CX291464

Overview
NameCX291464
Unique NameCX291464
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_VITVI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Vitis vinifera GN=ndhA PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.312e-48
Identity = 97/105 (92.38%), Postives = 100/105 (95.24%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFL 670
            LSNS STVDIV AQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG +LSI  Y+F+
Sbjct:  185 LSNSSSTVDIVEAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWDLSI-PYIFV 288          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_MORIN (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Morus indica GN=ndhA PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.312e-48
Identity = 94/105 (89.52%), Postives = 100/105 (95.24%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFL 670
            LSNS STVDIV AQSKYGFWGWNLWRQPIGFI+FLISSLAECERLPFDLPEAEEEL+AGYQTEYSGIKFGLFYVASYLNLLVSSLFVT+LYLGG N+SI  Y+F+
Sbjct:  185 LSNSSSTVDIVEAQSKYGFWGWNLWRQPIGFIIFLISSLAECERLPFDLPEAEEELIAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTILYLGGWNISI-PYIFV 288          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_HELAN (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Helianthus annuus GN=ndhA PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.312e-48
Identity = 95/99 (95.96%), Postives = 96/99 (96.97%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSI 652
            LSNS STVDIV AQSKYGFWGWNLWRQPIGF+VFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG NLSI
Sbjct:  185 LSNSSSTVDIVEAQSKYGFWGWNLWRQPIGFLVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWNLSI 283          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_DAUCA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Daucus carota GN=ndhA PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.312e-48
Identity = 95/99 (95.96%), Postives = 96/99 (96.97%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSI 652
            LSNS STVDIV AQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG NLS+
Sbjct:  185 LSNSSSTVDIVEAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWNLSL 283          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_ARAHI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Arabis hirsuta GN=ndhA PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.312e-48
Identity = 91/99 (91.92%), Postives = 97/99 (97.98%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSI 652
            LSNSLSTVDIV AQSKYGFWGWNLWRQPIGFI+FLISSLAECERLPFDLPEAEEEL+AGYQTEYSGIKFGLFYVASY+NLL+SSLFVT+LYLGG N+SI
Sbjct:  185 LSNSLSTVDIVEAQSKYGFWGWNLWRQPIGFIIFLISSLAECERLPFDLPEAEEELIAGYQTEYSGIKFGLFYVASYINLLISSLFVTILYLGGWNISI 283          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_NUPAD (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Nuphar advena GN=ndhA PE=3 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 3.019e-48
Identity = 94/99 (94.95%), Postives = 96/99 (96.97%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSI 652
            LSNS STVDIV AQSKYGFWGWNLWRQPIGFIVF+ISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVT+LYLGG NLSI
Sbjct:  183 LSNSSSTVDIVEAQSKYGFWGWNLWRQPIGFIVFIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTILYLGGWNLSI 281          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_DRANE (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Draba nemorosa GN=ndhA PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.019e-48
Identity = 91/99 (91.92%), Postives = 97/99 (97.98%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSI 652
            LSNSLSTVDIV AQSKYGFWGWNLWRQPIGFI+FLISSLAECERLPFDLPEAEEEL+AGYQTEYSGIKFGLFYVASYLNLL+S+LFVT+LYLGG N+SI
Sbjct:  185 LSNSLSTVDIVEAQSKYGFWGWNLWRQPIGFIIFLISSLAECERLPFDLPEAEEELIAGYQTEYSGIKFGLFYVASYLNLLISALFVTILYLGGWNISI 283          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_GOSHI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Gossypium hirsutum GN=ndhA PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.943e-48
Identity = 96/104 (92.31%), Postives = 99/104 (95.19%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLF 667
            LSNS STVDIV AQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLL+SSLFVTVLYLGG N+SI  Y+F
Sbjct:  185 LSNSSSTVDIVEAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLLSSLFVTVLYLGGWNISI-PYVF 287          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_OENEH (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Oenothera elata subsp. hookeri GN=ndhA PE=3 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 5.150e-48
Identity = 95/105 (90.48%), Postives = 100/105 (95.24%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFL 670
            LSNS STVDIV AQSKYG WGWNLWRQPIGF+VFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG N+SI +Y+F+
Sbjct:  185 LSNSSSTVDIVEAQSKYGLWGWNLWRQPIGFLVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWNISI-SYIFV 288          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_GOSBA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Gossypium barbadense GN=ndhA PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.147e-47
Identity = 94/104 (90.38%), Postives = 99/104 (95.19%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLF 667
            LSNS ST+DIV AQSKYG+WGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLL+SSLFVTVLYLGG N+SI  Y+F
Sbjct:  185 LSNSSSTIDIVEAQSKYGYWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLLSSLFVTVLYLGGWNISI-PYVF 287          
The following BLAST results are available for this feature:
BLAST of CX291464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU1C_VITVI2.312e-4892.38NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_MORIN2.312e-4889.52NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_HELAN2.312e-4895.96NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_DAUCA2.312e-4895.96NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_ARAHI2.312e-4891.92NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_NUPAD3.019e-4894.95NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_DRANE3.019e-4891.92NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_GOSHI3.943e-4892.31NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_OENEH5.150e-4890.48NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_GOSBA1.147e-4790.38NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionC03008G11SK OF2 Citrus clementina cDNA clone C03008G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291464 ID=CX291464; Name=CX291464; organism=Citrus clementina; type=EST; length=707bp
GTAATCGAAAATAAAAGGATGGGTTGAACTATCGAGTGATATTTCTACAA
GAGTATTTTATTGAAGGGTTGATTAAGTTATTACTCAACACAGAAAATTT
GAAATTCGTAAAGGATGAGATTAATTCAGAAATACTGTTTTTTTATCCTT
AGAGCAGACAGAATTCCAGTGGTATAATTGGGGATCCTCCGCTAGATTTT
GACTTTATCCATCCTATAACCATATCAAAATCAAAATAACTAATACCGGT
CCGGTCCTTACATTTATTTGTGGCCCTGAGGAGCCGTATGAGGTGAAAAT
CTCATGTACGGTTTTGTAATAGCGATGGAAACCGTAATGTTACCACCGAC
TATGATTATCTAACAGTTTAAGTACAGTTGATATAGTTGTGGCGCAATCA
AAATATGGTTTTTGGGGGTGGAATTTGTGGCGTCAACCTATAGGGTTTAT
CGTTTTTCTAATTTCTTCCCTAGCGGAATGCGAGAGATTACCTTTTGATT
TACCAGAAGCGGAAGAAGAATTAGTAGCCGGTTATCAAACCGAATATTCA
GGAATCAAATTTGGTTTATTTTACGTTGCTTCCTATCTAAATCTACTAGT
TTCCTCATTATTTGTAACAGTTCTTTACTTGGGAGGTTCGAATCTTTCCA
TTCATACATATTTGTTCCTGGGCTGGTTGAAATAAATAAGCGGATGGAAT
CTTTGGA
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