CX291464

Overview
NameCX291464
Unique NameCX291464
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_BURCA (NADH-quinone oxidoreductase subunit H OS=Burkholderia cenocepacia (strain AU 1054) GN=nuoH PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 40/101 (39.60%), Postives = 61/101 (60.40%), Query Frame = 2
Query:  359 SNSLSTVDIVVAQSKYGFWG--------WNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            + SL+  +IV +Q ++GF+         WN       F+V+ IS +AE  R PFD+ E E E+VAG+  +YSG+ F LF++A Y+N++V S     L+LGG
Sbjct:  181 AGSLNLSEIVGSQ-QHGFFAGHGVNFLSWNWLPLLPAFVVYFISGIAETNRHPFDVVEGESEIVAGHMIDYSGMAFALFFLAEYINMIVISALAATLFLGG 280          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_BORA1 (NADH-quinone oxidoreductase subunit H OS=Bordetella avium (strain 197N) GN=nuoH PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 39/103 (37.86%), Postives = 64/103 (62.14%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGF---------WGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            +S SL+  +IV+ Q +  F         W W L   P+ F++++IS++AE  R PFD+ E E E+VAG+  EYSG+ F LF++  Y N+++ S   ++++LGG
Sbjct:  181 VSGSLNMNEIVLGQGRGWFAERGLTFLSWNW-LPLLPL-FVIYVISAVAETNRHPFDVVEGESEIVAGHMVEYSGMAFALFFLGEYANMILLSAMASIMFLGG 281          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_BURVG (NADH-quinone oxidoreductase subunit H OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=nuoH PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 39/101 (38.61%), Postives = 61/101 (60.40%), Query Frame = 2
Query:  359 SNSLSTVDIVVAQSKYGFWG--------WNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            + SL+  +IV +Q ++GF+         WN       F+V+ +S +AE  R PFD+ E E E+VAG+  +YSG+ F LF++A Y+N++V S     L+LGG
Sbjct:  181 AGSLNLSEIVGSQ-QHGFFAGHGVNFLSWNWLPLLPAFVVYFVSGIAETNRHPFDVVEGESEIVAGHMIDYSGMAFALFFLAEYINMIVISALAATLFLGG 280          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_BURCM (NADH-quinone oxidoreductase subunit H OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=nuoH PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 39/101 (38.61%), Postives = 61/101 (60.40%), Query Frame = 2
Query:  359 SNSLSTVDIVVAQSKYGFWG--------WNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            + SL+  +IV +Q ++GF+         WN       F+V+ +S +AE  R PFD+ E E E+VAG+  +YSG+ F LF++A Y+N++V S     L+LGG
Sbjct:  181 AGSLNLSEIVGSQ-QHGFFAGHGVNFLSWNWLPLLPAFVVYFVSGIAETNRHPFDVVEGESEIVAGHMIDYSGMAFALFFLAEYINMIVISALAATLFLGG 280          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_BURA4 (NADH-quinone oxidoreductase subunit H OS=Burkholderia ambifaria (strain MC40-6) GN=nuoH PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 39/101 (38.61%), Postives = 61/101 (60.40%), Query Frame = 2
Query:  359 SNSLSTVDIVVAQSKYGFWG--------WNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            + SL+  +IV +Q ++GF+         WN       F+V+ +S +AE  R PFD+ E E E+VAG+  +YSG+ F LF++A Y+N++V S     L+LGG
Sbjct:  181 AGSLNLSEIVGSQ-QHGFFAGHGVNFLSWNWLPLLPAFVVYFVSGIAETNRHPFDVVEGESEIVAGHMIDYSGMAFALFFLAEYINMIVISALAATLFLGG 280          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1M_METSE (NADH-ubiquinone oxidoreductase chain 1 OS=Metridium senile GN=ND1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 39/91 (42.86%), Postives = 61/91 (67.03%), Query Frame = 2
Query:  365 SLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            SL+  +IV+AQS   ++ + L+  P+  ++F  S+LAE  R PFDL E E ELV+GY  EY+ + F LF++A Y ++++ S   T+L+LGG
Sbjct:  174 SLNITEIVLAQSSGIWFFFPLF--PVA-MMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILMSCLTTILFLGG 261          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_FRAP2 (NADH-quinone oxidoreductase subunit H OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=nuoH PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 33/93 (35.48%), Postives = 58/93 (62.37%), Query Frame = 2
Query:  359 SNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            + S+    I+ +Q+  G W W        F+V+ I+ +AE  R PFD+ E E E++AG+  EY+G +F LF++A Y N+++ S+  ++++LGG
Sbjct:  165 AGSMGITGIIESQAG-GLWHWYFIPLFPLFVVYFIAGIAETNRAPFDVVEGESEIIAGHHIEYTGSRFALFFLAEYANMILISILTSIMFLGG 256          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_BURPP (NADH-quinone oxidoreductase subunit H OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=nuoH PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 40/100 (40.00%), Postives = 59/100 (59.00%), Query Frame = 2
Query:  359 SNSLSTVDIVVAQ-----SKYG--FWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            + +L+   IV +Q     + YG  F  WN       F+V+ IS +AE  R PFD+ E E E+VAG+  +YSG+ F LF++A Y+N++V S     L+LGG
Sbjct:  181 AGTLNLSGIVASQEHGIFASYGLNFLSWNWLPLLPMFVVYFISGIAETNRHPFDVVEGESEIVAGHMIDYSGMAFALFFLAEYINMIVISALAATLFLGG 280          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_ALHEH (NADH-quinone oxidoreductase subunit H OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=nuoH PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 42/106 (39.62%), Postives = 63/106 (59.43%), Query Frame = 2
Query:  359 SNSLSTVDIVVAQSKYGF-WGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLG 673
            + S++   I+ AQ+   F W W L   P+ F+V+ IS +AE  R PFD+ E E E+VAG+  EYSG  F +F++A Y N+++ S    V++LGG     H +  LG
Sbjct:  167 AGSMNLGQIIQAQAGGIFHWFW-LPLLPL-FLVYWISGVAETNRAPFDVAEGESEIVAGFHVEYSGTSFAVFFLAEYANMILISAVAAVMFLGGWYSPFHGWPILG 270          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_HALHL (NADH-quinone oxidoreductase subunit H OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=nuoH PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 34/77 (44.16%), Postives = 49/77 (63.64%), Query Frame = 2
Query:  410 FWGWNLWRQPIG-FIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            FW W  W   +  F+++ IS +AE  R PFD+ E E E+VAG+  EYSG+ F +F++A Y N+L+ S     L+LGG
Sbjct:  181 FWEW-FWLPLLPLFLIYWISGVAETNRAPFDIAEGESEIVAGFHVEYSGMAFAVFFLAEYANMLLISFLAATLFLGG 256          
The following BLAST results are available for this feature:
BLAST of CX291464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOH_BURCA3.153e-1339.60NADH-quinone oxidoreductase subunit H OS=Burkholde... [more]
NUOH_BORA13.153e-1337.86NADH-quinone oxidoreductase subunit H OS=Bordetell... [more]
NUOH_BURVG4.118e-1338.61NADH-quinone oxidoreductase subunit H OS=Burkholde... [more]
NUOH_BURCM4.118e-1338.61NADH-quinone oxidoreductase subunit H OS=Burkholde... [more]
NUOH_BURA44.118e-1338.61NADH-quinone oxidoreductase subunit H OS=Burkholde... [more]
NU1M_METSE4.118e-1342.86NADH-ubiquinone oxidoreductase chain 1 OS=Metridiu... [more]
NUOH_FRAP25.379e-1335.48NADH-quinone oxidoreductase subunit H OS=Francisel... [more]
NUOH_BURPP5.379e-1340.00NADH-quinone oxidoreductase subunit H OS=Burkholde... [more]
NUOH_ALHEH5.379e-1339.62NADH-quinone oxidoreductase subunit H OS=Alkalilim... [more]
NUOH_HALHL7.025e-1344.16NADH-quinone oxidoreductase subunit H OS=Halorhodo... [more]

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Properties
Property NameValue
Genbank descriptionC03008G11SK OF2 Citrus clementina cDNA clone C03008G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291464 ID=CX291464; Name=CX291464; organism=Citrus clementina; type=EST; length=707bp
GTAATCGAAAATAAAAGGATGGGTTGAACTATCGAGTGATATTTCTACAA
GAGTATTTTATTGAAGGGTTGATTAAGTTATTACTCAACACAGAAAATTT
GAAATTCGTAAAGGATGAGATTAATTCAGAAATACTGTTTTTTTATCCTT
AGAGCAGACAGAATTCCAGTGGTATAATTGGGGATCCTCCGCTAGATTTT
GACTTTATCCATCCTATAACCATATCAAAATCAAAATAACTAATACCGGT
CCGGTCCTTACATTTATTTGTGGCCCTGAGGAGCCGTATGAGGTGAAAAT
CTCATGTACGGTTTTGTAATAGCGATGGAAACCGTAATGTTACCACCGAC
TATGATTATCTAACAGTTTAAGTACAGTTGATATAGTTGTGGCGCAATCA
AAATATGGTTTTTGGGGGTGGAATTTGTGGCGTCAACCTATAGGGTTTAT
CGTTTTTCTAATTTCTTCCCTAGCGGAATGCGAGAGATTACCTTTTGATT
TACCAGAAGCGGAAGAAGAATTAGTAGCCGGTTATCAAACCGAATATTCA
GGAATCAAATTTGGTTTATTTTACGTTGCTTCCTATCTAAATCTACTAGT
TTCCTCATTATTTGTAACAGTTCTTTACTTGGGAGGTTCGAATCTTTCCA
TTCATACATATTTGTTCCTGGGCTGGTTGAAATAAATAAGCGGATGGAAT
CTTTGGA
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