CX291464

Overview
NameCX291464
Unique NameCX291464
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1M_RANCA (NADH-ubiquinone oxidoreductase chain 1 OS=Rana catesbeiana GN=MT-ND1 PE=3 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12
Identity = 36/89 (40.45%), Postives = 57/89 (64.04%), Query Frame = 2
Query:  446 FIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG--SNLSIHTYLFLGWLK*ISGWNLW 706
            F+++ +S+LAE  R PFDL E E ELV+G+  EY+G  F LF++A Y N+L+ +   T+++LG   S+L++ T L +     +S   LW
Sbjct:  186 FLMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLSTIIFLGSCMSSLTLTTSLLMTKASILSLCFLW 274          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_PSEE4 (NADH-quinone oxidoreductase subunit H OS=Pseudomonas entomophila (strain L48) GN=nuoH PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 33/75 (44.00%), Postives = 47/75 (62.67%), Query Frame = 2
Query:  422 NLW---RQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            NLW    Q  GF  F I+ +A   R PFD PEAE+EL  GY  EY+G+K+G+F+V  Y+ +++ S  +  L+ GG
Sbjct:  186 NLWFIIPQFFGFCTFFIAGVAVTHRHPFDQPEAEQELADGYHIEYAGMKWGMFFVGEYIGIILISALLVTLFFGG 260          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_PARDP (NADH-quinone oxidoreductase subunit H OS=Paracoccus denitrificans (strain Pd 1222) GN=nuoH PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 43/108 (39.81%), Postives = 61/108 (56.48%), Query Frame = 2
Query:  359 SNSLSTVDIVVAQ-SKYGFWGWNLWRQPIGFIV-FLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLGW 676
            + S++   IV AQ   YG   W  W   +  +V F +S+LAEC R PFDL EAE ELVAG+ TEYS   + LF    Y+ + +    +++L+ GG  LS   ++  GW
Sbjct:  172 TGSMNLTAIVEAQRGDYGLLNW-YWLPHLPMVVLFFVSALAECNRPPFDLVEAESELVAGFMTEYSSTPYLLFMAGEYIAMYLMCALLSLLFFGGW-LSPVPFIADGW 277          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_MESSB (NADH-quinone oxidoreductase subunit H OS=Mesorhizobium sp. (strain BNC1) GN=nuoH PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 43/102 (42.16%), Postives = 60/102 (58.82%), Query Frame = 2
Query:  365 SLSTVDIVVAQ-----------SKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            SL+  DIV++Q           + +  W W L   P+ FI+F IS+LAE  R PFDL EAE ELVAG+  EYS   F LF++  Y+ +++     T+L+LGG
Sbjct:  174 SLNLTDIVLSQRDGLGTMVGLPNSFLDWHW-LALFPM-FIIFFISALAETNRPPFDLVEAESELVAGHMIEYSSTPFLLFFLGEYVAIVLMCALTTILFLGG 273          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1M_CHLRE (NADH-ubiquinone oxidoreductase chain 1 OS=Chlamydomonas reinhardtii GN=ND1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 36/77 (46.75%), Postives = 50/77 (64.94%), Query Frame = 2
Query:  449 IVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLGWL 679
            ++FL+  LAE +R PFDLPEAE  LVAGY  EYS + F LF++A Y N+ V S   ++ +LGG +    T LF  ++
Sbjct:  180 LIFLVCILAETKRDPFDLPEAE--LVAGYNVEYSSLGFALFFIAEYANMAVMSAIASIYFLGGFSALKITALFFAFV 254          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_BART1 (NADH-quinone oxidoreductase subunit H OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=nuoH PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 41/104 (39.42%), Postives = 56/104 (53.85%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSK----------YGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            +S SL    IV+ Q +            F  WN       FI+F IS+LAE  R PFDL EAE ELVAG+  EYS   + LF++  Y+ +++     T+L+LGG
Sbjct:  171 ISGSLDLTTIVLKQGQGLGTTLGLPFNSFLDWNWLVLFPMFIIFFISALAETNRPPFDLVEAESELVAGHMVEYSSTPYMLFFLGEYVAIVLMCALTTILFLGG 274          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_BARQU (NADH-quinone oxidoreductase subunit H OS=Bartonella quintana GN=nuoH PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 44/105 (41.90%), Postives = 57/105 (54.29%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYG-----------FWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            +S SL    IV  QS YG           F  WN       FI+F IS+LAE  R PFDL EAE ELVAG+  EYS   + LF++  Y+ +++     T+L+LGG
Sbjct:  171 VSGSLDLTTIVHKQS-YGIGTTLGFPFNSFLDWNWLVLFPMFIIFFISALAETNRPPFDLVEAESELVAGHMVEYSSTPYMLFFLGEYVAIVLMCALTTILFLGG 274          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_AGRRK (NADH-quinone oxidoreductase subunit H OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=nuoH PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 44/102 (43.14%), Postives = 59/102 (57.84%), Query Frame = 2
Query:  365 SLSTVDIVVAQ-----SKYGF------WGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            SL+  DIV++Q     +K G       W W L   P+ FIVF IS+LAE  R PFDLPEAE ELVAG+  EY    + +F +  Y  +++     T+L+LGG
Sbjct:  174 SLNLTDIVMSQQTGLGTKLGLPASFLDWHW-LSLFPM-FIVFFISALAETNRPPFDLPEAESELVAGFMVEYGSAPYMMFMLGEYAAVVLMCSLTTILFLGG 273          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1M_PODAN (NADH-ubiquinone oxidoreductase chain 1 OS=Podospora anserina GN=ND1 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 31/73 (42.47%), Postives = 50/73 (68.49%), Query Frame = 2
Query:  419 WNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            WN++     FI+F I S+AE  R PFDL EAE ELV+G+ TE++ + F  F++A Y ++++  +  ++L+LGG
Sbjct:  181 WNIFPLLPVFIIFFIGSVAETNRAPFDLAEAESELVSGFMTEHAAVVFVFFFLAEYGSIVLMCILTSILFLGG 253          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_RALEJ (NADH-quinone oxidoreductase subunit H OS=Ralstonia eutropha (strain JMP134) GN=nuoH PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 31/64 (48.44%), Postives = 45/64 (70.31%), Query Frame = 2
Query:  446 FIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            F V+ IS +AE  R PFD+ E E E+VAG+  EYSG+ F LF++A Y+N+++ S    +L+LGG
Sbjct:  215 FGVYFISGVAETNRHPFDVVEGESEIVAGHMIEYSGMAFALFFLAEYINMIIISTITALLFLGG 278          
The following BLAST results are available for this feature:
BLAST of CX291464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU1M_RANCA4.553e-1240.45NADH-ubiquinone oxidoreductase chain 1 OS=Rana cat... [more]
NUOH_PSEE45.947e-1244.00NADH-quinone oxidoreductase subunit H OS=Pseudomon... [more]
NUOH_PARDP5.947e-1239.81NADH-quinone oxidoreductase subunit H OS=Paracoccu... [more]
NUOH_MESSB5.947e-1242.16NADH-quinone oxidoreductase subunit H OS=Mesorhizo... [more]
NU1M_CHLRE5.947e-1246.75NADH-ubiquinone oxidoreductase chain 1 OS=Chlamydo... [more]
NUOH_BART17.767e-1239.42NADH-quinone oxidoreductase subunit H OS=Bartonell... [more]
NUOH_BARQU7.767e-1241.90NADH-quinone oxidoreductase subunit H OS=Bartonell... [more]
NUOH_AGRRK7.767e-1243.14NADH-quinone oxidoreductase subunit H OS=Agrobacte... [more]
NU1M_PODAN7.767e-1242.47NADH-ubiquinone oxidoreductase chain 1 OS=Podospor... [more]
NUOH_RALEJ1.014e-1148.44NADH-quinone oxidoreductase subunit H OS=Ralstonia... [more]

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Properties
Property NameValue
Genbank descriptionC03008G11SK OF2 Citrus clementina cDNA clone C03008G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291464 ID=CX291464; Name=CX291464; organism=Citrus clementina; type=EST; length=707bp
GTAATCGAAAATAAAAGGATGGGTTGAACTATCGAGTGATATTTCTACAA
GAGTATTTTATTGAAGGGTTGATTAAGTTATTACTCAACACAGAAAATTT
GAAATTCGTAAAGGATGAGATTAATTCAGAAATACTGTTTTTTTATCCTT
AGAGCAGACAGAATTCCAGTGGTATAATTGGGGATCCTCCGCTAGATTTT
GACTTTATCCATCCTATAACCATATCAAAATCAAAATAACTAATACCGGT
CCGGTCCTTACATTTATTTGTGGCCCTGAGGAGCCGTATGAGGTGAAAAT
CTCATGTACGGTTTTGTAATAGCGATGGAAACCGTAATGTTACCACCGAC
TATGATTATCTAACAGTTTAAGTACAGTTGATATAGTTGTGGCGCAATCA
AAATATGGTTTTTGGGGGTGGAATTTGTGGCGTCAACCTATAGGGTTTAT
CGTTTTTCTAATTTCTTCCCTAGCGGAATGCGAGAGATTACCTTTTGATT
TACCAGAAGCGGAAGAAGAATTAGTAGCCGGTTATCAAACCGAATATTCA
GGAATCAAATTTGGTTTATTTTACGTTGCTTCCTATCTAAATCTACTAGT
TTCCTCATTATTTGTAACAGTTCTTTACTTGGGAGGTTCGAATCTTTCCA
TTCATACATATTTGTTCCTGGGCTGGTTGAAATAAATAAGCGGATGGAAT
CTTTGGA
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