CX291423

Overview
NameCX291423
Unique NameCX291423
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length214
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291423 vs. ExPASy Swiss-Prot
Match: G3P_ONCVO (Glyceraldehyde 3-phosphate-dehydrogenase OS=Onchocerca volvulus PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.548e-11
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 142
            FVGD  SSIFDA A I+L+  FVKL++WYDNE+GYS RVVDLI + A
Sbjct:  291 FVGDPHSSIFDALACISLNPNFVKLIAWYDNEYGYSNRVVDLISYNA 337          
BLAST of CX291423 vs. ExPASy Swiss-Prot
Match: G3P_CHLPN (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia pneumoniae GN=gap PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.548e-11
Identity = 30/48 (62.50%), Postives = 39/48 (81.25%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 145
            F+G   SSIFDA AGIAL+ +F KLV+WYDNE GY+TR+VDL+ ++ K
Sbjct:  285 FIGSEYSSIFDALAGIALNDRFFKLVAWYDNETGYATRIVDLLEYVEK 332          
BLAST of CX291423 vs. ExPASy Swiss-Prot
Match: G3PG_TRYBB (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Trypanosoma brucei brucei PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 2.548e-11
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKA----GIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 142
            F+ DSRSSI+D+KA     +   ++F K+VSWYDNEWGYS RVVDL+ HMA
Sbjct:  301 FISDSRSSIYDSKATLQNNLPNERRFFKIVSWYDNEWGYSHRVVDLVRHMA 351          
BLAST of CX291423 vs. ExPASy Swiss-Prot
Match: G3P1_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Caenorhabditis elegans GN=gpd-1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.548e-11
Identity = 33/47 (70.21%), Postives = 38/47 (80.85%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 142
            FV D  SSIFDA A I+L+  FVKLVSWYDNE+GYS RVVDLI ++A
Sbjct:  292 FVSDPHSSIFDAGACISLNPNFVKLVSWYDNEYGYSNRVVDLIGYIA 338          
BLAST of CX291423 vs. ExPASy Swiss-Prot
Match: G3P_BRUMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia malayi GN=G3PD PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.347e-11
Identity = 30/47 (63.83%), Postives = 39/47 (82.98%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 142
            F GD+ SSIFD+ A I+L+  FVKL++WYDNE+GYS RVVDLI ++A
Sbjct:  291 FTGDTHSSIFDSLACISLNPNFVKLIAWYDNEYGYSNRVVDLISYIA 337          
BLAST of CX291423 vs. ExPASy Swiss-Prot
Match: G3PG_TRYCR (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.347e-11
Identity = 30/51 (58.82%), Postives = 39/51 (76.47%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKA----GIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 142
            F+ D+RSSI+D+KA     +   ++F K+VSWYDNEWGYS RVVDL+ HMA
Sbjct:  301 FINDNRSSIYDSKATLQNNLPKERRFFKIVSWYDNEWGYSHRVVDLVRHMA 351          
BLAST of CX291423 vs. ExPASy Swiss-Prot
Match: G3P_ECHMU (Glyceraldehyde-3-phosphate dehydrogenase OS=Echinococcus multilocularis PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.677e-11
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 145
            F+  + SS FDA+AGIAL+  FVKL++WYDNE+GYS RVVDLI +M K
Sbjct:  286 FLSTTCSSTFDARAGIALNDTFVKLIAWYDNEFGYSCRVVDLISYMFK 333          
BLAST of CX291423 vs. ExPASy Swiss-Prot
Match: G3P4_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 4 OS=Caenorhabditis elegans GN=gpd-4 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.414e-11
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 142
            FV D  SSIFD  A I+L+  FVKLVSWYDNE+GYS RVVDLI ++A
Sbjct:  292 FVSDPHSSIFDTGACISLNPNFVKLVSWYDNEYGYSNRVVDLIGYIA 338          
BLAST of CX291423 vs. ExPASy Swiss-Prot
Match: G3P_BUCAI (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=gapA PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.683e-11
Identity = 28/48 (58.33%), Postives = 41/48 (85.42%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 145
            F G+  +SIFDAKAG++L+K FVKL++WYDNE GYS++V+DL+  ++K
Sbjct:  284 FNGEELTSIFDAKAGLSLNKNFVKLIAWYDNETGYSSKVLDLVSLVSK 331          
The following BLAST results are available for this feature:
BLAST of CX291423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
G3P_ONCVO2.548e-1168.09Glyceraldehyde 3-phosphate-dehydrogenase OS=Onchoc... [more]
G3P_CHLPN2.548e-1162.50Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]
G3PG_TRYBB2.548e-1160.78Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3P1_CAEEL2.548e-1170.21Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Caen... [more]
G3P_BRUMA4.347e-1163.83Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia... [more]
G3PG_TRYCR4.347e-1158.82Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3P_ECHMU5.677e-1164.58Glyceraldehyde-3-phosphate dehydrogenase OS=Echino... [more]
G3P4_CAEEL7.414e-1168.09Glyceraldehyde-3-phosphate dehydrogenase 4 OS=Caen... [more]
G3P_BUCAI9.683e-1158.33Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]

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Properties
Property NameValue
Genbank descriptionC03007G06SK OF2 Citrus clementina cDNA clone C03007G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291423 ID=CX291423; Name=CX291423; organism=Citrus clementina; type=EST; length=214bp
CTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCAAGGCTGGTATTG
CTTTGAGTAAGAAATTTGTGAAGCTTGTCTCATGGTATGACAATGAGTGG
GGCTACAGTACTCGTGTGGTGGATTTGATTGTCCACATGGCGAAGACCCA
GTAACTTACTCGGCGTGGCTTGAGTATGTAACACGCTTAGTTGTGCTAAG
TGTGGTGTTTCTTT
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