CX291464

Overview
NameCX291464
Unique NameCX291464
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_LACSA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Lactuca sativa GN=ndhA PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.038e-48
Identity = 97/105 (92.38%), Postives = 100/105 (95.24%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFL 670
            LSNS STVDIV AQSKYGFWGWNLWRQPIGF+VFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG NLSI  Y+F+
Sbjct:  185 LSNSSSTVDIVEAQSKYGFWGWNLWRQPIGFLVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWNLSI-PYIFV 288          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_DRIGR (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Drimys granadensis GN=ndhA PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.038e-48
Identity = 96/105 (91.43%), Postives = 100/105 (95.24%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFL 670
            LSNS ST+DIV AQSKYGFWGWNLWRQPIGFIVF+ISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG NLSI  Y+F+
Sbjct:  185 LSNSSSTIDIVEAQSKYGFWGWNLWRQPIGFIVFIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWNLSI-PYIFI 288          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_CRUWA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Crucihimalaya wallichii GN=ndhA PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.038e-48
Identity = 93/99 (93.94%), Postives = 97/99 (97.98%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSI 652
            LSNSLSTVDIV AQSKYGFWGWNLWRQPIGFI+FLISSLAECERLPFDLPEAEEEL+AGYQTEYSGIKFGLFYVASYLNLL+SSLFVTVLYLGG N+SI
Sbjct:  185 LSNSLSTVDIVEAQSKYGFWGWNLWRQPIGFIIFLISSLAECERLPFDLPEAEEELIAGYQTEYSGIKFGLFYVASYLNLLISSLFVTVLYLGGWNISI 283          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_BARVE (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Barbarea verna GN=ndhA PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.038e-48
Identity = 93/99 (93.94%), Postives = 97/99 (97.98%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSI 652
            LSNSLSTVDIV AQSKYGFWGWNLWRQPIGFI+FLISSLAECERLPFDLPEAEEEL+AGYQTEYSGIKFGLFYVASYLNLL+SSLFVTVLYLGG N+SI
Sbjct:  185 LSNSLSTVDIVEAQSKYGFWGWNLWRQPIGFIIFLISSLAECERLPFDLPEAEEELIAGYQTEYSGIKFGLFYVASYLNLLISSLFVTVLYLGGWNISI 283          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_ACOCL (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Acorus calamus GN=ndhA PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.038e-48
Identity = 96/105 (91.43%), Postives = 100/105 (95.24%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFL 670
            LSNS STVDIV AQSKYGFWGWNLWRQPIGF+VFL+SSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG NLSI  Y+F+
Sbjct:  187 LSNSSSTVDIVEAQSKYGFWGWNLWRQPIGFLVFLVSSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWNLSI-PYIFI 290          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_AETCO (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Aethionema cordifolium GN=ndhA PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.355e-48
Identity = 93/99 (93.94%), Postives = 97/99 (97.98%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSI 652
            LSNSLSTVDIV AQSKYGFWGWNLWRQPIGFI+FLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLL+SSLFVTVLYLGG N+S+
Sbjct:  185 LSNSLSTVDIVEAQSKYGFWGWNLWRQPIGFIIFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLISSLFVTVLYLGGWNISL 283          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_PANGI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Panax ginseng GN=ndhA PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.770e-48
Identity = 95/99 (95.96%), Postives = 96/99 (96.97%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSI 652
            LSNS STVDIV AQSKYGFWGWNLWRQPIGFI+FLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG NLSI
Sbjct:  185 LSNSSSTVDIVEAQSKYGFWGWNLWRQPIGFIIFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWNLSI 283          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_EUCGG (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=ndhA PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.770e-48
Identity = 96/111 (86.49%), Postives = 101/111 (90.99%), Query Frame = 2
Query:  338 CYHRL*LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFL 670
            C   + LSNS STVDIV AQSKYGFWGWNLWRQPIGF +FLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG N+SI  Y+F+
Sbjct:  179 CVINISLSNSSSTVDIVEAQSKYGFWGWNLWRQPIGFFIFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWNISI-PYIFV 288          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_CAPBU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Capsella bursa-pastoris GN=ndhA PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.770e-48
Identity = 93/99 (93.94%), Postives = 96/99 (96.97%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSI 652
            LSNSLSTVDIV AQSKYGFWGWNLWRQPIGFI+FLISSLAECERLPFDLPEAEEEL+AGYQTEYSGIKFGLFYVASYLNLL+SSLFVTVLYLGG N SI
Sbjct:  185 LSNSLSTVDIVEAQSKYGFWGWNLWRQPIGFIIFLISSLAECERLPFDLPEAEEELIAGYQTEYSGIKFGLFYVASYLNLLISSLFVTVLYLGGWNFSI 283          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_CALFG (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Calycanthus floridus var. glaucus GN=ndhA PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.770e-48
Identity = 97/105 (92.38%), Postives = 99/105 (94.29%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFL 670
            LSNS STVDIV AQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG NL I  Y+F+
Sbjct:  185 LSNSSSTVDIVEAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWNLPI-PYIFI 288          
The following BLAST results are available for this feature:
BLAST of CX291464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU1C_LACSA1.038e-4892.38NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_DRIGR1.038e-4891.43NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_CRUWA1.038e-4893.94NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_BARVE1.038e-4893.94NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_ACOCL1.038e-4891.43NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_AETCO1.355e-4893.94NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_PANGI1.770e-4895.96NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_EUCGG1.770e-4886.49NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_CAPBU1.770e-4893.94NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_CALFG1.770e-4892.38NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionC03008G11SK OF2 Citrus clementina cDNA clone C03008G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291464 ID=CX291464; Name=CX291464; organism=Citrus clementina; type=EST; length=707bp
GTAATCGAAAATAAAAGGATGGGTTGAACTATCGAGTGATATTTCTACAA
GAGTATTTTATTGAAGGGTTGATTAAGTTATTACTCAACACAGAAAATTT
GAAATTCGTAAAGGATGAGATTAATTCAGAAATACTGTTTTTTTATCCTT
AGAGCAGACAGAATTCCAGTGGTATAATTGGGGATCCTCCGCTAGATTTT
GACTTTATCCATCCTATAACCATATCAAAATCAAAATAACTAATACCGGT
CCGGTCCTTACATTTATTTGTGGCCCTGAGGAGCCGTATGAGGTGAAAAT
CTCATGTACGGTTTTGTAATAGCGATGGAAACCGTAATGTTACCACCGAC
TATGATTATCTAACAGTTTAAGTACAGTTGATATAGTTGTGGCGCAATCA
AAATATGGTTTTTGGGGGTGGAATTTGTGGCGTCAACCTATAGGGTTTAT
CGTTTTTCTAATTTCTTCCCTAGCGGAATGCGAGAGATTACCTTTTGATT
TACCAGAAGCGGAAGAAGAATTAGTAGCCGGTTATCAAACCGAATATTCA
GGAATCAAATTTGGTTTATTTTACGTTGCTTCCTATCTAAATCTACTAGT
TTCCTCATTATTTGTAACAGTTCTTTACTTGGGAGGTTCGAATCTTTCCA
TTCATACATATTTGTTCCTGGGCTGGTTGAAATAAATAAGCGGATGGAAT
CTTTGGA
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