CX291464

Overview
NameCX291464
Unique NameCX291464
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_SYNJA (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=ndhA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.232e-34
Identity = 69/108 (63.89%), Postives = 81/108 (75.00%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLGWL 679
            +SN L TV IV  QS  G   WN+WRQPIGF++FLIS+LAE ER+PFDLPEAEEELVAGYQTEYSG+KF LFY+ SY NLL++SL   VLYLGG +  +       WL
Sbjct:  187 MSNGLDTVGIVEQQSGLGILSWNVWRQPIGFVIFLISALAETERIPFDLPEAEEELVAGYQTEYSGMKFALFYLGSYANLLLASLIAAVLYLGGWSFVVPVETIAAWL 294          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_SYNJB (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechococcus sp. GN=ndhA PE=3 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 3.583e-33
Identity = 67/94 (71.28%), Postives = 77/94 (81.91%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            +SN L TV IV  QS  G   WN+WRQPIGF++FLIS+LAE ER+PFDLPEAEEELVAGYQTEYSG+KF LFY+ SY NLL++SL   VLYLGG
Sbjct:  187 MSNGLDTVGIVEQQSGLGILSWNVWRQPIGFVIFLISALAETERIPFDLPEAEEELVAGYQTEYSGMKFALFYLGSYANLLLASLIAAVLYLGG 280          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_GLOVI (NAD(P)H-quinone oxidoreductase subunit 1 OS=Gloeobacter violaceus GN=ndhA PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.708e-30
Identity = 62/97 (63.92%), Postives = 79/97 (81.44%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYG---FWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            +S+SLSTVDIV  Q   G   F+ WN+WRQPIGF++FLIS+LAE ER PFDLPEAE ELVAG+ TEY+G+KF LFY++ Y NL+++SL  +VL+LGG
Sbjct:  185 MSSSLSTVDIVEQQETLGLFSFFSWNIWRQPIGFVIFLISALAETERAPFDLPEAESELVAGHHTEYTGMKFALFYLSEYANLILASLIASVLFLGG 281          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_SALRD (NADH-quinone oxidoreductase subunit H OS=Salinibacter ruber (strain DSM 13855) GN=nuoH PE=3 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.971e-23
Identity = 50/95 (52.63%), Postives = 70/95 (73.68%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYG-FWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            ++ SL+ ++IV  QS  G   GWN  R PIG ++F++++ AE  R PFDLPEAEEELVAGY TEYSG+KFG+F++A Y+N  ++S F+  L+ GG
Sbjct:  164 IAGSLNFMEIVEHQSSGGALLGWNAVRNPIGCLIFIVTAFAETNRAPFDLPEAEEELVAGYHTEYSGMKFGMFFLAEYVNWFIASFFIVTLFFGG 258          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NQO8_RHOMR (NADH-quinone oxidoreductase subunit 8 OS=Rhodothermus marinus GN=nqo8 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.081e-21
Identity = 47/94 (50.00%), Postives = 68/94 (72.34%), Query Frame = 2
Query:  359 SNSLSTVDIVVAQSK-YGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            + SL+   IV AQ   +   GW+++  PIG ++F++++ AE  RLPFDLPEAE+ELV GY TEYSG+KFG+F++A Y+NL V+S  +  L+ GG
Sbjct:  165 AGSLNVSAIVEAQRDGWAILGWHVFTNPIGALIFIVTAFAETNRLPFDLPEAEQELVGGYHTEYSGMKFGMFFLAEYVNLFVASFVIATLFFGG 258          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH2_SYMTH (NADH-quinone oxidoreductase subunit H 2 OS=Symbiobacterium thermophilum GN=nuoH2 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.412e-21
Identity = 51/94 (54.26%), Postives = 67/94 (71.28%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            ++ SL   DIV+AQ + GF GW L+ Q IGFIV+LI+SLAE  R PFDL EAE+ELVAG+ TEYSG ++ +F +A Y++L   S     L+LGG
Sbjct:  174 MAGSLRLSDIVLAQQQRGFLGWFLFPQIIGFIVYLIASLAELNRAPFDLAEAEQELVAGHHTEYSGFRWAMFMLAEYIHLAAWSAIAATLFLGG 267          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH2_SYNFM (NADH-quinone oxidoreductase subunit H 2 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=nuoH2 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.109e-21
Identity = 50/93 (53.76%), Postives = 67/93 (72.04%), Query Frame = 2
Query:  359 SNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            + S S VDIV AQ KY F    +  QP+ F +F+IS++AE +R+PFDLPEAE EL AG+ TEYSG++FGLF++  Y+N+ V    V VL+LGG
Sbjct:  177 ARSFSLVDIVQAQEKYPF----ILTQPVAFAIFVISAMAEIKRIPFDLPEAENELGAGFHTEYSGMRFGLFFLGEYVNMQVLGGLVAVLFLGG 265          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH2_GEOSL (NADH-quinone oxidoreductase subunit H 2 OS=Geobacter sulfurreducens GN=nuoH2 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.109e-21
Identity = 49/94 (52.13%), Postives = 65/94 (69.15%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            L+ SL   DIV AQ       W +  QP+ F++FLIS  AEC+R+PFD+PEAE ELVAG+ TEYSG++FGLF+V  Y+N++V     T  +LGG
Sbjct:  176 LAGSLRLSDIVAAQEGV----WFIAYQPVAFLIFLISIAAECKRIPFDIPEAEGELVAGFHTEYSGMRFGLFFVGEYINIIVLGGLATTFFLGG 265          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH1_GEOMG (NADH-quinone oxidoreductase subunit H 1 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=nuoH1 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.109e-21
Identity = 49/94 (52.13%), Postives = 65/94 (69.15%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            L+ SL   DIV AQ       W +  QP+ F++FLIS  AEC+R+PFD+PEAE ELVAG+ TEYSG++FGLF+V  Y+N++V     T  +LGG
Sbjct:  176 LAGSLRLSDIVAAQEGI----WFIVYQPLAFVIFLISIAAECKRIPFDIPEAEGELVAGFHTEYSGMRFGLFFVGEYINIIVLGGLATTFFLGG 265          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_GEOKA (NADH-quinone oxidoreductase subunit H OS=Geobacillus kaustophilus GN=nuoH PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.008e-21
Identity = 50/108 (46.30%), Postives = 70/108 (64.81%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLGWL 679
            L+ S++ VDIV AQ       W ++ QP+ F++FLI+++AE  R PFDLPEAE ELVAG+  EYSG ++  F +A Y+ L   +  VT+L+LGG     H   FLGW+
Sbjct:  175 LAGSMNLVDIVAAQKDV----WFIFAQPLAFLIFLIAAVAELNRTPFDLPEAESELVAGFHVEYSGFRWAFFMLAEYVYLFAMAALVTILFLGG----WHPVAFLGWI 274          
The following BLAST results are available for this feature:
BLAST of CX291464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU1C_SYNJA4.232e-3463.89NAD(P)H-quinone oxidoreductase subunit 1 OS=Synech... [more]
NU1C_SYNJB3.583e-3371.28NAD(P)H-quinone oxidoreductase subunit 1 OS=Synech... [more]
NU1C_GLOVI3.708e-3063.92NAD(P)H-quinone oxidoreductase subunit 1 OS=Gloeob... [more]
NUOH_SALRD1.971e-2352.63NADH-quinone oxidoreductase subunit H OS=Salinibac... [more]
NQO8_RHOMR1.081e-2150.00NADH-quinone oxidoreductase subunit 8 OS=Rhodother... [more]
NUOH2_SYMTH1.412e-2154.26NADH-quinone oxidoreductase subunit H 2 OS=Symbiob... [more]
NUOH2_SYNFM4.109e-2153.76NADH-quinone oxidoreductase subunit H 2 OS=Syntrop... [more]
NUOH2_GEOSL4.109e-2152.13NADH-quinone oxidoreductase subunit H 2 OS=Geobact... [more]
NUOH1_GEOMG4.109e-2152.13NADH-quinone oxidoreductase subunit H 1 OS=Geobact... [more]
NUOH_GEOKA7.008e-2146.30NADH-quinone oxidoreductase subunit H OS=Geobacill... [more]

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Properties
Property NameValue
Genbank descriptionC03008G11SK OF2 Citrus clementina cDNA clone C03008G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291464 ID=CX291464; Name=CX291464; organism=Citrus clementina; type=EST; length=707bp
GTAATCGAAAATAAAAGGATGGGTTGAACTATCGAGTGATATTTCTACAA
GAGTATTTTATTGAAGGGTTGATTAAGTTATTACTCAACACAGAAAATTT
GAAATTCGTAAAGGATGAGATTAATTCAGAAATACTGTTTTTTTATCCTT
AGAGCAGACAGAATTCCAGTGGTATAATTGGGGATCCTCCGCTAGATTTT
GACTTTATCCATCCTATAACCATATCAAAATCAAAATAACTAATACCGGT
CCGGTCCTTACATTTATTTGTGGCCCTGAGGAGCCGTATGAGGTGAAAAT
CTCATGTACGGTTTTGTAATAGCGATGGAAACCGTAATGTTACCACCGAC
TATGATTATCTAACAGTTTAAGTACAGTTGATATAGTTGTGGCGCAATCA
AAATATGGTTTTTGGGGGTGGAATTTGTGGCGTCAACCTATAGGGTTTAT
CGTTTTTCTAATTTCTTCCCTAGCGGAATGCGAGAGATTACCTTTTGATT
TACCAGAAGCGGAAGAAGAATTAGTAGCCGGTTATCAAACCGAATATTCA
GGAATCAAATTTGGTTTATTTTACGTTGCTTCCTATCTAAATCTACTAGT
TTCCTCATTATTTGTAACAGTTCTTTACTTGGGAGGTTCGAATCTTTCCA
TTCATACATATTTGTTCCTGGGCTGGTTGAAATAAATAAGCGGATGGAAT
CTTTGGA
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