CX291464
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_SYNJA (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=ndhA PE=3 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 4.232e-34 Identity = 69/108 (63.89%), Postives = 81/108 (75.00%), Query Frame = 2 Query: 356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLGWL 679 +SN L TV IV QS G WN+WRQPIGF++FLIS+LAE ER+PFDLPEAEEELVAGYQTEYSG+KF LFY+ SY NLL++SL VLYLGG + + WL Sbjct: 187 MSNGLDTVGIVEQQSGLGILSWNVWRQPIGFVIFLISALAETERIPFDLPEAEEELVAGYQTEYSGMKFALFYLGSYANLLLASLIAAVLYLGGWSFVVPVETIAAWL 294
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_SYNJB (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechococcus sp. GN=ndhA PE=3 SV=2) HSP 1 Score: 141.739 bits (356), Expect = 3.583e-33 Identity = 67/94 (71.28%), Postives = 77/94 (81.91%), Query Frame = 2 Query: 356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637 +SN L TV IV QS G WN+WRQPIGF++FLIS+LAE ER+PFDLPEAEEELVAGYQTEYSG+KF LFY+ SY NLL++SL VLYLGG Sbjct: 187 MSNGLDTVGIVEQQSGLGILSWNVWRQPIGFVIFLISALAETERIPFDLPEAEEELVAGYQTEYSGMKFALFYLGSYANLLLASLIAAVLYLGG 280
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_GLOVI (NAD(P)H-quinone oxidoreductase subunit 1 OS=Gloeobacter violaceus GN=ndhA PE=3 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 3.708e-30 Identity = 62/97 (63.92%), Postives = 79/97 (81.44%), Query Frame = 2 Query: 356 LSNSLSTVDIVVAQSKYG---FWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637 +S+SLSTVDIV Q G F+ WN+WRQPIGF++FLIS+LAE ER PFDLPEAE ELVAG+ TEY+G+KF LFY++ Y NL+++SL +VL+LGG Sbjct: 185 MSSSLSTVDIVEQQETLGLFSFFSWNIWRQPIGFVIFLISALAETERAPFDLPEAESELVAGHHTEYTGMKFALFYLSEYANLILASLIASVLFLGG 281
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_SALRD (NADH-quinone oxidoreductase subunit H OS=Salinibacter ruber (strain DSM 13855) GN=nuoH PE=3 SV=2) HSP 1 Score: 109.383 bits (272), Expect = 1.971e-23 Identity = 50/95 (52.63%), Postives = 70/95 (73.68%), Query Frame = 2 Query: 356 LSNSLSTVDIVVAQSKYG-FWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637 ++ SL+ ++IV QS G GWN R PIG ++F++++ AE R PFDLPEAEEELVAGY TEYSG+KFG+F++A Y+N ++S F+ L+ GG Sbjct: 164 IAGSLNFMEIVEHQSSGGALLGWNAVRNPIGCLIFIVTAFAETNRAPFDLPEAEEELVAGYHTEYSGMKFGMFFLAEYVNWFIASFFIVTLFFGG 258
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NQO8_RHOMR (NADH-quinone oxidoreductase subunit 8 OS=Rhodothermus marinus GN=nqo8 PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.081e-21 Identity = 47/94 (50.00%), Postives = 68/94 (72.34%), Query Frame = 2 Query: 359 SNSLSTVDIVVAQSK-YGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637 + SL+ IV AQ + GW+++ PIG ++F++++ AE RLPFDLPEAE+ELV GY TEYSG+KFG+F++A Y+NL V+S + L+ GG Sbjct: 165 AGSLNVSAIVEAQRDGWAILGWHVFTNPIGALIFIVTAFAETNRLPFDLPEAEQELVGGYHTEYSGMKFGMFFLAEYVNLFVASFVIATLFFGG 258
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH2_SYMTH (NADH-quinone oxidoreductase subunit H 2 OS=Symbiobacterium thermophilum GN=nuoH2 PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.412e-21 Identity = 51/94 (54.26%), Postives = 67/94 (71.28%), Query Frame = 2 Query: 356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637 ++ SL DIV+AQ + GF GW L+ Q IGFIV+LI+SLAE R PFDL EAE+ELVAG+ TEYSG ++ +F +A Y++L S L+LGG Sbjct: 174 MAGSLRLSDIVLAQQQRGFLGWFLFPQIIGFIVYLIASLAELNRAPFDLAEAEQELVAGHHTEYSGFRWAMFMLAEYIHLAAWSAIAATLFLGG 267
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH2_SYNFM (NADH-quinone oxidoreductase subunit H 2 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=nuoH2 PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 4.109e-21 Identity = 50/93 (53.76%), Postives = 67/93 (72.04%), Query Frame = 2 Query: 359 SNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637 + S S VDIV AQ KY F + QP+ F +F+IS++AE +R+PFDLPEAE EL AG+ TEYSG++FGLF++ Y+N+ V V VL+LGG Sbjct: 177 ARSFSLVDIVQAQEKYPF----ILTQPVAFAIFVISAMAEIKRIPFDLPEAENELGAGFHTEYSGMRFGLFFLGEYVNMQVLGGLVAVLFLGG 265
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH2_GEOSL (NADH-quinone oxidoreductase subunit H 2 OS=Geobacter sulfurreducens GN=nuoH2 PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 4.109e-21 Identity = 49/94 (52.13%), Postives = 65/94 (69.15%), Query Frame = 2 Query: 356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637 L+ SL DIV AQ W + QP+ F++FLIS AEC+R+PFD+PEAE ELVAG+ TEYSG++FGLF+V Y+N++V T +LGG Sbjct: 176 LAGSLRLSDIVAAQEGV----WFIAYQPVAFLIFLISIAAECKRIPFDIPEAEGELVAGFHTEYSGMRFGLFFVGEYINIIVLGGLATTFFLGG 265
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH1_GEOMG (NADH-quinone oxidoreductase subunit H 1 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=nuoH1 PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 4.109e-21 Identity = 49/94 (52.13%), Postives = 65/94 (69.15%), Query Frame = 2 Query: 356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637 L+ SL DIV AQ W + QP+ F++FLIS AEC+R+PFD+PEAE ELVAG+ TEYSG++FGLF+V Y+N++V T +LGG Sbjct: 176 LAGSLRLSDIVAAQEGI----WFIVYQPLAFVIFLISIAAECKRIPFDIPEAEGELVAGFHTEYSGMRFGLFFVGEYINIIVLGGLATTFFLGG 265
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_GEOKA (NADH-quinone oxidoreductase subunit H OS=Geobacillus kaustophilus GN=nuoH PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 7.008e-21 Identity = 50/108 (46.30%), Postives = 70/108 (64.81%), Query Frame = 2 Query: 356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLGWL 679 L+ S++ VDIV AQ W ++ QP+ F++FLI+++AE R PFDLPEAE ELVAG+ EYSG ++ F +A Y+ L + VT+L+LGG H FLGW+ Sbjct: 175 LAGSMNLVDIVAAQKDV----WFIFAQPLAFLIFLIAAVAELNRTPFDLPEAESELVAGFHVEYSGFRWAFFMLAEYVYLFAMAALVTILFLGG----WHPVAFLGWI 274 The following BLAST results are available for this feature:
BLAST of CX291464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX291464 ID=CX291464; Name=CX291464; organism=Citrus clementina; type=EST; length=707bpback to top |