CX291429

Overview
NameCX291429
Unique NameCX291429
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length668
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291429 vs. ExPASy Swiss-Prot
Match: NAGAB_HUMAN (Alpha-N-acetylgalactosaminidase OS=Homo sapiens GN=NAGA PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 6.037e-32
Identity = 69/146 (47.26%), Postives = 85/146 (58.22%), Query Frame = 1
Query:  253 LIDNGLGRAPPMGWNSWNHFGCNIQ----------EKLIRETADAMVTSGLAALGYQYINLDDCWAELNRDSKGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLQYDNCFNT 660
            ++DNGL + PPMGW +W  F CNI           E+L  E AD M   G   +GY Y+N+DDCW    RD+ G  +P    FP GI  LADYVH+ GLKLGIY+D G  TC      +L    QDA+TFA W VD L+ D CF+T
Sbjct:   17 MLDNGLLQTPPMGWLAWERFRCNINCDEDPKNCISEQLFMEMADRMAQDGWRDMGYTYLNIDDCWIG-GRDASGRLMPDPKRFPHGIPFLADYVHSLGLKLGIYADMGNFTCMGYPGTTLDKVVQDAQTFAEWKVDMLKLDGCFST 161          
BLAST of CX291429 vs. ExPASy Swiss-Prot
Match: NAGAB_MOUSE (Alpha-N-acetylgalactosaminidase OS=Mus musculus GN=Naga PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 2.996e-31
Identity = 67/146 (45.89%), Postives = 83/146 (56.85%), Query Frame = 1
Query:  253 LIDNGLGRAPPMGWNSWNHFGCNIQ----------EKLIRETADAMVTSGLAALGYQYINLDDCWAELNRDSKGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLQYDNCFNT 660
            +++NGL R PPMGW +W  F CNI           E+L  E AD +   G   LGY Y+N+DDCW    RD+ G  +P    FP GI  LADY H+ GLKLGIY D G  TC      +L   E DA+TFA W VD L+ D CF++
Sbjct:   17 MLENGLLRTPPMGWLAWERFRCNIDCVEDPKNCISERLFMEMADRLAQDGWRDLGYVYLNIDDCWIG-GRDASGRLIPDPKRFPHGIAFLADYAHSLGLKLGIYEDMGKMTCMGYPGTTLDKVELDAETFAEWKVDMLKLDGCFSS 161          
BLAST of CX291429 vs. ExPASy Swiss-Prot
Match: NAGAB_RAT (Alpha-N-acetylgalactosaminidase OS=Rattus norvegicus GN=Naga PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.110e-31
Identity = 67/146 (45.89%), Postives = 82/146 (56.16%), Query Frame = 1
Query:  253 LIDNGLGRAPPMGWNSWNHFGCNIQ----------EKLIRETADAMVTSGLAALGYQYINLDDCWAELNRDSKGNFVPKASAFPAGIKALADYVHAKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFASWGVDYLQYDNCFNT 660
            +++NGL R PPMGW +W  F CNI           E+L  E AD +   G   LGY Y+N+DDCW    RD+ G  +P    FP GI  LADY H+ GLKLGIY D G  TC      +L   E DA TFA W VD L+ D C++T
Sbjct:   17 MLENGLLRTPPMGWLAWERFRCNINCEEDPKNCISERLFMEMADRLAQDGWRDLGYVYLNIDDCWIG-GRDATGRLIPDPKRFPHGIAFLADYAHSLGLKLGIYEDMGKMTCMGYPGTTLDKVELDAATFAEWKVDMLKLDGCYST 161          
The following BLAST results are available for this feature:
BLAST of CX291429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
NAGAB_HUMAN6.037e-3247.26Alpha-N-acetylgalactosaminidase OS=Homo sapiens GN... [more]
NAGAB_MOUSE2.996e-3145.89Alpha-N-acetylgalactosaminidase OS=Mus musculus GN... [more]
NAGAB_RAT5.110e-3145.89Alpha-N-acetylgalactosaminidase OS=Rattus norvegic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC03007G12SK OF2 Citrus clementina cDNA clone C03007G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291429 ID=CX291429; Name=CX291429; organism=Citrus clementina; type=EST; length=668bp
AGGACTCTATATAATATACATTCCACCTCCGCCTCTGAGCCAACTTCTAT
CTTCATTACTTTTTCTTTCGCATCTTCTTGTTCTGCTTATAGATAAATAA
ATATAAATCTATATACTCATATAGCCATGGATACTTCAGCCTCAGCCACG
ATGGCCGCCTTGTGTTTTTTCCTGATCTTAAATGCCGAAGCCGCTGCCGC
CGTCCGCCATGGCCAGAAGATAACAGGGGGTGGCAGAAATATTCGAAGGA
ATCTCATTGATAATGGACTTGGTCGAGCACCACCCATGGGATGGAATAGT
TGGAATCACTTCGGTTGCAACATTCAAGAGAAGCTGATTAGGGAAACAGC
CGATGCAATGGTGACATCTGGACTTGCTGCCTTAGGGTACCAATATATAA
ATTTAGATGATTGCTGGGCTGAACTTAATAGAGACTCCAAGGGAAATTTC
GTTCCTAAAGCTTCAGCATTTCCAGCTGGAATCAAAGCATTAGCAGATTA
TGTTCATGCCAAAGGGCTAAAGCTTGGAATTTATTCAGACGCTGGGACTC
AAACCTGCAGTAAAACTATGCCTGGATCTTTAGGCCACGAGGAACAAGAT
GCTAAAACCTTTGCTTCTTGGGGAGTTGATTACTTGCAGTATGATAATTG
CTTTAATACTGGTACAAG
back to top