CX291464

Overview
NameCX291464
Unique NameCX291464
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_PIPCE (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Piper cenocladum GN=ndhA PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.498e-47
Identity = 94/105 (89.52%), Postives = 98/105 (93.33%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSI-HTYLF 667
            LSNSLST+DIV  QSKYG WGWNLWRQP+GFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLY GG NLSI +T +F
Sbjct:  185 LSNSLSTIDIVEVQSKYGIWGWNLWRQPVGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYFGGWNLSIPYTSIF 289          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_ORYSJ (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Oryza sativa subsp. japonica GN=ndhA PE=2 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 1.498e-47
Identity = 94/109 (86.24%), Postives = 100/109 (91.74%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLGWLK 682
            LSNSLSTVDIV AQSKYGF+GWNLWRQPIGF+VFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIK+GLFY+ SYLNLLVSSLFVTVLYLGG NLSI    F G+ +
Sbjct:  184 LSNSLSTVDIVEAQSKYGFFGWNLWRQPIGFLVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKYGLFYLVSYLNLLVSSLFVTVLYLGGWNLSIPYISFFGFFQ 292          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_ORYSI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Oryza sativa subsp. indica GN=ndhA PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.498e-47
Identity = 94/109 (86.24%), Postives = 100/109 (91.74%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLGWLK 682
            LSNSLSTVDIV AQSKYGF+GWNLWRQPIGF+VFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIK+GLFY+ SYLNLLVSSLFVTVLYLGG NLSI    F G+ +
Sbjct:  184 LSNSLSTVDIVEAQSKYGFFGWNLWRQPIGFLVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKYGLFYLVSYLNLLVSSLFVTVLYLGGWNLSIPYISFFGFFQ 292          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_ORYSA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Oryza sativa GN=ndhA PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.498e-47
Identity = 94/109 (86.24%), Postives = 100/109 (91.74%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLGWLK 682
            LSNSLSTVDIV AQSKYGF+GWNLWRQPIGF+VFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIK+GLFY+ SYLNLLVSSLFVTVLYLGG NLSI    F G+ +
Sbjct:  184 LSNSLSTVDIVEAQSKYGFFGWNLWRQPIGFLVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKYGLFYLVSYLNLLVSSLFVTVLYLGGWNLSIPYISFFGFFQ 292          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_ORYNI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Oryza nivara GN=ndhA PE=2 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 1.498e-47
Identity = 94/109 (86.24%), Postives = 100/109 (91.74%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLGWLK 682
            LSNSLSTVDIV AQSKYGF+GWNLWRQPIGF+VFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIK+GLFY+ SYLNLLVSSLFVTVLYLGG NLSI    F G+ +
Sbjct:  184 LSNSLSTVDIVEAQSKYGFFGWNLWRQPIGFLVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKYGLFYLVSYLNLLVSSLFVTVLYLGGWNLSIPYISFFGFFQ 292          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_NYMAL (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Nymphaea alba GN=ndhA PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.498e-47
Identity = 93/99 (93.94%), Postives = 95/99 (95.96%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSI 652
            LSNS STVDIV AQSKYGFWGWNLWRQPIGF+VF+ISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG NL I
Sbjct:  183 LSNSSSTVDIVEAQSKYGFWGWNLWRQPIGFLVFIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWNLPI 281          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_CUCSA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis sativus GN=ndhA PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.498e-47
Identity = 92/99 (92.93%), Postives = 96/99 (96.97%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSI 652
            LSNS STVDIV AQSKYGFWGWNLWRQPIGF++FLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG ++SI
Sbjct:  185 LSNSSSTVDIVEAQSKYGFWGWNLWRQPIGFVIFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWDISI 283          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_ATRBE (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Atropa belladonna GN=ndhA PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.556e-47
Identity = 96/105 (91.43%), Postives = 99/105 (94.29%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFL 670
            LSNS STVDIV AQSKYGF GWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFY+ASYLNLLVSSLFVTVLYLGG NLSI  Y+F+
Sbjct:  185 LSNSSSTVDIVEAQSKYGFLGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYIASYLNLLVSSLFVTVLYLGGWNLSI-PYIFV 288          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_RANMC (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Ranunculus macranthus GN=ndhA PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.338e-47
Identity = 93/99 (93.94%), Postives = 94/99 (94.95%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSI 652
            LSNS STVDIV AQ+KYGFWGWNLWRQPIGF VF ISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG NLSI
Sbjct:  185 LSNSSSTVDIVEAQAKYGFWGWNLWRQPIGFTVFFISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWNLSI 283          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_SACOF (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Saccharum officinarum GN=ndhA PE=2 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 4.359e-47
Identity = 93/109 (85.32%), Postives = 99/109 (90.83%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLGWLK 682
            LSNSLSTVDIV AQSKYGF+GWNLWRQPIGF+VFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIK+GLFY+ SYLNLLVSSLFVTVLYLGG N SI    F G+ +
Sbjct:  184 LSNSLSTVDIVEAQSKYGFFGWNLWRQPIGFLVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKYGLFYLVSYLNLLVSSLFVTVLYLGGWNFSIPYISFFGFFQ 292          
The following BLAST results are available for this feature:
BLAST of CX291464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU1C_PIPCE1.498e-4789.52NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_ORYSJ1.498e-4786.24NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_ORYSI1.498e-4786.24NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_ORYSA1.498e-4786.24NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_ORYNI1.498e-4786.24NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_NYMAL1.498e-4793.94NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_CUCSA1.498e-4792.93NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_ATRBE2.556e-4791.43NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_RANMC3.338e-4793.94NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_SACOF4.359e-4785.32NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionC03008G11SK OF2 Citrus clementina cDNA clone C03008G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291464 ID=CX291464; Name=CX291464; organism=Citrus clementina; type=EST; length=707bp
GTAATCGAAAATAAAAGGATGGGTTGAACTATCGAGTGATATTTCTACAA
GAGTATTTTATTGAAGGGTTGATTAAGTTATTACTCAACACAGAAAATTT
GAAATTCGTAAAGGATGAGATTAATTCAGAAATACTGTTTTTTTATCCTT
AGAGCAGACAGAATTCCAGTGGTATAATTGGGGATCCTCCGCTAGATTTT
GACTTTATCCATCCTATAACCATATCAAAATCAAAATAACTAATACCGGT
CCGGTCCTTACATTTATTTGTGGCCCTGAGGAGCCGTATGAGGTGAAAAT
CTCATGTACGGTTTTGTAATAGCGATGGAAACCGTAATGTTACCACCGAC
TATGATTATCTAACAGTTTAAGTACAGTTGATATAGTTGTGGCGCAATCA
AAATATGGTTTTTGGGGGTGGAATTTGTGGCGTCAACCTATAGGGTTTAT
CGTTTTTCTAATTTCTTCCCTAGCGGAATGCGAGAGATTACCTTTTGATT
TACCAGAAGCGGAAGAAGAATTAGTAGCCGGTTATCAAACCGAATATTCA
GGAATCAAATTTGGTTTATTTTACGTTGCTTCCTATCTAAATCTACTAGT
TTCCTCATTATTTGTAACAGTTCTTTACTTGGGAGGTTCGAATCTTTCCA
TTCATACATATTTGTTCCTGGGCTGGTTGAAATAAATAAGCGGATGGAAT
CTTTGGA
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