit beta OS=Dictyostelium discoideum GN=mppB PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.468e-17
Identity = 42/102 (41.18%), Postives = 66/102 (64.71%), Query Frame = 2
Query:    2 KLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNR 307
            ++A   ++ +V R + +L ++ L+  DGTS V E IGRQ+LT GRR+   E++ RI+ +  + V+RVA+  + D   A+ A+GPI   PDYN+ +  TYWNR
Sbjct:  367 RIATSCNKNEVERNKQKLLATTLMQYDGTSKVCEGIGRQILTLGRRLSPFEVYTRINEITVADVQRVASTLLRDVSPAVTAIGPIANYPDYNFVKGWTYWNR 468          
BLAST of CX291399 vs. ExPASy Swiss-Prot
Match: MPPB_YEAST (Mitochondrial-processing peptidase subunit beta OS=Saccharomyces cerevisiae GN=MAS1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.069e-11
Identity = 30/93 (32.26%), Postives = 62/93 (66.67%), Query Frame = 2
Query:   14 RVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRR 292
            ++S+A+V RA+ QLK++LLL +DG++ + EDIGRQ++T G+R+   E+F ++D +    +   AN  + ++ +++ A+G    +P+ ++   +
Sbjct:  367 KISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLSPEEVFEQVDKITKDDIIMWANYRLQNKPVSMVALGNTSTVPNVSYIEEK 459          
The following BLAST results are available for this feature:
BLAST of CX291399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
MPPB_BOVIN2.711e-2349.00Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_NEUCR1.819e-1956.04Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_SCHPO1.540e-1849.48Probable mitochondrial-processing peptidase subuni... [more]
MPPB_LENED2.011e-1845.26Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_DICDI6.468e-1741.18Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_YEAST1.069e-1132.26Mitochondrial-processing peptidase subunit beta OS... [more]

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Properties
Property NameValue
Genbank descriptionC03007E06SK OF2 Citrus clementina cDNA clone C03007E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291399 ID=CX291399; Name=CX291399; organism=Citrus clementina; type=EST; length=632bp
CAAGTTAGCTTATCGGGTTTCAGAAGCTGATGTCACTCGTGCCCGTAATC
AGTTGAAATCATCCCTGTTGCTTCACATTGATGGAACAAGCCCTGTAGCT
GAAGATATTGGACGCCAGCTGCTTACATATGGTCGAAGAATCCCATTTGC
TGAATTGTTTGCTAGGATAGACTCCGTAGATGCAAGCACTGTCAAGCGCG
TTGCAAACAGATTTATTTACGACAGGGATATCGCAATTGCTGCAATGGGT
CCAATTCAAGGTTTACCCGACTACAACTGGTTCAGACGCAGAACCTACTG
GAATAGATACTAAGTTATCTCATGGTTGTTCATTACTGCATCCCCGCCTT
CCTGGGCGGAGATTTCAAACAATTTTTGGGTTGCAATTTACACAATCAAT
GCCCTTGGGAGAGGCTTCAGGGCTATGGTATTTTATTGAATTCTTTTCTA
GCTCTTGCTTCTGTAACTTCATAATTTGTTCAGGAAATAAGTAAGCTGTC
TTCACTCTTCAGTGATTTGGCCCTCGGATTTTCATTGCTTTGAGCTTAAC
AGCTCAAGTGACAGCTTTGAATGATGATAAATTTTCAGCTGCATCACATC
ATATTGCCTTTGGTTTTCAAGGGGCATTATGT
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