CX291464

Overview
NameCX291464
Unique NameCX291464
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_BURTA (NADH-quinone oxidoreductase subunit H OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=nuoH PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 41/103 (39.81%), Postives = 63/103 (61.17%), Query Frame = 2 
Query:  359 SNSLSTVDIVVAQSKYGF----------WGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            + SL+  +IV +Q ++GF          W W L   P+ F+++ IS +AE  R PFD+ E E E+VAG+  +YSG+ F LF++A Y+N++V S     L+LGG
Sbjct:  181 AGSLNLSEIVGSQ-QHGFFAGHGVNFLSWNW-LPLLPV-FVIYFISGIAETNRHPFDVVEGESEIVAGHMIDYSGMAFALFFLAEYINMIVISALAATLFLGG 280
[Close]
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_BURPS (NADH-quinone oxidoreductase subunit H OS=Burkholderia pseudomallei GN=nuoH PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 41/103 (39.81%), Postives = 63/103 (61.17%), Query Frame = 2 
Query:  359 SNSLSTVDIVVAQSKYGF----------WGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            + SL+  +IV +Q ++GF          W W L   P+ F+++ IS +AE  R PFD+ E E E+VAG+  +YSG+ F LF++A Y+N++V S     L+LGG
Sbjct:  181 AGSLNLSEIVGSQ-QHGFFAGHGVNFLSWNW-LPLLPV-FVIYFISGIAETNRHPFDVVEGESEIVAGHMIDYSGMAFALFFLAEYINMIVISALAATLFLGG 280
[Close]
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_BURP6 (NADH-quinone oxidoreductase subunit H OS=Burkholderia pseudomallei (strain 668) GN=nuoH PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 41/103 (39.81%), Postives = 63/103 (61.17%), Query Frame = 2 
Query:  359 SNSLSTVDIVVAQSKYGF----------WGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            + SL+  +IV +Q ++GF          W W L   P+ F+++ IS +AE  R PFD+ E E E+VAG+  +YSG+ F LF++A Y+N++V S     L+LGG
Sbjct:  181 AGSLNLSEIVGSQ-QHGFFAGHGVNFLSWNW-LPLLPV-FVIYFISGIAETNRHPFDVVEGESEIVAGHMIDYSGMAFALFFLAEYINMIVISALAATLFLGG 280
[Close]
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_BURP1 (NADH-quinone oxidoreductase subunit H OS=Burkholderia pseudomallei (strain 1710b) GN=nuoH PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 41/103 (39.81%), Postives = 63/103 (61.17%), Query Frame = 2 
Query:  359 SNSLSTVDIVVAQSKYGF----------WGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            + SL+  +IV +Q ++GF          W W L   P+ F+++ IS +AE  R PFD+ E E E+VAG+  +YSG+ F LF++A Y+N++V S     L+LGG
Sbjct:  181 AGSLNLSEIVGSQ-QHGFFAGHGVNFLSWNW-LPLLPV-FVIYFISGIAETNRHPFDVVEGESEIVAGHMIDYSGMAFALFFLAEYINMIVISALAATLFLGG 280
[Close]
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_BURP0 (NADH-quinone oxidoreductase subunit H OS=Burkholderia pseudomallei (strain 1106a) GN=nuoH PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 41/103 (39.81%), Postives = 63/103 (61.17%), Query Frame = 2 
Query:  359 SNSLSTVDIVVAQSKYGF----------WGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            + SL+  +IV +Q ++GF          W W L   P+ F+++ IS +AE  R PFD+ E E E+VAG+  +YSG+ F LF++A Y+N++V S     L+LGG
Sbjct:  181 AGSLNLSEIVGSQ-QHGFFAGHGVNFLSWNW-LPLLPV-FVIYFISGIAETNRHPFDVVEGESEIVAGHMIDYSGMAFALFFLAEYINMIVISALAATLFLGG 280
[Close]
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_BURMA (NADH-quinone oxidoreductase subunit H OS=Burkholderia mallei GN=nuoH PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 41/103 (39.81%), Postives = 63/103 (61.17%), Query Frame = 2 
Query:  359 SNSLSTVDIVVAQSKYGF----------WGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            + SL+  +IV +Q ++GF          W W L   P+ F+++ IS +AE  R PFD+ E E E+VAG+  +YSG+ F LF++A Y+N++V S     L+LGG
Sbjct:  181 AGSLNLSEIVGSQ-QHGFFAGHGVNFLSWNW-LPLLPV-FVIYFISGIAETNRHPFDVVEGESEIVAGHMIDYSGMAFALFFLAEYINMIVISALAATLFLGG 280
[Close]
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_BRUSU (NADH-quinone oxidoreductase subunit H OS=Brucella suis GN=nuoH PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 46/114 (40.35%), Postives = 63/114 (55.26%), Query Frame = 2 
Query:  365 SLSTVDIVVAQSK---------YGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLGWL 679
            SL+  DIV++Q+            F  WN       F+VF IS+LAE  R PFDL EAE ELVAG+  EYS   F LF++  Y+ + +    +TVL+LGG    +  + FL W+
Sbjct:  174 SLNLTDIVLSQNTGLGTMLGLPASFLDWNWLCLFPMFVVFFISALAETNRPPFDLVEAESELVAGHMIEYSSTPFLLFFLGEYVAITLMCALMTVLFLGGWLPPVDVW-FLSWV 286
[Close]
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_BRUSI (NADH-quinone oxidoreductase subunit H OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=nuoH PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 46/114 (40.35%), Postives = 63/114 (55.26%), Query Frame = 2 
Query:  365 SLSTVDIVVAQSK---------YGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLGWL 679
            SL+  DIV++Q+            F  WN       F+VF IS+LAE  R PFDL EAE ELVAG+  EYS   F LF++  Y+ + +    +TVL+LGG    +  + FL W+
Sbjct:  174 SLNLTDIVLSQNTGLGTMLGLPASFLDWNWLCLFPMFVVFFISALAETNRPPFDLVEAESELVAGHMIEYSSTPFLLFFLGEYVAITLMCALMTVLFLGGWLPPVDVW-FLSWV 286
[Close]
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_BRUO2 (NADH-quinone oxidoreductase subunit H OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=nuoH PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 46/114 (40.35%), Postives = 63/114 (55.26%), Query Frame = 2 
Query:  365 SLSTVDIVVAQSK---------YGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLGWL 679
            SL+  DIV++Q+            F  WN       F+VF IS+LAE  R PFDL EAE ELVAG+  EYS   F LF++  Y+ + +    +TVL+LGG    +  + FL W+
Sbjct:  174 SLNLTDIVLSQNTGLGTMLGLPASFLDWNWLCLFPMFVVFFISALAETNRPPFDLVEAESELVAGHMIEYSSTPFLLFFLGEYVAITLMCALMTVLFLGGWLPPVDVW-FLSWV 286
[Close]
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_BRUME (NADH-quinone oxidoreductase subunit H OS=Brucella melitensis GN=nuoH PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 46/114 (40.35%), Postives = 63/114 (55.26%), Query Frame = 2 
Query:  365 SLSTVDIVVAQSK---------YGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLGWL 679
            SL+  DIV++Q+            F  WN       F+VF IS+LAE  R PFDL EAE ELVAG+  EYS   F LF++  Y+ + +    +TVL+LGG    +  + FL W+
Sbjct:  174 SLNLTDIVLSQNTGLGTMLGLPASFLDWNWLCLFPMFVVFFISALAETNRPPFDLVEAESELVAGHMIEYSSTPFLLFFLGEYVAITLMCALMTVLFLGGWLPPVDVW-FLSWV 286
The following BLAST results are available for this feature:
BLAST of CX291464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOH_BURTA7.025e-1339.81NADH-quinone oxidoreductase subunit H OS=Burkholde... [more]
NUOH_BURPS7.025e-1339.81NADH-quinone oxidoreductase subunit H OS=Burkholde... [more]
NUOH_BURP67.025e-1339.81NADH-quinone oxidoreductase subunit H OS=Burkholde... [more]
NUOH_BURP17.025e-1339.81NADH-quinone oxidoreductase subunit H OS=Burkholde... [more]
NUOH_BURP07.025e-1339.81NADH-quinone oxidoreductase subunit H OS=Burkholde... [more]
NUOH_BURMA7.025e-1339.81NADH-quinone oxidoreductase subunit H OS=Burkholde... [more]
NUOH_BRUSU7.025e-1340.35NADH-quinone oxidoreductase subunit H OS=Brucella ... [more]
NUOH_BRUSI7.025e-1340.35NADH-quinone oxidoreductase subunit H OS=Brucella ... [more]
NUOH_BRUO27.025e-1340.35NADH-quinone oxidoreductase subunit H OS=Brucella ... [more]
NUOH_BRUME7.025e-1340.35NADH-quinone oxidoreductase subunit H OS=Brucella ... [more]

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Properties
Property NameValue
Genbank descriptionC03008G11SK OF2 Citrus clementina cDNA clone C03008G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291464 ID=CX291464; Name=CX291464; organism=Citrus clementina; type=EST; length=707bp
GTAATCGAAAATAAAAGGATGGGTTGAACTATCGAGTGATATTTCTACAA
GAGTATTTTATTGAAGGGTTGATTAAGTTATTACTCAACACAGAAAATTT
GAAATTCGTAAAGGATGAGATTAATTCAGAAATACTGTTTTTTTATCCTT
AGAGCAGACAGAATTCCAGTGGTATAATTGGGGATCCTCCGCTAGATTTT
GACTTTATCCATCCTATAACCATATCAAAATCAAAATAACTAATACCGGT
CCGGTCCTTACATTTATTTGTGGCCCTGAGGAGCCGTATGAGGTGAAAAT
CTCATGTACGGTTTTGTAATAGCGATGGAAACCGTAATGTTACCACCGAC
TATGATTATCTAACAGTTTAAGTACAGTTGATATAGTTGTGGCGCAATCA
AAATATGGTTTTTGGGGGTGGAATTTGTGGCGTCAACCTATAGGGTTTAT
CGTTTTTCTAATTTCTTCCCTAGCGGAATGCGAGAGATTACCTTTTGATT
TACCAGAAGCGGAAGAAGAATTAGTAGCCGGTTATCAAACCGAATATTCA
GGAATCAAATTTGGTTTATTTTACGTTGCTTCCTATCTAAATCTACTAGT
TTCCTCATTATTTGTAACAGTTCTTTACTTGGGAGGTTCGAATCTTTCCA
TTCATACATATTTGTTCCTGGGCTGGTTGAAATAAATAAGCGGATGGAAT
CTTTGGA
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