CX291464

Overview
NameCX291464
Unique NameCX291464
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_SACHY (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Saccharum hybrid GN=ndhA PE=2 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 4.359e-47
Identity = 93/109 (85.32%), Postives = 99/109 (90.83%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLGWLK 682
            LSNSLSTVDIV AQSKYGF+GWNLWRQPIGF+VFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIK+GLFY+ SYLNLLVSSLFVTVLYLGG N SI    F G+ +
Sbjct:  184 LSNSLSTVDIVEAQSKYGFFGWNLWRQPIGFLVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKYGLFYLVSYLNLLVSSLFVTVLYLGGWNFSIPYISFFGFFQ 292          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_MAIZE (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Zea mays GN=ndhA PE=2 SV=3)

HSP 1 Score: 187.963 bits (476), Expect = 4.359e-47
Identity = 93/109 (85.32%), Postives = 99/109 (90.83%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLGWLK 682
            LSNSLSTVDIV AQSKYGF+GWNLWRQPIGF+VFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIK+GLFY+ SYLNLLVSSLFVTVLYLGG N SI    F G+ +
Sbjct:  184 LSNSLSTVDIVEAQSKYGFFGWNLWRQPIGFLVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKYGLFYLVSYLNLLVSSLFVTVLYLGGWNFSIPYISFFGFFQ 292          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_ARATH (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Arabidopsis thaliana GN=ndhA PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.359e-47
Identity = 91/98 (92.86%), Postives = 95/98 (96.94%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLS 649
            LSNSLSTVDIV AQSKYGFWGWNLWRQPIGFI+FLISSLAE ERLPFDLPEAEEEL+AGYQTEYSGIKFGLFYVASYLNLL+SSLFVTVLYLGG N+S
Sbjct:  185 LSNSLSTVDIVEAQSKYGFWGWNLWRQPIGFIIFLISSLAESERLPFDLPEAEEELIAGYQTEYSGIKFGLFYVASYLNLLISSLFVTVLYLGGWNIS 282          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_ANTFO (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Anthoceros formosae GN=ndhA PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.359e-47
Identity = 92/99 (92.93%), Postives = 95/99 (95.96%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSI 652
            LSNSLSTVDIV  QSK+GFWGWN+WRQPIGFI FLI+SLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG NLSI
Sbjct:  186 LSNSLSTVDIVEIQSKFGFWGWNVWRQPIGFIAFLIASLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWNLSI 284          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_AMBTC (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Amborella trichopoda GN=ndhA PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.436e-47
Identity = 92/99 (92.93%), Postives = 94/99 (94.95%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSI 652
            LSNS STVDIV AQ KYGFWGWNLWRQPIGF+ FLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFY+ASYLNLLVSSLFVTVLYLGG NLSI
Sbjct:  185 LSNSSSTVDIVEAQYKYGFWGWNLWRQPIGFLAFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYLASYLNLLVSSLFVTVLYLGGWNLSI 283          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_LIRTU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Liriodendron tulipifera GN=ndhA PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.268e-46
Identity = 96/105 (91.43%), Postives = 98/105 (93.33%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFL 670
            LSNS STVDIV AQSKYGF GWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIK GLFYVASYLNLLVSSLFVTVLYLGG NLSI  Y+F+
Sbjct:  185 LSNSSSTVDIVEAQSKYGFGGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKSGLFYVASYLNLLVSSLFVTVLYLGGWNLSI-PYIFI 288          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_WHEAT (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Triticum aestivum GN=ndhA PE=2 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 1.657e-46
Identity = 91/99 (91.92%), Postives = 96/99 (96.97%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSI 652
            LSNSLSTVDIV AQSKYGF+GWN+WRQPIGF+VFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIK+GLFY+ SYLNLLVSSLFVTVLYLGG NLSI
Sbjct:  184 LSNSLSTVDIVEAQSKYGFFGWNIWRQPIGFLVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKYGLFYLVSYLNLLVSSLFVTVLYLGGWNLSI 282          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_CYCTA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cycas taitungensis GN=ndhA PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.657e-46
Identity = 90/99 (90.91%), Postives = 92/99 (92.93%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSI 652
            LSNSL TVDIV AQS+YGFWGWNLWRQPIGFI F ISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLL SSLFVT+LYLGG N SI
Sbjct:  187 LSNSLGTVDIVEAQSRYGFWGWNLWRQPIGFIAFFISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLASSLFVTILYLGGWNFSI 285          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_SORBI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Sorghum bicolor GN=ndhA PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.164e-46
Identity = 92/109 (84.40%), Postives = 98/109 (89.91%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLGWLK 682
            LSNS STVDIV AQSKYGF+GWNLWRQPIGF+VFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIK+GLFY+ SYLNLLVSSLFVTVLYLGG N SI    F G+ +
Sbjct:  184 LSNSSSTVDIVEAQSKYGFFGWNLWRQPIGFLVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKYGLFYLVSYLNLLVSSLFVTVLYLGGWNFSIPYISFFGFFQ 292          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_ILLOL (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Illicium oligandrum GN=ndhA PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.690e-46
Identity = 94/99 (94.95%), Postives = 94/99 (94.95%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSI 652
            LSNS STVDIV AQSKYGF GWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIK GLFYVASYLNLLVSSLFVTVLYLGG NLSI
Sbjct:  186 LSNSSSTVDIVEAQSKYGFCGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKSGLFYVASYLNLLVSSLFVTVLYLGGWNLSI 284          
The following BLAST results are available for this feature:
BLAST of CX291464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU1C_SACHY4.359e-4785.32NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_MAIZE4.359e-4785.32NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_ARATH4.359e-4792.86NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_ANTFO4.359e-4792.93NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_AMBTC7.436e-4792.93NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_LIRTU1.268e-4691.43NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_WHEAT1.657e-4691.92NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_CYCTA1.657e-4690.91NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_SORBI2.164e-4684.40NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_ILLOL3.690e-4694.95NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionC03008G11SK OF2 Citrus clementina cDNA clone C03008G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291464 ID=CX291464; Name=CX291464; organism=Citrus clementina; type=EST; length=707bp
GTAATCGAAAATAAAAGGATGGGTTGAACTATCGAGTGATATTTCTACAA
GAGTATTTTATTGAAGGGTTGATTAAGTTATTACTCAACACAGAAAATTT
GAAATTCGTAAAGGATGAGATTAATTCAGAAATACTGTTTTTTTATCCTT
AGAGCAGACAGAATTCCAGTGGTATAATTGGGGATCCTCCGCTAGATTTT
GACTTTATCCATCCTATAACCATATCAAAATCAAAATAACTAATACCGGT
CCGGTCCTTACATTTATTTGTGGCCCTGAGGAGCCGTATGAGGTGAAAAT
CTCATGTACGGTTTTGTAATAGCGATGGAAACCGTAATGTTACCACCGAC
TATGATTATCTAACAGTTTAAGTACAGTTGATATAGTTGTGGCGCAATCA
AAATATGGTTTTTGGGGGTGGAATTTGTGGCGTCAACCTATAGGGTTTAT
CGTTTTTCTAATTTCTTCCCTAGCGGAATGCGAGAGATTACCTTTTGATT
TACCAGAAGCGGAAGAAGAATTAGTAGCCGGTTATCAAACCGAATATTCA
GGAATCAAATTTGGTTTATTTTACGTTGCTTCCTATCTAAATCTACTAGT
TTCCTCATTATTTGTAACAGTTCTTTACTTGGGAGGTTCGAATCTTTCCA
TTCATACATATTTGTTCCTGGGCTGGTTGAAATAAATAAGCGGATGGAAT
CTTTGGA
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